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2019

Stark, J. S., E.T. Peltzer, D.I. Kline, A.M. Queiros, E.T. Cox, K. Headley, J. Barry, F. Gazeau, J.W. Runcie, S. Widdicombe, M. Milnes, N.P. Roden, J. Black, S. Whiteside, G. Johnstone, J. Ingels, E. Shaw, L. Bodrossy, J.D. Gaitan-Espitia, W. Kirkwood, and J.P. Gattuso. 2019. Free Ocean CO2 Enrichment (FOCE) experiments: Scientific and technical recommendations for future in situ ocean acidification projects. Progress in Oceanography, 172: 89–107. https://doi.org/10.1016/j.pocean.2019.01.006

Sulpis, O., C.O. Dufour, D.S. Trossman, A.J. Fassbender, B.K. Arbic, B.P. Boudreau, J.P. Dunne, and A. Mucci. 2019. Reduced CaCO3 flux to the seafloor and weaker bottom current speeds curtail benthic CaCO3 dissolution over the 21st Century. Global Biogeochemical Cycles, 33: 1654–1673. https://doi.org/10.1029/2019GB006230

Todd, R.E., F.P. Chavez, S. Clayton, S. Cravatte, M. Goes, M. Graco, X. Lin, J. Sprintall, N.V. Zilberman, M. Archer, J. Arístegui, M. Balmaseda, J.M. Bane, M.O. Baringer, J.A. Barth, L.M. Beal, P. Brandt, P.H.R. Calil, E. Campos, L.R. Centurioni, M.P. Chidichimo, M. Cirano, M.F. Cronin, E.N. Curchitser, R.E. Davis, M. Dengler, B. deYoung, S. Dong, R. Escribano, A.J. Fassbender, S.E. Fawcett, M. Feng, G.J. Goni, A.R. Gray, D. Gutiérrez, D. Hebert, R. Hummels, S. Ito, M. Krug, F. Lacan, L. Laurindo, A. Lazar, C.M. Lee, M. Lengaigne, N.M. Levine, J. Middleton, I. Montes, M. Muglia, T. Nagai, H.I. Pavelsky, J.B. Palter, H.E. Phillips, A. Piola, A.J. Plueddemann, B. Qiu, R.R. Rodrigues, M. Roughan, D.L. Rudnick, R.R. Rykaczewski, M. Saraceno, H. Seim, A.S. Gupta, L. Shannon, B.M. Sloyan, A.J. Sutton, L. Thompson, A.K. van der Plas, D. Volkov, J. Wilkin, D. Zhang, and L. Zhang. 2019. Global perspectives on observing ocean boundary current systems. Frontiers in Marine Science, 6: 1–38. https://doi.org/10.3389/fmars.2019.00423

Vieira, R.P., B.J. Bett, D.O.B. Jones, J.M. Durden, K.J. Morris, M.R. Cunha, C.N. Trueman, and H.A. Ruhl. 2019. Deep-sea sponge aggregations (Pheronema carpenteri) in the Porcupine Seabight (NE Atlantic) potentially degraded by demersal fishing. Progress in Oceanography, 183(102189). https://doi.org/10.1016/j.pocean.2019.102189

Wideman, J.G., A. Monier, R. Rodriguez-Martinez, G. Leonard, E. Cook, C.L. Poirier, F. Maguire, D.S. Milner, N.A.T. Irwin, K. Moore, A.E. Santoro, P.J. Keeling, A.Z. Worden, and T.A. Richards. 2019. Unexpected mitochondrial genome diversity revealed by targeted single-cell genomics of heterotrophic flagellated protists. Nature Microbiology, 5: 154–165. https://doi.org/10.1038/s41564-019-0605-4

Wilken, S., C. Yung, M. Hamilton, K. Hoadley, J. Nzongo, C. Eckmann, M. Corrochano Lugue, C.L. Poirier, and A.Z. Worden. 2019. The need to account for cell biology on characterising predatory mixotrophs in aquatic environments. Philosophical Transactions of the Royal Society B, 374: 1–13. https://doi.org/10.1098/rstb.2019.0086

Wilken, S., C.J. Choi, and A. Z. Worden. 2019. Contrasting mixotrophic lifestyles reveal different ecological niches in two closely related marine protists. Journal of Phycology, 56: 52–67. https://doi.org/10.1111/jpy.12920

Winnikoff, J.R., W.R. Francis, E.V. Thuesen, and S.H.D. Haddock. 2019. Combing transcriptomes for secrets of deep-sea survival: Environmental diversity drives patterns of protein evolution. Integrative and Comparative Biology, 59(4): 786–798. https://doi.org/10.1093/icb/icz063. PDF.

Yamahara, K.M., C.M. Preston, J. Birch, K.R. Walz, R. Marin III, S. Jensen, D. Pargett, B. Roman, W. Ussler III, Y. Zhang, J. Ryan, B. Hobson, B. Kieft, B.Y. Raanan, K.D. Goodwin, F.P. Chavez, and C.A. Scholin. 2019. In situ Autonomous Acquisition and Preservation of Marine Environmental DNA Using an Autonomous Underwater Vehicle. Frontiers in Marine Science, 6: 1–14. https://doi.org/10.3389/fmars.2019.00373

Zhang, Y., B. Kieft, B. Hobson, J.P. Ryan, B. Barone, C.M. Preston, B. Roman, B.Y. Raanan, R. Marin III, T.C. O'Reilly, C.A. Rueda, and D. Pargett. 2019. Autonomous tracking and sampling of the deep chlorophyll maximum layer in an open-ocean eddy by a long-range autonomous underwater vehicle. IEEE Journal of Oceanic Engineering, 45(4): 1308–1321. https://doi.org/10.1109/JOE.2019.2920217

