Katija, K., B. Woodward, B. Schlining, L. Lundsten, K. Barnard, and K.L.C. Bell. 2019. FathomNet: An open, underwater image repository for automated detection and classification of midwater and benthic targets using machine learning. Third Marine Imaging Workshop, Victoria, British Canada, June 24–28, 2019. Ocean Networks Canada, University of Victoria.
Katija, K., N. Aoki, A. Harned, N. Mushegian, J. Daniels, and K.J. Osborn. 2019. Locomotion in Tomopterids: How do these gelatinous holopelagic worms swim?. Society of Integrative and Comparative Biology Annual Meeting, Tampa, January 3–7, 2019.
Kemp, M. 2019. Underwater thruster fault detection and isolation. AIAA Scitech Forum, San Diego, January 7–11 2019. https://doi.org/10.2514/6.2019-1959
Kiene, R.P., B. Nowinski, K. Esson, C. Preston, R. Marin III, J. Birch, C. Scholin, J. Ryan, and M.A. Moran. 2019. Unprecedented DMSP Concentrations in a Massive Dinoflagellate Bloom in Monterey Bay, CA. Geophysical Research Letters, 46: 12279–12288. https://doi.org/10.1029/2019GL085496
Kolody, B.C., J.P. McCrow, L. Zeigler Allen, F.O. Aylward, K.M. Fontanez, A. Moustafa, M. Moniruzzaman, F.P. Chavez, C.A. Scholin, E.E. Allen, A.Z. Worden, E.F. DeLong, and A.E. Allen. 2019. Diel transcriptional response of a California Current plankton microbiome to light, low iron, and enduring viral infection. The ISME Journal, 13: 2817–2833. https://doi.org/10.1038/s41396-019-0472-2
Koweek, D.A., A. Forde, R. Albright, Y. Takeshita, D.A. Mucciarone, A. Ninokawa, and K. Caldeira. 2019. Carbon isotopic fractionation in organic matter production consistent with benthic community composition across a coral reef flat. Frontiers in Marine Science, 5: 1–14. https://doi.org/10.3389/fmars.2018.00520
Krolicka, A., C. Boccadoro, M.M. Nilsen, E. Demir-Hilton, J. Birch, C. Preston, C. Scholin, and T. Baussant. 2019. Identification of microbial key-indicators of oil contamination at sea through tracking of oil biotransformation: An Arctic field and laboratory study. Science of the Total Environment, 696: 1–13. https://doi.org/10.1016/j.scitotenv.2019.133715
Kuhnz, L.A., J.J. Bizzarro, and D.A. Ebert. 2019. In situ observations of deep-living skates in the eastern North Pacific. Deep Sea Research Part I: Oceanographic Research Papers, 152(103104): 1–11. https://doi.org/10.1016/j.dsr.2019.103104
Le Saout, M., D.A. Clague, and J.B. Paduan. 2019. Evolution of fine-scale segmentation at intermediate-spreading rate ridges. Geochemistry Geophysics Geosystems, 20(8): 3841–3860. https://doi.org/10.1029/2019GC008218
Lee, D.H., Y.M. Lee, J.H. Kim, Y.K. Jin, C.K. Paull, H. Niemann, J.H. Kim, and K.H. Shin. 2019. Discriminative biogeochemical signatures of methanotrophs in different chemosynthetic habitats at an active mud volcano in the Canadian Beaufort Sea. Scientific Reports, 9(17592): 1–13. https://doi.org/10.1038/s41598-019-53950-4
Lee, Y.M., H.J. Noh, D.H. Lee, J.H. Kim, Y.K. Jin, and C.K. Paull. 2019. Bacterial endosymbiont of Oligobrachia sp. (Frenulata) from an active mud volcano in the Canadian Beaufort Sea. Polar Biology, 42: 2305–2312. https://doi.org/10.1007/s00300-019-02599-w
Levin, L.A., B.J. Bett, A.R. Gates, P. Heimbach, B.M. Howe, F. Janssen, A. McCurdy, H.A. Ruhl, P. Snelgrove, K.I. Stocks, D. Bailey, S. Baumann-Pickering, C. Beaverson, M.C. Benfield, D.J. Booth, M. Carreiro-Silva, A. Colaço, M.C. Eblé, A.M. Fowler, K.M. Gjerde, D.O.B. Jones, K. Katsumata, D. Kelley, N. Le Bris, A.P. Leonardi, F. Lejzerowicz, P.I. Macreadie, P. McLean, F. Meitz, T. Morato, A. Netburn, J. Pawlowski, C.R. Smith, S. Sun, H. Uchida, M.F. Vardaro, R. Venkatesan, and R.A. Weller. 2019. Global onserving needs in the deep ocean. Frontiers in Marine Science, 6: 1–32. https://doi.org/10.3389/fmars.2019.00241
Leys, S. P., J.L. Mah, P.R. McGill, L. Hamonic, F.C. De Leo, and A.S. Kahn. 2019. Sponge behavior and the chemical basis of responses: A post-genomic view. Integrative and Comparative Biology, 59(4): 751–764. https://doi.org/10.1093/icb/icz122
Lindsey, N.J., C. Dawe, and J.B. Ajo-Franklin. 2019. Illuminating seafloor faults and ocean dynamics with dark fiber distributed acoustic sensing. Science, 366: 1103–1107. https://doi.org/10.1126/science.aay5881
Lindsey, N.J., C. Dawe, and J.B. Ajo-Franklin. 2019. Photonic seismology in Monterey Bay: Dark fiber DAS illuminates offshore faults and coastal ocean dynamics. EarthArXiv (2019): 1–31. https://doi.org/10.31223/osf.io/7bf92
Litvin, S.Y., J. Barry, C. Lovera, C.A. Boch, E.J. Burton, A.P. DeVogelaere, D. Graves, T.P. Guilderson, A.S. Kahn, C. Kecy, C. King, L.A. Kuhnz, P. McGill, and A.D. Sherman. 2019. The Deep-Sea Coral Observatory (DiSCO) Project. 7th International Symposium on Deep-Sea Corals, Cartagena, July 29 to August 2, 2019.
