Data Integration and Interdisciplinary Oceanography Overview Team Projects Publications Latest News Technologies Data We collaborate with various research teams both internal to MBARI and external, integrating data from different disciplines (from physics to ecosystems), different instruments (from AUVs to satellites), and different regions (from Monterey Bay to the world) to study ecosystem processes and physical/biological interactions in the coastal and open oceans. We analyze data using statistical and machine learning techniques to investigate relationships between physics and biology in the ocean, and test them using simple mathematical models.We are particularly interested in addressing which processes drive the spatio-temporal variability of biological communities throughout the water column, across the California Current system, and at smaller scales in Monterey Bay. These processes can be physical (such as coastal upwelling, advection by oceanic currents, large-scale climate variability) or biological (such as phytoplankton/zooplankton interactions).Relationships are challenging to decipher because they are not always direct. For instance, biological populations do not only respond to today’s conditions but also depend on the history of events that occurred during their lifetime. Similarly, because plankton are displaced by currents, what we observe in one location may be the result of past conditions tens of kilometers away. We use simple models to disentangle these effects and uncover which processes drive biological communities, and the qualitative nature and quantitative functionality of that relationship. Team Directory Monique Messié Senior Research Specialist Mike McCann Senior Software Engineer Michael Anderson Research Engineer Rob Sherlock Research Specialist Christine Huffard Senior Research Specialist Francisco P. Chavez Senior Scientist/Biological Oceanographer Steven Haddock Senior Scientist/Marine Biologist Bruce H. Robison Senior Scientist/Midwater Ecologist Projects All Projects Integrated View of Surface-to-Seafloor Biological Communities Project Integrated View of Surface-to-Seafloor Biological Communities Integrating time series of surface, midwater, and benthic communities to identify processes connecting them with each other and with environmental variability. Large-Scale Climate Variability and Impacts on Biology Project Large-Scale Climate Variability and Impacts on Biology Utilizing global satellite products to study global physical and biological variability from interannual to decadal scales, and the processes connecting them. Biological Response to Upwelling in Eastern Boundary Upwelling Systems Project Biological Response to Upwelling in Eastern Boundary Upwelling Systems Developing satellite-based products to investigate what drives biological productivity in productive upwelling systems around the world—from phytoplankton to ecosystems. Publications All Publications Messié, M., R.E. Sherlock, C.L. Huffard, J.T. Pennington, C.A. Choy, R.P. Michisaki, K. Gomes, F.P. Chavez, B.H. Robison, and K.L. Smith, Jr. 2023. Coastal upwelling drives ecosystem temporal variability from the surface to the abyssal seafloor. Proceedings of the National Academy of Sciences, 120(13): e2214567120. https://doi.org/10.1073/pnas.2214567120 Fiechter, J., J. Santora, F.P. Chavez, D. Northcott, and M. Messié, 2020. Krill hotspot formation and phenology in the California Current Ecosystem. Geophysical Research Letters, 47(13): 1–10. https://doi.org/10.1029/2020GL088039 Messié, M., A. Petrenko, A.M. Doglioli, E. Martinez, and S. Alvain. 2022. Basin-scale biogeochemical and ecological impacts of islands in the tropical Pacific Ocean. Nature Geoscience, 15: 469–474. https://doi.org/10.1038/s41561-022-00957-8 Messié, M., D.A. Sancho-Gallegos, J. Fiechter, J.A. Santora, and F.P. Chavez. 2022. Satellite-based Lagrangian Model reveals how upwelling and oceanic circulation shape krill hotspots in the California Current System. Frontiers in Marine Science, 9: 1–19. https://doi.org/10.3389/fmars.2022.835813 Kavanaugh, M. T., T. Bell, D. Catlett, M.A. Cimino, S.C. Doney, W. Klajbor, M. Messié, E. Montes, F.E. Muller-Karger, D. Otis, J.A. Santora, I.D. Schroeder, J. Triñanes, and D.A. Siegel. 2021. Satellite remote sensing and the Marine Biodiversity Observation Network (MBON): Current science and future steps. Oceanography, 34: 62–79. https://doi.org/10.5670/oceanog.2021.215 Latest News All News News Integrating unique long-term datasets reveals how upwelling affects marine life from the surface to deep seafloor News 03.28.23 News Flash dance: Identifying marine organisms by their glow News 03.06.19 News New model predicts locations of biological hotspots in the ocean News 10.26.17 Technologies All Technologies Vehicle, Remotely Operated Vehicle (ROV) ROV Ventana Technology ROV Ventana A remotely operated vehicle equipped with a Sea-Bird 19plus V2 CTD package including a dissolved oxygen sensor, transmissometer, and spatial lasers mounted on the main camera. Observatory, Mooring Moorings Technology Moorings Moorings are used to measure basic oceanographic parameters like wind speed, temperature, and salinity. Software Spatial-Temporal Oceanographic Query System (STOQS) Technology Spatial-Temporal Oceanographic Query System (STOQS) This open-source software program provides new capabilities for scientists to gain insight from oceanographic data. Software Video Annotation and Reference System (VARS) Technology Video Annotation and Reference System (VARS) A software interface and database system that provides tools for describing, cataloging, retrieving, and viewing the data associated with deep-sea video archives. Vehicle, Autonomous Underwater Vehicle (AUV), Dorado Class Gulper Technology Gulper An upper-water-column autonomous underwater vehicle that rapidly acquires multiple large-volume seawater samples throughout the upper water column. Vehicle, Autonomous Underwater Vehicle (AUV), Tethys Class Long-range AUV (LRAUV) Technology Long-range AUV (LRAUV) The long-range AUV (LRAUV) greatly expands the types of observations and experiments possible with autonomous platforms. Vehicle, Remotely Operated Vehicle (ROV) ROV Doc Ricketts Technology ROV Doc Ricketts An integrated unmanned submersible research platform with features providing efficient, reliable, and precise sampling and data collection. Instrument CTD Rosette Technology CTD Rosette The CTD measures conductivity (which helps determine salinity), temperature, and depth. Data All Data Data Global Modes of Sea Surface Temperature Data from a century-long EOF analysis of global sea surface temperature Data Nitrate Supply Estimates in Upwelling Systems Data from seasonal nitrate supply that was computed in the four major Eastern Boundary Upwelling Systems (EBUS): California, Peru, Northwest Africa, and Benguela Data Krill Hotspots in the California Current Data from a NASA-funded project that combined remote sensing products, ecosystem models and in situ data to investigate zooplankton hotspots
Integrated View of Surface-to-Seafloor Biological Communities Project Integrated View of Surface-to-Seafloor Biological Communities Integrating time series of surface, midwater, and benthic communities to identify processes connecting them with each other and with environmental variability.