Zhang, Y., C. Rueda, B. Kieft, J.P. Ryan, C. Wahl, T.C. O'Reilly, T. Maughan, and F.P. Chavez. 2019. Autonomous tracking of an oceanic thermal front by a Wave Glider. Journal of Field Robotics, 36(5): 940–954. https://doi.org/10.1002/rob.21862

Zhang, Y., J.P. Ryan, B. Kieft, B.W. Hobson, R.S. McEwen, M.A. Godin, J.B. Harvey, B. Barone, J.G. Bellingham, J.M. Birch, C.A. Scholin, and F.P. Chavez. 2019. Targeted sampling by autonomous underwater vehicles. Frontiers in Marine Science, 6: 1–12. https://doi.org/10.3389/fmars.2019.00415

Zhang, Z., B.H. Robison, and S. Ramanathan. 2019. Marine biology requires a new line of inquiry in materials research. MRS Bulletin, 44: 597–599. https://doi.org/10.1557/mrs.2019.186

Zimmerman, A.E., C. Howard-Varona, D.M. Needham, S. John, A.Z. Worden, M.B. Sullivan, J.R. Waldbauer, and M.L. Coleman. 2019. Metabolic and biogeochemical consequences of viral infection in aquatic ecosystems. Nature Reviews Microbiology, 18: 21–34. https://doi.org/10.1038/s41579-019-0270-x

Zimmerman, R.C., C. Bachy, X. Ma, S. Roux, H.B. Jang, M.B. Sullivan, J.R. Waldbauer, and A.Z. Worden. 2019. Closely related viruses of the marine picoeukaryotic alga Ostreococcus lucimarinus exhibit different ecological strategies. Environmental Microbiology, 21: 2148–2170. https://doi.org/10.1111/1462-2920.14608

2018

Albright, R., Y. Takeshita, D.A. Koweek, A. Ninokawa, K. Wolfe, T. Rivlin, Y. Nebuchina, J. Young, and K. Caldeira. 2018. Carbon dioxide addition to coral reef waters suppresses net community calcification. Nature, 555: 516–519. http://doi.org/10.1038/nature25968

Archer, S.K., A.S. Kahn, S.P. Leys, T. Norgard, F. Girard, C. Du Preez, and A. Dunham. 2018. Pyrosome consumption by benthic organisms during blooms in the NE Pacific and Gulf of Mexico. Ecology, 99: 981–984. https://doi.org/10.1002/ecy.2097

Ardron, J.A., H.A. Ruhl, and D.O.B. Jones. 2018. Incorporating transparency into the governance of deep-seabed mining in the area beyond national jurisdiction. Marine Policy, 89: 58–66. https://doi.org/10.1016/j.marpol.2017.11.021

Arranz, P., K.J. Benoit-Bird, B.L. Southall, J. Calambokidis, A.S. Friedlander, and P.L. Tyack. 2018. Risso's dolphins plan foraging dives. Journal of Experimental Biology, 221(4): 1–9. https://doi.org/10.1242/jeb.165209b

Arteaga, L., N. Haëntjens, E.S. Boss, K.S. Johnson, and J.L. Sarmiento. 2018. Assessment of export efficiency equations in the Southern Ocean applies to satellite-based net primary production. Journal of Geophyiscal Research: Oceans, 123: 2945–2964. https://doi.org/10.1002/2018JC013787

Babonis, L., M.B. Debiasse, W.R. Francis, L.M. Christianson, S.H.D. Haddock, M.Q. Martindale, and J.F. Ryan. 2018. Integrating embryonic development and evolutionary history to characterize tentacle-specific cell types in a ctenophore. Molecular Biology and Evolution, 35: 2940–2956. https://doi.org/10.1093/molbev/msy171

Bachy, C., C.J. Charlesworth, A.M. Chan, F.J. Finke, C.H. Wong, C.L. Wei, S. Sudek, M.L. Coleman, C.A. Suttle, and A.Z. Worden. 2018. Transcriptional responses of the marine green alga Micromonas pusilla and an infecting prasinovirus under different phosphate conditions. Environmental Microbiology, 20: 2898–2912. https://doi.org/10.1111/1462-2920.14273

Benoit-Bird, K.J., T.P. Welch, C.M. Waluk, J.A. Barth, I. Wangen, P. McGill, C. Okuda, G.A. Hollinger, M. Sato, and S. McCammon. 2018. Equipping an underwater glider with a new echosounder to explore ocean ecosystems. Limnology and Oceanography: Methods, 16: 734–749. https://doi.org/10.1002/lom3.10278

Birch, J.M. 2018. Collecting and processing samples in remote and dangerous places: The environmental sample processor as a case study. Pure and Applied Chemistry, 90: 1625–1630. https://doi.org/10.1515/pac-2018-0201

Birch, J.M., B. Barone, E. DeLong, G. Foreman, K. Gomes, B. Hobson, S. Jensen, D.M. Karl, B. Kieft, T. O'Reilly, D. Pargett, C. Preston, B. Roman, A. Romano, J. Ryan, C.A. Scholin, W. Ussler, K. Yamahara, and Y. Zhang. 2018. Autonomous targeted sampling of the deep chlorophyll maximum layer in a subtropical north Pacific eddy. OCEANS 2018 MTS/IEEE Charleston, pp. 1-5. doi: 10.1109/OCEANS.2018.8604898.