Lombard, F., E. Boss, A.M. Waite, J. Uitz, L. Stemmann, H.M. Sosik, J. Schulz, J.B. Romagnan, M. Picheral, J. Pearlman, M.D. Ohman, B. Niehoff, K.O. Möller, P. Miloslavich, A. Lara-Lopez, R.M. Kudela, R. Mendez Lopes, L. Karp-Boss, R. Kiko, J.S. Jaffe, M. Hvitfeldt Iversen, J.O. Irisson, H. Hauss, L. Guidi, G. Gorsky, S.L. Carolin Giering, P. Gaube, S. Gallager, G. Dubelaar, R.K. Cowen, F. Carlotti, C. Briseño-Avena, L. Berline, K.J. Benoit-Bird, N.J. Bax, S.D. Batten, S.D. Ayata, and W. Appeltans. 2019. Globally consistent quantitative observations of planktonic ecosystems. Frontiers in Marine Science, 6: 1–21. https://doi.org/10.3389/fmars.2019.00196
Lord, J.P., E.M. Harper, and J.P. Barry. 2019. Ocean acidification may alter predator-prey relationships and weaken nonlethal interactions between gastropods and crabs. Marine Ecology Progress Series, 616: 83–94. https://doi.org/10.3354/meps12921
Maier, K. L., J.A. Gales, C.K. Paull, K.J. Rosenberger, P.J. Talling, S.M. Simmons, R. Gwiazda, M. McGann, M.J.B. Cartigny, E. Lundsten, K. Anderson, M.A. Clare, J. Xu, D. Parsons, J.P. Barry, M. Wolfson-Schwehr, N.M. Nieminski, and E.J. Sumner. 2019. Linking Direct Measurements of Turbidity Currents to Submarine Canyon-Floor Deposits. Frontiers in Earth Science, 7: 1–18. https://doi.org/10.3389/feart.2019.00144
Maier, K.L., K.J. Rosenberger, C.K. Paull, R. Gwiazda, J. Gales, T. Lorenson, J.P. Barry, P.J. Talling, M. McGann, J. Xu, E. Lundsten, K. Anderson, S.Y. Litvin, D.R. Parsons, M.A. Clare, S.M. Simmons, E.J. Sumner, and M.J.B. Cartigny. 2019. Sediment and organic carbon transport and deposition driven by internal tides along Monterey Canyon, offshore California. Deep Sea Research Part I: Oceanographic Research Papers, 153(103108). https://doi.org/10.1016/j.dsr.2019.103108
Martini, S., L. Kuhnz, J. Mallefet, and S.H.D. Haddock. 2019. Distribution and quantification of bioluminescence as an ecological trait in the deep sea benthos. Scientific Reports, 9(14654). https://doi.org/10.1038/s41598-019-50961-z
Maschmeyer, C.H., S.M. White, B.M. Dreyer, and D.A. Clague. 2019. High-Silica Lava Morphology at Ocean Spreading Ridges: Machine-Learning Seafloor Classification at Alarcon Rise. Geosciences, 9: 1–21. https://doi.org/10.3390/geosciences9060245
Masmitjà , I., S. Gomáriz, J. Del Rio, B. Kieft, T.O. O'Reilly, J. Aguzzi, P.J. Bouvet, C. Fannjiang, and K. Katija. 2019. Area-only method for underwater object tracking using autonomous surface vehicles. IEEE/MTS OCEANS Meeting, Seattle, October 27–31, 2019. The Marine Technology Society, the IEEE Oceanic Engineering Society.