Large-Scale Climate Variability and Impacts on Biology Project Large-Scale Climate Variability and Impacts on Biology Utilizing global satellite products to study global physical and biological variability from interannual to decadal scales, and the processes connecting them.
Biological Response to Upwelling in Eastern Boundary Upwelling Systems Project Biological Response to Upwelling in Eastern Boundary Upwelling Systems Developing satellite-based products to investigate what drives biological productivity in productive upwelling systems around the world—from phytoplankton to ecosystems.
Messié, M., R.E. Sherlock, C.L. Huffard, J.T. Pennington, C.A. Choy, R.P. Michisaki, K. Gomes, F.P. Chavez, B.H. Robison, and K.L. Smith, Jr. 2023. Coastal upwelling drives ecosystem temporal variability from the surface to the abyssal seafloor. Proceedings of the National Academy of Sciences, 120(13): e2214567120. https://doi.org/10.1073/pnas.2214567120
Fiechter, J., J. Santora, F.P. Chavez, D. Northcott, and M. Messié, 2020. Krill hotspot formation and phenology in the California Current Ecosystem. Geophysical Research Letters, 47(13): 1–10. https://doi.org/10.1029/2020GL088039
Messié, M., A. Petrenko, A.M. Doglioli, E. Martinez, and S. Alvain. 2022. Basin-scale biogeochemical and ecological impacts of islands in the tropical Pacific Ocean. Nature Geoscience, 15: 469–474. https://doi.org/10.1038/s41561-022-00957-8
Messié, M., D.A. Sancho-Gallegos, J. Fiechter, J.A. Santora, and F.P. Chavez. 2022. Satellite-based Lagrangian Model reveals how upwelling and oceanic circulation shape krill hotspots in the California Current System. Frontiers in Marine Science, 9: 1–19. https://doi.org/10.3389/fmars.2022.835813
Kavanaugh, M. T., T. Bell, D. Catlett, M.A. Cimino, S.C. Doney, W. Klajbor, M. Messié, E. Montes, F.E. Muller-Karger, D. Otis, J.A. Santora, I.D. Schroeder, J. Triñanes, and D.A. Siegel. 2021. Satellite remote sensing and the Marine Biodiversity Observation Network (MBON): Current science and future steps. Oceanography, 34: 62–79. https://doi.org/10.5670/oceanog.2021.215
News Integrating unique long-term datasets reveals how upwelling affects marine life from the surface to deep seafloor News 03.28.23
Vehicle, Remotely Operated Vehicle (ROV) ROV Ventana Technology ROV Ventana A remotely operated vehicle equipped with a Sea-Bird 19plus V2 CTD package including a dissolved oxygen sensor, transmissometer, and spatial lasers mounted on the main camera.
Observatory, Mooring Moorings Technology Moorings Moorings are used to measure basic oceanographic parameters like wind speed, temperature, and salinity.
Software Spatial-Temporal Oceanographic Query System (STOQS) Technology Spatial-Temporal Oceanographic Query System (STOQS) This open-source software program provides new capabilities for scientists to gain insight from oceanographic data.
Software Video Annotation and Reference System (VARS) Technology Video Annotation and Reference System (VARS) A software interface and database system that provides tools for describing, cataloging, retrieving, and viewing the data associated with deep-sea video archives.
Vehicle, Autonomous Underwater Vehicle (AUV), Dorado Class Gulper Technology Gulper An upper-water-column autonomous underwater vehicle that rapidly acquires multiple large-volume seawater samples throughout the upper water column.
Vehicle, Autonomous Underwater Vehicle (AUV), Tethys Class Long-range AUV (LRAUV) Technology Long-range AUV (LRAUV) The long-range AUV (LRAUV) greatly expands the types of observations and experiments possible with autonomous platforms.
Vehicle, Remotely Operated Vehicle (ROV) ROV Doc Ricketts Technology ROV Doc Ricketts An integrated unmanned submersible research platform with features providing efficient, reliable, and precise sampling and data collection.
Instrument CTD Rosette Technology CTD Rosette The CTD measures conductivity (which helps determine salinity), temperature, and depth.
Data Global Modes of Sea Surface Temperature Data from a century-long EOF analysis of global sea surface temperature
Data Nitrate Supply Estimates in Upwelling Systems Data from seasonal nitrate supply that was computed in the four major Eastern Boundary Upwelling Systems (EBUS): California, Peru, Northwest Africa, and Benguela
Data Krill Hotspots in the California Current Data from a NASA-funded project that combined remote sensing products, ecosystem models and in situ data to investigate zooplankton hotspots