Bowers, H.A., J.P. Ryan, K. Hayashi, A.L. Woods, R. Marin III, G.J. Smith, K.A. Hubbard, G. Doucette, C. Mikulski, A.G. Gellene, Y. Zhang, R. Kudela, D. Caron, J. Birch, and C. Scholin. 2018. Diversity and toxicity of Pseudo-nitzschia species in Monterey Bay: Perspectives from targeted and adaptive sampling. Harmful Algae, 78: 129–141. https://doi.org/10.1016/j.hal.2018.08.006

Branch, A., M.M. Flexas, B. Claus, A.F. Thompson, Y. Zhang, E.B. Clark, S. Chien, D. Fratantoni, J.C. Kinsey, B. Hobson, B. Kieft, and F.P. Chavez. 2018. Front delineation and tracking with multiple underwater vehicles. Journal of Field Robotics, 36(3): 568–586. https://doi.org/10.1002/rob.21853

Breitburg, D., L.A. Levin, A. Oschlies, M. Grégoire, F.P. Chavez, D.J. Conley, V. Garçon, D. Gilbert, D. Gutiérrez, K. Isensee, G.S. Jacinto, K.E. Limburg, I. Montes, S.W.A. Naqvi, G.C. Pitcher, N.N. Rabalais, M.R. Roman, K.A. Rose, B.A. Seibel, M. Telszewski, M. Yasuhara, and J. Zhang. 2018. Declining oxygen in the global ocean and coastal waters. Science, 359: 13. https://doi.org/10.1126/science.aam7240

Brewer, P.G., E.T.Peltzer, and P.M. Walz. 2018. How much H2O is there in the ocean? The structure of water in sea water. Journal of Geophyiscal Research: Oceans, 124: 212–226. https://doi.org/10.1029/2018JC014457

Carranza, M.M., S.T. Gille, P.J.S. Franks, K.S. Johnson, R. Pinkel, and J.B. Girton. 2018. When mixed layers are not mixed. Storm-driven mixing and bio-optical vertical gradients in mixed layers of the Southern Ocean. Journal of Geophyiscal Research, 123: 7264–7289. https://doi.org/10.1029/2018JC014416

Castro, C.G., F.P. Chavez, J.T. Pennington, R. Durazo, and C.A. Collins. 2018. Temporal variability of downward fluxes of organic carbon off Monterey Bay. Deep Sea Research Part II Topical Studies in Oceanography, 151: 89–101. https://doi.org/10.1016/j.dsr2.2018.07.001

Chavez, F.P., C.A. Collins, and K.H. Coale. 2018. Studies of the California Current, Part 3. Deep Sea Research Part II: Topical Studies in Oceanography, 151: 146. https://doi.org/10.1016/j.dsr2.2018.05.002

Chavez, F.P., J. Sevadjian, C. Wahl, J. Friederich, and G.E. Friederich. 2018. Measurement of pCO2 and pH from an autonomous surface vehicle in a coastal upwelling system. Deep Sea Research Part II Topical Studies in Oceanography, 151: 137–146. https://doi.org/10.1016/j.dsr2.2017.01.001

Christiansen, S., H.J. Hoving, F. Schütte, H. Hauss, J. Karstensen, A. Körtzinger, S.M. Schröder, L. Stemmann, B. Christiansen, M. Picheral, P. Brandt, B. Robison, R. Koch, and R. Kiko. 2018. Particulate matter flux interception in oceanic mesoscale eddies by the polychaete Poeobius sp.. Limnology and Oceanography, 63: 2093–2109. https://doi.org/10.1002/lno.10926

Clague, D., J. Paduan, B. Dreyer, W.W. Chadwick Jr., K. Rubin, M.R. Perfit, and A.T. Fundis. 2018. Chemical variations in the 1998, 2011, and 2015 lava flows from axial seamount, Juan de Fuca Ridge: Cooling during ascent, lateral transport, and flow. Geochemistry Geophysics Geosystems, 19(9): 2915–2933. https://agupubs.onlinelibrary.wiley.com/doi/abs/10.1029/2018GC007708

Clague, D., K.M. Marsaglia, B.L. Cousens, and J.B. Paduan. 2018. Oligocene and Miocene volcanics in the sedimentary forearc of the Outer California Borderland. Society for Sedimentary Geology, 110. https://doi.org/10.2110/sepmsp.110.04

Clague, D.A., D.W. Caress, B.M. Dreyer, L. Lundsten, J.B. Paduan, R.A. Portner, R. Spelz-Madero, J.A. Bowles, P.R. Castillo, R. Guardado-France, M. Le Saout, J.F. Martin, M.A. Santa Rosa-del Rio, and R.A. Zierenber. (2018). Geology of the Alarcon Rise, Southern Gulf of California. Geochemistry Geophysics Geosystems, 19: 807–837. http://doi.org/10.1002/2017GC007348

Coale, K., M. Prince, R. Muller, S. Lamerdin, F.P. Chavez, and C. Collins. 2018. Introduction to the California Current Studies, Part 3, including a brief description of R/V Point Sur and her contributions to graduate research and education, 1986-2016. Deep Sea Research Part II Topical Studies in Oceanography, 151: 1–3. https://doi.org/10.1016/j.dsr2.2018.05.002

Cyronak, T., A.J. Andersson, S. D'Angelo, P.J. Bresnahan, C. Davidson, T. Kindeberg, J. Pennise, Y. Takeshita, and M. White. 2018. Short-term spatial and temporal carbonate chemistry variability in two contrasting seagrass meadows: Implications for pH buffering capacities. Estuaries and Coasts, 41: 1282–1296. http://dx.doi.org/10.1007/s12237-017-0356-5