Masmitjà, I., S. Gomáriz, J. Del-Rio, B. Kieft, T.O. O'Reilly, P.J. Bouvet, and J. Aguzzi. 2019. Range-only single-beacon tracking of underwater targets from an autonomous vehicle: From theory to practice. IEEE Access, 7: 86946–86963. https://doi.org/10.1109/ACCESS.2019.2924722
McGann, M., and L. Lundsten. 2019. Influence of an upper bathyal whale-fall on benthic Foraminifera, Monterey Canyon, California. Micropaleontology, 65: 435–448. MicroPress MicroAccess.
Messié, M., I. Shulman, S. Martini, and S. Haddock. 2019. Using fluorescence and bioluminescence sensors to characterize auto- and heterotrophic plankton communities. Progress in Oceanography, 171: 76–92. https://doi.org/10.1016/j.pocean.2018.12.010
Micallef, A., A. Camerlenghi, A. Georgiopoulou, D. Garcia-Castellanos, M.A. Gutscher, C. Lolacono, V.A.I. Huvenne, J. Mountjoy, C.K. Paull, T.P. Le Bas, D. Spatola, L. Facchin, and D. Accettella. 2019. Geomorphic evolution of the Malta Escarpment and implications for the Messinian evaporative drawdown in the eastern Mediterranean Sea. Geomorphology, 327: 264–283. https://doi.org/10.1016/j.geomorph.2018.11.012
Miller, S., A. Rassweiler, L. Dee, K.M. Kleisner, T. Mangin, R. Oliveros-Ramos, J. Tam, F.P. Chavez, M. Ñiquen, S.E. Lester, M. Burden, S. Gaines, and C. Costello. 2019. Optimal harvest responses to environmental forecasts depend on resource knowledge and how it can be used. Canadian Journal of Fisheries and Aquatic Sciences, 76: 1495–1502. https://doi.org/10.1139/cjfas-2018-0283
Morse, P., and C.L. Huffard. 2019. Tactical tentacles: New insights on the processes of sexual selection among the Cephalopoda. Frontiers in Physiology, 10: 1–26. https://doi.org/10.3389/fphys.2019.01035
Needham, D.M., C.L. Poirier, E. Hehenberger, V. Jimenez, J.E. Swalwell, A.E. Santoro, and A.Z. Worden. 2019. Targeted metagenomic recovery of four divergent viruses reveals shared and distinctive characteristics of giant viruses of marine eukaryotes. Philosophical Transactions of the Royal Society B, 374: 1–16. https://doi.org/10.1098/rstb.2019.0086
Needham, D.M., S. Yoshizawa, T. Hosaka, C.L. Poirier, C.J. Choi, E. Hehenberger, N.A.T. Irwin, S. Wilken, C.M.Yung, C. Bachy, R. Kurihara, Y. Nakajima, K. Kojima, T. Kimura-Someya, G. Leonard, R.R. Malmstrom, D. Mende, D.K. Olson, Y. Sudo, S. Sudek, T.A. Richards, E.F. DeLong, P.J. Keeling, A.E. Santoro, M. Shirouzu, W. Iwasaki, and A.Z. Worden. 2019. A distinct lineage of giant viruses brings a rhodopsin photosystem to unicellular marine predators. Proceedings of the National Academy of Sciences of the United States of America, 116: 20574–20583. https://doi.org/10.1073/pnas.1907517116
Ninokawa, A., Y. Takeshita, B.M. Jellison, L. Jurgens, and B. Gaylord. 2019. Biological modification of seawater chemistry by an ecosystem engineer, the California mussel, Mytilus californianus. Limnology and Oceanography, 65: 157–172. https://doi.org/10.1002/lno.11258
Northcott, D., J. Sevadjian, D.A. Sancho-Gallegos, C. Wahl, G. Friederich, and F.P. Chavez. 2019. Impacts of urban carbon dioxide emissions on sea-air flux and ocean acidification in nearshore waters. PLoS ONE, 14(3): e0214403. https://doi.org/10.1371/journal.pone.0214403
Nowinski, B., C.B. Smith, C.M. Thomas, K. Esson, R. Marin III, C.M. Preston, J.M. Birch, C.A. Scholin, M. Huntemann, A. Clum, B. Foster, B. Foster, S. Roux, K. Palaniappan, N. Varghese, S. Mukherjee, T.K.B. Reddy, C. Daum, A. Copeland, I.M.A. Chen, N.N. Ivanova, N.C. Kyrpides, T. Glavina del Rio, W.B. Whitman, R.P. Kiene, E.A. Eloe-Fadrosh, and M.A. Moran. 2019. Microbial metagenomes and metatranscriptomes during a coastal phytoplankton bloom. Scientific Data, 6: 1–7. https://doi.org/10.1038/s41597-019-0132-4
Nowinski, B., J. Motard-Cote, M. Landa, C.M. Preston, C.A. Scholin, J.M. Birch, R.P. Kiene, and M.A. Moran. 2019. Microdiversity and temporal dynamics of marine bacterial dimethylsulfoniopropionate genes. Environmental Microbiology, 21: 1687–1701. https://doi.org/10.1111/1462-2920.14560
Omand, M., J. Sugar, K. Buesseler, C. Durkin, M. Estapa, I. Cetinic, E. D'Asaro, C. Lee, H.T. Rossby, A. Wang, A. Adams, K. Katija, and J.P. Barry. (2019). Upcoming EXPORTS technology: Trap cameras, Snocam, and Minions. NASA EXPORTS Science Meeting, Williamsburg, May 6–10, 2019. EXport Processes in the Ocean from Remote Sensing.
Preston, C.M., C.A. Durkin, and K.M. Yamahara. 2019. DNA metabarcoding reveals organisms contributing to particulate matter flux to abyssal depths in the North East Pacific ocean. Deep Sea Research Part II Topical Studies in Oceanography, 173: 1–17. https://doi.org/10.1016/j.dsr2.2019.104708
Priede, I.G., J.C. Drazen, D.M. Bailey, L.A. Kuhnz, and D. Fabian. 2019. Abyssal demersal fishes recorded at station M (34°50′N, 123° 00′W, 4100 m depth) in the northeast Pacific Ocean: An annotated check list and synthesis. Deep Sea Research Part II: Topical Studies in Oceanography, 173(104648). https://doi.org/10.1016/j.dsr2.2019.104648
Ramp, S.R., J.H. Park, Y.J. Yang, F.L. Bahr, and C. Jeon. 2019. Latitudinal structure of solitons in the South China Sea. Journal of Physical Oceanography, 49: 1747–1767. https://doi.org/10.1175/JPO-D-18-0071.1
Reji, L., B.B. Tolar, J.M. Smith, F.P. Chavez, and C.A. Francis. 2019. Depth distributions of Nitrite Reductase (nirK) Gene Variants Reveal Spatial Dynamics of Thaumarchaeal Ecotype Populations in Coastal Monterey Bay. Environmental Microbiology, 21(11): 4032–4045. https://doi.org/10.1111/1462-2920.14753
Reji, L., B.B. Tolar, J.M. Smith, F.P. Chavez, and C.A. Francis. 2019. Differential co-occurrence relationships shaping ecotype diversification within Thaumarchaeota populations in the coastal ocean water column. The ISME Journal, 13: 1144–1158. https://doi.org/10.1038/s41396-018-0311-x
Rennie, J., J.E. Bell, K.E. Kunkel, S. Herring, H. Cullen, and A.M. Abadi. 2019. Development of a submonthly temperature product to monitor near-real-time climate conditions and assess long-term heat events in the United States. Journal of Applied Meteorology and Climatology, 58: 2653–2674. https://doi.org/10.1175/JAMC-D-19-0076.1
Roberts, P.L.D., K. Katija, A.D. Sherman, J. Erickson, and H.E. Ruhl. 2019. A three-dimensional, high-resolution, in situ particle and flow imaging instrument (EyeRIS). Third Marine Imaging Workshop, Victoria, British Canada, June 24–28, 2019. Ocean Networks Canada, University of Victoria.
Roemmich, D., M.H. Alford, H. Claustre, K. Johnson, B. King, J. Moum, P. Oke, W.B. Owens, S. Pouliquen, S. Purkey, M. Scanderbeg, T. Suga, S. Wijffels, N. Zilberman, D. Bakker, M. Baringer, M. Belbeoch, H.C. Bittig, E. Boss, P. Calil, F. Carse, T. Carval, F. Chai, D.O. Conchubhair, F. d'Ortenzio, G. Dall'Olmo, D. Desbruyeres, K. Fennel, I. Fer, R. Ferrari, G. Forget, H. Freeland, T. Fujiki, M. Gehlen, B. Greenan, R. Hallber, T. Hibiya, S. Hosoda, S. Jayne, M. Jochum, G.C. Johnson, K. Kang, N. Kolodziejczyk, A. Kortzinger, P.Y. Le Traon, Y.D. Lenn, G. Maze, K.A. Mork, T. Morris, T. Nagai, J. Nash, A.N. Garabato, A. Olsen, R.R. Pattabhi, S. Prakash, S. Riser, C. Schmechtig, C. Schmid, E. Shroyer, A. Sterl, P. Sutton, L.D. Talley, T. Tanhua, V. Thierry, S. Thomalla, J. Toole, A. Troisi, T.W. Trull, J. Turton, P.J. Velez-Belchi, W. Walczowski, H. Wang, R. Wanninkhof, A.F. Waterhouse, S. Waterman, A. Watson, C. Wilson, A.P.S. Wong, J. Xu, and I. Yasuda. 2019. On the future of Argo: A global, full-depth, multi-disciplinary array. Frontiers in Marine Science, 6: 1–28. https://doi.org/10.3389/fmars.2019.00439
Ryan, J.P., D.E. Cline, J.E. Joseph, T. Margolina, J.A. Santora, R.M. Kudela, F.P. Chavez, J.T. Pennington, C. Wahl, R. Michisaki, K.J. Benoit-Bird, K.A. Forney, A.K. Stimpert, A. DeVogelaere, N. Black, and M. Fischer. 2019. Humpback whale song occurrence reflects ecosystem variability in feeding and migratory habitat of the northeast Pacific. PLoS ONE, 14: 1–24. https://doi.org/10.1371/journal.pone.0222456