Djurhuus, A., K. Pitz, N.A. Sawaya, J. Rojas Márquez, B. Michaud, E. Montes, F.E. Muller-Karger, and M. Breitbart. 2018. Evaluation of marine zooplankton community structure through environmental DNA metabarcoding. Limnology and Oceanography Methods, 16: 209–221. https://doi.org/10.1002/lom3.10237

Dornelas, M., L.H. Antao, E. Moyes, A.E. Bates, A.E. Magurran, D. Adam, A.A. Akhmetzhanova, W. Appeltans, J.M. Arcos, H. Arnold, N. Ayyappan, G. Badihi, A.H. Baird, M. Barbosa, T.E. Barreto, C. Bassler, A. Bellgrove, J. Belmaker, L. Benedetti-Checchi, B.J. Bett, A.D. Bjorkman, M. Blazewicz, S.A. Blowes, C.P. Bloch, T.C. Bonebrake, S. Boyd, M. Brandford, A.J. Brooks, J.H. Brown, H. Bruelheide, P. Budy, F. Carvalho, E. Castaneda-Moya, C.A. Chen, J.F. Chamblee, T.J. Chase, L.S. Collier, S.K. Collinge, R. Condit, E.J. Cooper, J.H.C. Cornelissen, U. Cotano, S.K. Crow, G. Damasceno, C.H. Davies, R.A. Davis, F.P. Day, S. Degraer, T.S. Doherty, T.E. Dunn, G. Durigan, J.E. Duffy, D. Edelist, G.J. Edgar, R. Elahi, S.C. Elmendorf, A. Enemar, S.K.M. Ernest, R. Escribano, M. Estiarte, B.S. Evans, T.Y. Fan, F.T. Farah, L.L. Fernandes, F.Z. Farneda, A. Fidelis, R. Fitt, A.M. Fozaa, G.A.D.C. Franco, G.E. Frank, W.R. Fraser, H. Garcia, R.C. Gatti, O. Givan, E. Gorgone-Barbosa, W.A. Gould, C. Gries, G.D. Grossman, J.R. Gutierrez, S. Hale, M.E. Harmon, J. Harte, G. Haskins, D.L. Henshaw, L. Hermanutz, P. Hidalgo, P. Higuchi, A. Hoey, G.V. Hoey, A. Hofgaard, K. Holeck, R.D. Hollister, R. Holmes, M. Hoogenboom, C. Hsieh, S.P. Hubbell, F. Huettmann, C.L. Huffard, A.H. Hurlbert, N.M. Ivanauskas, D. Janik, U. Jandt, A. Jazdzewska, T. Johannessen, J. Johnstone, J. Jones, F.A.M. Jones, J. Kang, T. Kartawijaya, E.C. Keeley, D.A. Kelt, R. Kinnear, K. Klanderud, H. Knutsen, C.C. Koenig, A.R. Kortz, K. Kral, L.A. Kuhnz, C.Y. Kuo, D.J. Kushner, C. Laguionie-Marchias, L.T. Lancaster, C.M. Lee, J.S. Lefcheck, E. Levesque, D. Lightfoot, F. Lloret, J.D. Lloyd, A. Lopez-Baucells, M. Louzano, J.S. Madin, B. Magnusson, S. Malamud, I. Matthews, K.P. McFarland, B. McGill, D. MvKnight, W.O. McLarney, J. Meador, P.L. Meserve, D.J. Metcalfe, C.F.J. Meyer, A. Michelsen, N. Milchakova, T. Moens, E. Moland, J. Moore, C.M. Moreira, J. Miller, G. Murphy, I.H. Myers-Smith, R.W. Myster, A. Naumov, F. Neat, J.A. Nelson, M.P. Nelson, S.F. Newton, N. Norden, J.C. Oliver, E.M. Olsen, V.G. Onipchenko, K. Pabis, R.J. Pabst, A. Paquette, S. Pardede, D.M. Paterson, R. Pelissier, J. Penuelas, A. Perez-Matus, O. Pizarro, F. Pomati, E. Post, H.H.T. Prins, J.C. Priscu, P. Provoost, K.L. Prudic, E. Pulliainen, B.R. Ramesh, O.M. Ramos, A. Rassweiler, J.E. Rebelo, D.C. Reed, P.B. Reich, S.M. Remillard, A.J. Richardson, I. van Rijn, R. Rocha, V.H. Rivera-Monroy, C. Rixen, K.P. Robison, R.R. Rodrigues, D.C. Rossa-Feres, L. Rudstam, H. Ruhl, C.S. Ruz, E.M. Sampaio, N. Rybicki, A. Rypel, S. Sal, B. Salgado, F.A.M. Santos, A.P. Savassi-Coutinho, S. Scanga, J. Schmidt, R. Schooley, F. Setiawan, K.T. Shao, G.R. Shaver, S. Sherman, T.W. Sherry, J. Sicinski, C. Sievers, A.C. da Silva, F.R. da Silva, F.L. Silveira, J. Slingsby, T. Smart, S.J. Snell, N.A. Soudzilovskaia, G.B.G. Souza, F.M. Souza, V.C. Souza, C.D. Stallings, R. Stanforth, E.H. Stanley, J.M. Sterza, M. Stevens, R. Stuart-Smith, J.M. Suarez, S. Supp, J.Y. Tamashiro, S. Tarigan, G.P. Thiede, S. Thorn, A. Tolvanen, M.T.Z. Toniato, O. Totland, R.R. Twilley, G. Vaitkus, N. Valdivia, M.I. Ballejo, T.J. Valone, C. Van Colen, J. Vanaverbeke, F. Venturoli, H.M. Verheye, M. Vianna, R.P. Vieira, T. Vrska, C.Q. Vu, L.V. Vu, R.B. Waide, C. Waldock, D. Watts, S. Webb, T. Wesotowski, E.P. White, C.E. Widdicombe, D. Wilgers, R. Williams, S.B. Williams, M. Williamson, M.R. Willig, T.J. Willis, S. Wipf, K.D. Woods, E.J. Woehler, K. Zawada, and M.L. Zettler. 2018. BioTIME: A time-series database for the Anthropocene. Global Ecology and Biogeography, 27(7): 760–786. http://doi.org/10.1111/geb.12729