Salcedo, D. L., L. A. Soto, and J.B. Paduan. 2019. Trophic structure of the macrofauna associated to deep-vents of the southern Gulf of California: Pescadero Basin and Pescadero Transform Fault. PLoS ONE, 14(11): e0224698. https://doi.org/10.1371/journal.pone.0224698
Sickmann, Z.T., T. Chheda, T.N. Capaldi, K.D. Thomson, C.K. Paull, and S.A. Graham. 2019. Using provenance analysis in an Anthropocene natural laboratory: Detrital signal propagation and sediment budgets. Quaternary Science Reviews, 221: 1–18. https://doi.org/10.1016/j.quascirev.2019.105890
Silveira, C.B., A. Luque, T.N. Roach, H. Villela, A. Barno, K. Green, B. Reyes, E. Rubio-Portillo, S. Mead, M. Hatay, M.J. Vermeij, Y. Takeshita, A. Haas, B. Bailey, and F. Rohwer. 2019. Biophysical and physiological processes causing oxygen loss from coral reefs. Elife, 8(e49114): 1–24. https://doi.org/10.7554/eLife.49114
Smith Jr., K.L., C.L. Huffard, P.R. McGill, A.D. Sherman, T.P. Connolly, S. Von Thun, and L.A. Kuhnz. 2019. Gelatinous zooplankton abundance and benthic boundary layer currents in the abyssal Northeast Pacific: A three-year time series study. Deep Sea Research Part II Topical Studies in Oceanography, 173(104654): 1–9. https://doi.org/10.1016/j.dsr2.2019.104654
Snowden, J., D. Hernandez, J. Quintrell, A. Harper, R. Morrison, J. Morell, and L. Leonard. 2019. The U.S. integrated ocean observing system: Governance milestones and lessons from two decades of growth. Frontiers in Marine Science, 6: 1–21. https://doi.org/10.3389/fmars.2019.00242
Southall, B., K.J. Benoit-Bird, M.A. Moline, and D. Moretti. 2019. Quantifying deep‐sea predator–prey dynamics: Implications of biological heterogeneity for beaked whale conservation. Journal of Applied Ecology, 56: 1040–1049. https://doi.org/10.1111/1365-2664.13334
Spanbauer, T.L., C. Briseño-Avena, K.J. Pitz, and E. Suter. 2019. Salty sensors, fresh ideas: The use of molecular and imaging sensors in understanding plankton dynamics across marine and freshwater ecosystems. Limnology and Oceanography, 5(2): 169–184. https://doi.org/10.1002/lol2.10128
Stark, J. S., E.T. Peltzer, D.I. Kline, A.M. Queiros, E.T. Cox, K. Headley, J. Barry, F. Gazeau, J.W. Runcie, S. Widdicombe, M. Milnes, N.P. Roden, J. Black, S. Whiteside, G. Johnstone, J. Ingels, E. Shaw, L. Bodrossy, J.D. Gaitan-Espitia, W. Kirkwood, and J.P. Gattuso. 2019. Free Ocean CO2 Enrichment (FOCE) experiments: Scientific and technical recommendations for future in situ ocean acidification projects. Progress in Oceanography, 172: 89–107. https://doi.org/10.1016/j.pocean.2019.01.006
Sulpis, O., C.O. Dufour, D.S. Trossman, A.J. Fassbender, B.K. Arbic, B.P. Boudreau, J.P. Dunne, and A. Mucci. 2019. Reduced CaCO3 flux to the seafloor and weaker bottom current speeds curtail benthic CaCO3 dissolution over the 21st Century. Global Biogeochemical Cycles, 33: 1654–1673. https://doi.org/10.1029/2019GB006230
Todd, R.E., F.P. Chavez, S. Clayton, S. Cravatte, M. Goes, M. Graco, X. Lin, J. Sprintall, N.V. Zilberman, M. Archer, J. Arístegui, M. Balmaseda, J.M. Bane, M.O. Baringer, J.A. Barth, L.M. Beal, P. Brandt, P.H.R. Calil, E. Campos, L.R. Centurioni, M.P. Chidichimo, M. Cirano, M.F. Cronin, E.N. Curchitser, R.E. Davis, M. Dengler, B. deYoung, S. Dong, R. Escribano, A.J. Fassbender, S.E. Fawcett, M. Feng, G.J. Goni, A.R. Gray, D. Gutiérrez, D. Hebert, R. Hummels, S. Ito, M. Krug, F. Lacan, L. Laurindo, A. Lazar, C.M. Lee, M. Lengaigne, N.M. Levine, J. Middleton, I. Montes, M. Muglia, T. Nagai, H.I. Pavelsky, J.B. Palter, H.E. Phillips, A. Piola, A.J. Plueddemann, B. Qiu, R.R. Rodrigues, M. Roughan, D.L. Rudnick, R.R. Rykaczewski, M. Saraceno, H. Seim, A.S. Gupta, L. Shannon, B.M. Sloyan, A.J. Sutton, L. Thompson, A.K. van der Plas, D. Volkov, J. Wilkin, D. Zhang, and L. Zhang. 2019. Global perspectives on observing ocean boundary current systems. Frontiers in Marine Science, 6: 1–38. https://doi.org/10.3389/fmars.2019.00423