Drazen, J.C., C.R. Smith, K. Gjerde, W. Au, J. Black, G. Carter, M. Clark, J.M. Durden, P. Dutrieux, E. Goetze, S. Haddock, M. Hatta, C. Hauton, P. Hill , J. Koslow, A.B. Leitner, C. Measures, A. Pacini, F. Parrish, T. Peacock, J. Perelman, T. Sutton, C. Taymans, V. Tunnicliffe, L. Watling, H. Yamamoto, E. Young, and A.F. Ziegler. 2018. Report of the workshop evaluating the nature of midwater mining plumes and their potential effects on midwater ecosystems. Research  Ideas and Outcomes, 5: e33527. https://doi.org/10.3897/rio.5.e33527

Dunlop, K.M., T. Jarvis, K.J. Benoit-Bird, C.M. Waluk, D.W. Caress, H. Thomas, and K.L. Smith Jr. 2018. Detection and characterization of deep-sea benthopelagic animals from an autonomous underwater vehicle with a multibeam echosounder: a proof of concept and description of data-processing methods. Deep Sea Research 1, 134: 64–69. https://doi.org/10.1016/j.dsr.2018.01.006

Fassbender, A.J., A. Bourbonnais, S. Clayton, P. Gaube, M. Omand, P.J. Franks, M.A. Altabet, and D.J. McGillicuddy Jr. 2018. Interpreting mosaics of ocean biogeochemistry. EOS, 99: 1–14. https://doi.org/10.1029/2018EO109707

Fassbender, A.J., J.B. Palter, M.C. Long, T. Ito, S.P. Bishop, and M.F. Cronin. Ocean carbon hot spots: A joint US CLIVAR and OCB workshop report (No. 2018-3). Washington, DC: U.S. CLIVAR Project Office, 2018. https://doi.org/10.5065/d6z036zs

Fassbender, A.J., K.B. Rodgers, H.I. Palevsky, and C.L. Sabine. 2018. Seasonal asymmetry in the evolution of surface ocean pCO2 and pH thermodynamic drivers and the influence on sea-air CO2 flux. Global Biogeochemical Cycles, 32: 1476–1497. https://doi.org/10.1029/2017GB005855

Fassbender, A.J., S.R. Alin, R.A. Feely, A.J. Sutton, J.A. Newton, C. Krembs, J. Bos, M. Keyzers, A. Devol, W. Ruef, and G. Pelletier. 2018. Seasonal carbonate chemistry variability in marine surface waters of the US Pacific Northwest. Earth System Science Data, 10: 1367–1401. https://doi.org/10.5194/essd-10-1367-2018

Fawcett, S. E., K.S. Johnson, S.C. Riser, N. Van Oostende, and D.M. Sigman. 2018. Low-nutrient organic matter in the Sargasso Sea thermocline: A hypothesis for its role, identity, and carbon cycle implications. Marine Chemistry, 207: 108–123. https://doi.org/10.1016/j.marchem.2018.10.008

Feely, Richard A., R.R. Okazaki, W.J. Cai, N. Bednaršek, S.R. Alin, R.H. Byrne, and A. Fassbender. 2018. The combined effects of acidification and hypoxia on pH and aragonite saturation in the coastal waters of the California current ecosystem and the northern Gulf of Mexico. Continental Shelf Research, 152: 50–60. https://doi.org/10.1016/j.csr.2017.11.002

Fritzsche, E., C. Staudinger, J.P.  Fischer, R. Thar, H. Jannasch, J.N. Plant, M. Blum, G. Massion, H. Thomas, J. Hoech, K.S. Johnson, S.M. Borisov, and I. Klimant. 2018. A validation and comparison study of new, compact, versatile optodes for oxygen, pH and carbon dioxide in marine environments. Marine Chemistry, 207: 63–76. https://doi.org/10.1016/j.marchem.2018.10.009

Gallo, N.D., L.A. Levin, M. Beckwith, and J.P. Barry. 2018. Home sweet suboxic home: Remarkable hypoxia tolerance in two demersal fish species in the Gulf of California. Ecology, 100(3): e02539. https://doi.org/10.1002/ecy.2539

Gill, J., P. Michael, Woodcock, B. Dreyer, F. Ramos, D. Clague, J. Kela, S. Scott, K. Konrad, and D. Stakes. 2018. Corrigendum to: 'Spatial and temporal scale of mantle enrichment at the Endeavour Segment, Juan de Fuca Ridge'. Journal of Petrology, 59: 863–896. https://doi.org/10.1093/petrology/egy076

Grant, N., E. Matveev, A.S. Kahn, and S.P. Leys. 2018. Suspended sediment causes feeding current arrests in situ in the glass sponge Aphrocallistes vastus. Marine Environmental Research, 137: 111–120. https://doi.org/10.1016/j.marenvres.2018.02.020

Gray, A. R., K.S. Johnson, S.M. Bushinsky, S.C. Riser, J.L. Russell, L.D. Talley, R. Wanninkhof, N.L. Williams, and J.L. Sarmiento. 2018. Autonomous biogeochemical floats detect a significant carbon dioxide outgassing in the high-latitude Southern Ocean . Geophysical Research Letters, 45: 9049–9057. https://doi.org/10.1029/2018GL078013

Guo, J., S. Wilken, V. Jimenez, C.J. Choi, C.K. Ansong, R. Dannebaum, L. Sudek, D.S. Milner, C. Bachy, E.N. Reistetter, V.A. Elrod, D. Klimov, S.O. Purvine, C.L. Wei, G. Kunde-Ramamoorthy, T.A. Richards, U.W. Goodenough, R.D. Smith, S.J. Callister, and A.Z. Worden. 2018. Specialized proteomic responses and an ancient photoprotection mechanism sustain marine green algal growth during phosphate limitation. Nature Microbiology, 3: 781–790. http://dx.doi.org/10.1038/s41564-018-0178-7

Gwiazda, R., C.K. Paull, S.R. Dallimore, H. Melling, Y.K. Jin, J.K. Hong, M. Riedel, E.M. Lundsten, K. Anderson, and K. Conway. 2018. Freshwater seepage into sediments of the shelf, shelf edge, and continental slope of the Canadian Beaufort Sea. Geochemistry, Geophysics, Geosystems, 19: 3039–3055. https://doi.org/10.1029/2018GC007623

Hobson, B., B. Kieft, B.Y. Raanan, Y. Zhang, J. Birch, J.P. Ryan, and F.P. Chavez. 2018. An autonomous vehicle-based open ocean Lagrangian observatory. 2018 IEEE OES Autonomous Underwater Vehicle Symposium, Porto, 6–9 November 2018. IEEE Oceanic Engineering Society, Laboratório de Sistemas e Tecnologia Subaquática, Universidade do Porto.

Hoving, H.J.T., P. Neitzel, and B.H. Robison. 2018. In situ observations lead to the discovery of the large ctenophore Kiyohimea usagi (Lobata: Eurhamphaeidae) in the eastern tropical Atlantic. Zootaxa, 4526: 232–238. http://dx.doi.org/10.11646/zootaxa.4526.2.8

Jin, Y.K., M.M. Côté, C.K. Paull, and E.L. King. 2018. 2017 Korea-Canada-U.S.A. Beaufort Sea (offshore Yukon and Northwest Territories) research program: 2017 Araon expedition (ARA08C) cruise report. Geological Survey of Canada, 8406: 1–206. https://doi.org/10.4095/308396

Jones, B., F.P. Chavez, B. Kieft, T. O'Reilly, and C. Wahl. 2018. Field results from point to point real-time underwater acoustic tracking using a simple mathematical filter. 2018 IEEE OES Autonomous Underwater Vehicle Symposium, Porto, 6–9 November 2018. IEEE Oceanic Engineering Society, Laboratório de Sistemas e Tecnologia Subaquática, Universidade do Porto.

Jones, M.R., S.A. Soule, H.M. Gonnermann, V. Le Roux, and D.A. Clague. 2018. Magma ascent and lava flow emplacement rates during the 2011 Axial Seamount eruption based on CO2 degassing. Earth and Planetary Science Letters, 494: 32–41. https://doi.org/10.1016/j.epsl.2018.04.044

Joo, S., M.H. Wang, G. Lui, J. Lee, A. Barnas, E. Kim, S. Sudek, A.Z. Worden, and J.H. Lee. 2018. Common ancestry of heterodimerizing TALE homeobox transcription factors across Metazoa and Archeplastida. BMC Biology, 16(136): 1–12. https://doi.org/10.1186/s12915-018-0605-5

Kahn, A. S., J.W.F. Chu, and S.P. Leys. (2018). Trophic ecology of glass sponge reefs in the Strait of Georgia, British Columbia. Scientific Reports, 8(756): 1–11. https://doi.org/10.1038/s41598-017-19107-x

Kahn, A.S., and J.B. Geller. 2018. Partial mitochondrial genome sequences of two abyssal sponges (Porifera, Hexactinellida): Bathydorus laniger and Docosaccus maculatus. Genome Announcements, 6(16). https://doi.org/10.1128/genomeA.00234-18

Katija, K., A.D. Sherman, R.E. Sherlock, and B. Robison. 2018. DeepPIV reveals how mucus houses of deep-sea, giant Larvaceans are built. Integrative and Comparative Biology, 58(Issue suppl_1): 114. https://doi.org/10.1093/icb/icy001

Kemp, M., and E.J. Martin. 2018. Fault isolation of an electro-mechanical linear actuator. Annual Conference of the Prognostics and Health Management Society, Philadelphia, September 24–27 2018.