Vieira, R.P., B.J. Bett, D.O.B. Jones, J.M. Durden, K.J. Morris, M.R. Cunha, C.N. Trueman, and H.A. Ruhl. 2019. Deep-sea sponge aggregations (Pheronema carpenteri) in the Porcupine Seabight (NE Atlantic) potentially degraded by demersal fishing. Progress in Oceanography, 183(102189). https://doi.org/10.1016/j.pocean.2019.102189
Wideman, J.G., A. Monier, R. Rodriguez-Martinez, G. Leonard, E. Cook, C.L. Poirier, F. Maguire, D.S. Milner, N.A.T. Irwin, K. Moore, A.E. Santoro, P.J. Keeling, A.Z. Worden, and T.A. Richards. 2019. Unexpected mitochondrial genome diversity revealed by targeted single-cell genomics of heterotrophic flagellated protists. Nature Microbiology, 5: 154–165. https://doi.org/10.1038/s41564-019-0605-4
Wilken, S., C. Yung, M. Hamilton, K. Hoadley, J. Nzongo, C. Eckmann, M. Corrochano Lugue, C.L. Poirier, and A.Z. Worden. 2019. The need to account for cell biology on characterising predatory mixotrophs in aquatic environments. Philosophical Transactions of the Royal Society B, 374: 1–13. https://doi.org/10.1098/rstb.2019.0086
Wilken, S., C.J. Choi, and A. Z. Worden. 2019. Contrasting mixotrophic lifestyles reveal different ecological niches in two closely related marine protists. Journal of Phycology, 56: 52–67. https://doi.org/10.1111/jpy.12920
Winnikoff, J.R., W.R. Francis, E.V. Thuesen, and S.H.D. Haddock. 2019. Combing transcriptomes for secrets of deep-sea survival: Environmental diversity drives patterns of protein evolution. Integrative and Comparative Biology, 59(4): 786–798. https://doi.org/10.1093/icb/icz063. PDF.
Yamahara, K.M., C.M. Preston, J. Birch, K.R. Walz, R. Marin III, S. Jensen, D. Pargett, B. Roman, W. Ussler III, Y. Zhang, J. Ryan, B. Hobson, B. Kieft, B.Y. Raanan, K.D. Goodwin, F.P. Chavez, and C.A. Scholin. 2019. In situ Autonomous Acquisition and Preservation of Marine Environmental DNA Using an Autonomous Underwater Vehicle. Frontiers in Marine Science, 6: 1–14. https://doi.org/10.3389/fmars.2019.00373
Zhang, Y., B. Kieft, B. Hobson, J.P. Ryan, B. Barone, C.M. Preston, B. Roman, B.Y. Raanan, R. Marin III, T.C. O'Reilly, C.A. Rueda, and D. Pargett. 2019. Autonomous tracking and sampling of the deep chlorophyll maximum layer in an open-ocean eddy by a long-range autonomous underwater vehicle. IEEE Journal of Oceanic Engineering, 45(4): 1308–1321. https://doi.org/10.1109/JOE.2019.2920217
Zhang, Y., C. Rueda, B. Kieft, J.P. Ryan, C. Wahl, T.C. O'Reilly, T. Maughan, and F.P. Chavez. 2019. Autonomous tracking of an oceanic thermal front by a Wave Glider. Journal of Field Robotics, 36(5): 940–954. https://doi.org/10.1002/rob.21862
Zhang, Y., J.P. Ryan, B. Kieft, B.W. Hobson, R.S. McEwen, M.A. Godin, J.B. Harvey, B. Barone, J.G. Bellingham, J.M. Birch, C.A. Scholin, and F.P. Chavez. 2019. Targeted sampling by autonomous underwater vehicles. Frontiers in Marine Science, 6: 1–12. https://doi.org/10.3389/fmars.2019.00415
Zhang, Z., B.H. Robison, and S. Ramanathan. 2019. Marine biology requires a new line of inquiry in materials research. MRS Bulletin, 44: 597–599. https://doi.org/10.1557/mrs.2019.186