Kieft, Brian, F.P. Chavez, D.A. Clague, B.W. Hobson, K. Reisenbichler, B.H. Robison, A.D. Sherman, and K.L. Smith. 2018. How autonomous vehicles are enhancing ocean science. In 2018 IEEE/OES Autonomous Underwater Vehicle Workshop (AUV), Porto, Portugal, November 2018: 1–5. IEEE. https://doi.org/10.1109/AUV.2018.8729705

Koweek, D.A., R.C. Zimmerman, K.M. Hewett, B. Gaylord, S.N. Giddings, K.J. Nickols, J.L. Ruesink, J.J. Stachowicz, Y. Takeshita, and K. Caldeira. 2018. Expected limits on the ocean acidification buffering potential of a temperature seagrass meadow. Ecological Applications, 28: 1964–1714. https://doi.org/10.1002/eap.1771

Leys, S. P., and A.S. Kahn. 2018. Oxygen and the energetic requirements of the first multicellular animals. Integrative and Comparative Biology, 58: 666–676. https://doi.org/10.1093/icb/icy051

Litvin, S.Y., M.P. Weinstein, M. Sheaves, and I. Nagelkerken. 2018. What makes nearshore habitats nurseries for nekton? An emerging view of the nursery role hypothesis. Estuaries and Coasts, 41: 1539–1550. https://doi.org/10.1007/s12237-018-0383-x

Lodes, K., G.I. Matsumoto, and J. Magnusson. 2018. Education And Research: Testing Hypotheses (EARTH). Marine Technology Society Journal, 52(1): 12–17. https://doi.org/10.4031/MTSJ.52.1.3

Mayot, N., P.A. Matrai, I.H. Ellingsen, M. Steele, K. Johnson, S.C. Riser, and D.D. Swift. 2018. Assessing phytoplankton activities in the seasonal ice zone of the Greenland Sea over an annual cycle. Journal of Geophyiscal Research: Oceans, 123: 8004–8025. https://doi.org/10.1029/2018JC014271

McClain, C. R., C. Nunnally, A.S.A. Chapman, and J.P.  Barry. 2018. Energetic increases lead to niche packing in deep-sea wood falls. Biology Letters, 14(9): 1–5. https://doi.org/10.1098/rsbl.2018.0294

McEwen, R., S.M. Rock, and B. Hobson. 2018. Iceberg wall following and obstacle avoidance by an AUV. 2018 IEEE OES Autonomous Underwater Vehicle Symposium, Porto, November 6–9 2018. IEEE Oceanic Engineering Society, Laboratório de Sistemas e Tecnologia Subaquática, Universidade do Porto.

Muller-Karger, F.E., P. Miloslavich, N.J. Bax, S. Simmons, M.J. Costello, I.S. Pinto, G. Canonico, W. Turner, M. Gill, E. Montes, B.D. Best, J. Pearlman, P. Halpin, D. Dunn, A. Benson, C.S. Martin, L.V. Weatherdon, W. Appeltans, P. Provoost, E. Klein, C.R. Kelble, R.J. Miller, F.P. Chavez, K. Iken, S. Chiba, D. Obura, L.M. Navarro, H.M. Pereira, V. Allain, S. Batten, L. Benedetti-Checchi, J.E. Duffy, R.M. Kudela, L. Rebelo, Y. Shin, and G. Geller. 2018. Advancing Marine Biological Observations and Data Requirements of the Complementary Essential Ocean Variables (EOVs) and Essential Biodiversity Variables (EBVs) Frameworks. Frontiers in Marine Science, 5: 1–15. https://doi.org/10.3389/fmars.2018.00211

Munro, C., S. Siebert, F. Zapata, M. Howison, A. Damian-Serrano, S.H. Church, F.E. Goetz, P.R. Pugh, S.H.D. Haddock, and C.W. Dunn. 2018. Improved phylogenetic resolution within Siphonophora (Cnidaria) with implications for trait evolution. Molecular Phylogenetics and Evolution, 127: 823–833. https://doi.org/10.1016/j.ympev.2018.06.030

Nielsen, K., J. Stachowicz, H. Carter, K. Boyer, M. Bracken, F. Chan, F. Chavez, K. Hovel, M. Kent, K. Nickols, J. Ruesink, J. Tyburczy, and S. Wheeler. 2018. Emerging understanding of the potential role of seagrass and kelp as an ocean acidification management tool in California. California Ocean Science Trust. https://www.oceansciencetrust.org/projects/sav/

Okamoto, N., R.M.R. Gawryluk, J. del Campo, J.F.H. Strassert, J. Lukeš, T.A. Richards, A.Z. Worden, A.E. Santoro, and P.J. Keeling. 2018. A revised taxonomy of Diplonemids including the Eupelagonemidae n. fam. and a type species, Eupelagonema oceanica n. gen. & sp. The Journal of Eukaryotic Microbiology, 66(3): 519–524. https://doi.org/10.1111/jeu.12679

Orsi, W.D., S. Wilken, J. del Campo, T. Heger, E. James, T.A. Richards, P.J. Keeling, A.Z. Worden, and A.E. Santoro. 2018. Identifying protist consumers of photosynthetic picoeukaryotes in the surface ocean using stable isotope probing. Environmental Microbiology, 20: 815–827. https://doi.org/10.1111/1462-2920.14018

Paduan, J.B., R.A. Zierenberg, D.A. Clague, R.M. Spelz, D.W. Caress, G. Troni, H. Thomas, J. Glessner, M.D. Lilley, T. Lorenson, J. Lupton, F. Neumann, M.A. Santa Rosa del Rio, and C.G. Wheat. 2018. Discovery of hydrothermal vent fields on Alarcón Rise and in Southern Pescadero Basin, Gulf of California. Geochemistry, Geophysics, Geosystems, 19: 4788–4819. https://doi.org/10.1029/2018GC007771

Paull, C.K., P.J. Talling, K.L. Maier, D. Parsons, J. Xu, D.W. Caress, R. Gwiazda, E.M. Lundsten, K. Anderson, J.P. Barry, M. Chaffey, T. O'Reilly, K.J. Rosenberger, J.A. Gales, B. Kieft, M. McGann, S.M. Simmons, M. McCann, E.J. Sumner, M.A. Clare, and J. Cartigny. 2018. Powerful turbidity currents driven by dense basal layers. Nature Communications, 9: 1–9. https://doi.org/10.1038/s41467-018-06254-6

Pennington, J.T., and F.P. Chavez. 2018. Decade-scale oceanographic fluctuation in Monterey Bay, California, 1989-2011. Deep Sea Research Part II Topical Studies in Oceanography, 151: 4–15. https://doi.org/10.1016/j.dsr2.2017.07.005

Pitz, K., J. Closek, A. Djurhuus, R.P. Michisaki, K.R. Walz, H. Starks, A.B. Boehm, M. Breitbart, R.P. Kelly, and F.P. Chavez. 2018. Tracking biological communities using 'omics: Examples from Monterey Bay combining different sequencing-based approaches. Workshop on enhancing interoperability & coordination of long-term omics observations, Bremen, February 21–23 2018. AtlantOS, Agriculture and Agri-Food Canada, Genome Canada.

Pugh, P.R., C.W. Dunn, and S.H.D. Haddock. 2018. A description of Tottonophyes enigmatica gen. nov., sp. nov. in a new family of calycophoran siphonophores (Hydrozoa), with notes on calycophoran canals. Zootaxa, 4415: 452–472. http://dx.doi.org/10.11646/zootaxa.4415.3.3. PDF.

Ren, A.S., F. Chai, H. Xue, D.M. Anderson, and F.P. Chavez. 2018. A sixteen-year decline in dissolved oxygen in the central California Current. Scientific Reports, 8(7290): 1–9. https://doi.org/10.1038/s41598-018-25341-8

Rouse, Greg W., S.K. Goffredi, S.B. Johnson, and R.C. Vrijenhoek. 2018. An inordinate fondness for Osedax (Siboglinidae: Annelida): Fourteen new species of bone worms from California. Zootaxa, 4377: 451. http://doi.org/10.11646/zootaxa.4377.4.1

Russell, J. L., I. Kamenkovich, C. Bitz, R. Ferrari, S.T. Gille, P.J. Goodman, R. Hallberg, K.S. Johnson, K. Khazmutdinova, I. Marinov, M.R. Mazloff, S.C. Riser, J.L. Sarmiento, K.G. Speer, L.D. Talley, and R. Wanninkhof. 2018. Metrics for the evaluation of the Southern Ocean in coupled climate models and Earth system models. Journal of Geophysical Research: Oceans, 123: 3120–3143. https://agupubs.onlinelibrary.wiley.com/doi/full/10.1002/2017JC013461

Sato, M., J.A. Barth, K.J. Benoit-Bird, S.D. Pierce, T.J. Cowles, R.D. Brodeur, and W.T. Peterson. 2018. Coastal upwelling fronts as a boundary for planktivorous fish distributions. Marine Ecology Progress Series, 595: 171–186. http://dx.doi.org/10.3354/meps12553

Schultz, D.T., A.A. Kotlobay, R. Ziganshin, A. Bannikov, N.M. Markina, T.V. Chepurnyh, E.S. Shakhova, K. Palkina, S.H.D. Haddock, I.V. Yampolsky, and Y. Oba. 2018. Luciferase of the Japanese syllid polychaete Odontosyllis umdecimdonta. Biochemical and Biophysical Research Communications, 502: 318–323. https://doi.org/10.1016/j.bbrc.2018.05.135

Smith Jr., K.L., H.A. Ruhl, C.L. Huffard, M. Messié, and M. Kahru. 2018. Episodic organic carbon fluxes from surface ocean to abyssal depths during long-term monitoring in NE Pacific. Proceedings of the National Academy of Sciences, 115: 12235–12240. https://doi.org/10.1073/pnas.1814559115

Stanev, E.V., P.M. Poulain, S. Grayek, K.S. Johnson, H. Claustre, and J.W. Murray. 2018. Understanding the dynamics of the oxic-anoxic interface in the Black Sea. Geophysical Research Letters, 45: 864–871. https://doi.org/10.1002/2017GL076206

Stark, J. S., N.P. Roden, G.J. Johnstone, M. Milnes, J.G. Black, S. Whiteside, W. Kirkwood, K. Newbery, S. Stark, E. van Ooijen, B. Tilbrook, E.T. Peltzer, K. Berry, and D. Roberts. 2018. Carbonate chemistry of an in-situ free-ocean CO2 enrichment experiment (antFOCE) in comparison to short term variation in Antarctic coastal waters. Scientific Reports, 8: 1–16. https://doi.org/10.1038/s41598-018-21029-1

Strassert, J.F.H., A. Karnkowska, E. Hehenberger, J. Del Campo, M. Kolisko, N. Okamoto, F. Burki, J. Janouškovec, C.L. Poirier, G.H. Leonard, S. Hallam, T.A. Richards, A.Z. Worden, A.E. Santoro, and P.J. Keeling. 2018. Single cell genomics of uncultured Marine Alveolates (MALVS) shows paraphyly of basal dinoflagellates. The ISME Journal, 12: 304–308. https://doi.org/10.1038/ismej.2017.167

Takeshita, Y., K.S. Johnson, T.R. Martz, J.N. Plant, and J.L. Sarmiento. 2018. Assessment of autonomous pH measurements for determining surface seawater partial pressure of CO2. Journal of Geophyiscal Research, 123: 4003–4013. https://doi.org/10.1029/2017JC013387