Zimmerman, A.E., C. Howard-Varona, D.M. Needham, S. John, A.Z. Worden, M.B. Sullivan, J.R. Waldbauer, and M.L. Coleman. 2019. Metabolic and biogeochemical consequences of viral infection in aquatic ecosystems. Nature Reviews Microbiology, 18: 21–34. https://doi.org/10.1038/s41579-019-0270-x
Zimmerman, R.C., C. Bachy, X. Ma, S. Roux, H.B. Jang, M.B. Sullivan, J.R. Waldbauer, and A.Z. Worden. 2019. Closely related viruses of the marine picoeukaryotic alga Ostreococcus lucimarinus exhibit different ecological strategies. Environmental Microbiology, 21: 2148–2170. https://doi.org/10.1111/1462-2920.14608
Albright, R., Y. Takeshita, D.A. Koweek, A. Ninokawa, K. Wolfe, T. Rivlin, Y. Nebuchina, J. Young, and K. Caldeira. 2018. Carbon dioxide addition to coral reef waters suppresses net community calcification. Nature, 555: 516–519. http://doi.org/10.1038/nature25968
Archer, S.K., A.S. Kahn, S.P. Leys, T. Norgard, F. Girard, C. Du Preez, and A. Dunham. 2018. Pyrosome consumption by benthic organisms during blooms in the NE Pacific and Gulf of Mexico. Ecology, 99: 981–984. https://doi.org/10.1002/ecy.2097
Ardron, J.A., H.A. Ruhl, and D.O.B. Jones. 2018. Incorporating transparency into the governance of deep-seabed mining in the area beyond national jurisdiction. Marine Policy, 89: 58–66. https://doi.org/10.1016/j.marpol.2017.11.021
Arranz, P., K.J. Benoit-Bird, B.L. Southall, J. Calambokidis, A.S. Friedlander, and P.L. Tyack. 2018. Risso's dolphins plan foraging dives. Journal of Experimental Biology, 221(4): 1–9. https://doi.org/10.1242/jeb.165209b
Arteaga, L., N. Haëntjens, E.S. Boss, K.S. Johnson, and J.L. Sarmiento. 2018. Assessment of export efficiency equations in the Southern Ocean applies to satellite-based net primary production. Journal of Geophyiscal Research: Oceans, 123: 2945–2964. https://doi.org/10.1002/2018JC013787
Babonis, L., M.B. Debiasse, W.R. Francis, L.M. Christianson, S.H.D. Haddock, M.Q. Martindale, and J.F. Ryan. 2018. Integrating embryonic development and evolutionary history to characterize tentacle-specific cell types in a ctenophore. Molecular Biology and Evolution, 35: 2940–2956. https://doi.org/10.1093/molbev/msy171
Bachy, C., C.J. Charlesworth, A.M. Chan, F.J. Finke, C.H. Wong, C.L. Wei, S. Sudek, M.L. Coleman, C.A. Suttle, and A.Z. Worden. 2018. Transcriptional responses of the marine green alga Micromonas pusilla and an infecting prasinovirus under different phosphate conditions. Environmental Microbiology, 20: 2898–2912. https://doi.org/10.1111/1462-2920.14273
Benoit-Bird, K.J., T.P. Welch, C.M. Waluk, J.A. Barth, I. Wangen, P. McGill, C. Okuda, G.A. Hollinger, M. Sato, and S. McCammon. 2018. Equipping an underwater glider with a new echosounder to explore ocean ecosystems. Limnology and Oceanography: Methods, 16: 734–749. https://doi.org/10.1002/lom3.10278
Birch, J.M. 2018. Collecting and processing samples in remote and dangerous places: The environmental sample processor as a case study. Pure and Applied Chemistry, 90: 1625–1630. https://doi.org/10.1515/pac-2018-0201
Birch, J.M., B. Barone, E. DeLong, G. Foreman, K. Gomes, B. Hobson, S. Jensen, D.M. Karl, B. Kieft, T. O'Reilly, D. Pargett, C. Preston, B. Roman, A. Romano, J. Ryan, C.A. Scholin, W. Ussler, K. Yamahara, and Y. Zhang. 2018. Autonomous targeted sampling of the deep chlorophyll maximum layer in a subtropical north Pacific eddy. OCEANS 2018 MTS/IEEE Charleston, pp. 1-5. doi: 10.1109/OCEANS.2018.8604898.
Bowers, H.A., J.P. Ryan, K. Hayashi, A.L. Woods, R. Marin III, G.J. Smith, K.A. Hubbard, G. Doucette, C. Mikulski, A.G. Gellene, Y. Zhang, R. Kudela, D. Caron, J. Birch, and C. Scholin. 2018. Diversity and toxicity of Pseudo-nitzschia species in Monterey Bay: Perspectives from targeted and adaptive sampling. Harmful Algae, 78: 129–141. https://doi.org/10.1016/j.hal.2018.08.006
Branch, A., M.M. Flexas, B. Claus, A.F. Thompson, Y. Zhang, E.B. Clark, S. Chien, D. Fratantoni, J.C. Kinsey, B. Hobson, B. Kieft, and F.P. Chavez. 2018. Front delineation and tracking with multiple underwater vehicles. Journal of Field Robotics, 36(3): 568–586. https://doi.org/10.1002/rob.21853
Breitburg, D., L.A. Levin, A. Oschlies, M. Grégoire, F.P. Chavez, D.J. Conley, V. Garçon, D. Gilbert, D. Gutiérrez, K. Isensee, G.S. Jacinto, K.E. Limburg, I. Montes, S.W.A. Naqvi, G.C. Pitcher, N.N. Rabalais, M.R. Roman, K.A. Rose, B.A. Seibel, M. Telszewski, M. Yasuhara, and J. Zhang. 2018. Declining oxygen in the global ocean and coastal waters. Science, 359: 13. https://doi.org/10.1126/science.aam7240
Brewer, P.G. 2018. Coastal ocean warming adds to CO2 burden. Eos, 99: May 29, 2018. https://doi.org/10.1029/2018EO099877
Brewer, P.G. 2018. Multiple choices exist for changing ocean oxygen concentrations. Eos, 99: May 14, 2018. https://doi.org/10.1029/2018EO098367
Brewer, P.G., E.T.Peltzer, and P.M. Walz. 2018. How much H2O is there in the ocean? The structure of water in sea water. Journal of Geophyiscal Research: Oceans, 124: 212–226. https://doi.org/10.1029/2018JC014457
Burford, B.P., K.L. Schlining, K.R. Reisenbichler, and B.H. Robison. 2018. Pelagic shrimp play dead in deep oxygen minima. PLoS ONE, 13: 1–10. https://doi.org/10.1371/journal.pone.0207249
Carranza, M.M., S.T. Gille, P.J.S. Franks, K.S. Johnson, R. Pinkel, and J.B. Girton. 2018. When mixed layers are not mixed. Storm-driven mixing and bio-optical vertical gradients in mixed layers of the Southern Ocean. Journal of Geophyiscal Research, 123: 7264–7289. https://doi.org/10.1029/2018JC014416
Castro, C.G., F.P. Chavez, J.T. Pennington, R. Durazo, and C.A. Collins. 2018. Temporal variability of downward fluxes of organic carbon off Monterey Bay. Deep Sea Research Part II Topical Studies in Oceanography, 151: 89–101. https://doi.org/10.1016/j.dsr2.2018.07.001
Chavez, F.P., C.A. Collins, and K.H. Coale. 2018. Studies of the California Current, Part 3. Deep Sea Research Part II: Topical Studies in Oceanography, 151: 146. https://doi.org/10.1016/j.dsr2.2018.05.002
Chavez, F.P., J. Sevadjian, C. Wahl, J. Friederich, and G.E. Friederich. 2018. Measurement of pCO2 and pH from an autonomous surface vehicle in a coastal upwelling system. Deep Sea Research Part II Topical Studies in Oceanography, 151: 137–146. https://doi.org/10.1016/j.dsr2.2017.01.001
Christiansen, S., H.J. Hoving, F. Schütte, H. Hauss, J. Karstensen, A. Körtzinger, S.M. Schröder, L. Stemmann, B. Christiansen, M. Picheral, P. Brandt, B. Robison, R. Koch, and R. Kiko. 2018. Particulate matter flux interception in oceanic mesoscale eddies by the polychaete Poeobius sp.. Limnology and Oceanography, 63: 2093–2109. https://doi.org/10.1002/lno.10926
Clague, D., J. Paduan, B. Dreyer, W.W. Chadwick Jr., K. Rubin, M.R. Perfit, and A.T. Fundis. 2018. Chemical variations in the 1998, 2011, and 2015 lava flows from axial seamount, Juan de Fuca Ridge: Cooling during ascent, lateral transport, and flow. Geochemistry Geophysics Geosystems, 19(9): 2915–2933. https://agupubs.onlinelibrary.wiley.com/doi/abs/10.1029/2018GC007708
Clague, D., K.M. Marsaglia, B.L. Cousens, and J.B. Paduan. 2018. Oligocene and Miocene volcanics in the sedimentary forearc of the Outer California Borderland. Society for Sedimentary Geology, 110. https://doi.org/10.2110/sepmsp.110.04
Clague, D.A., D.W. Caress, B.M. Dreyer, L. Lundsten, J.B. Paduan, R.A. Portner, R. Spelz-Madero, J.A. Bowles, P.R. Castillo, R. Guardado-France, M. Le Saout, J.F. Martin, M.A. Santa Rosa-del Rio, and R.A. Zierenber. (2018). Geology of the Alarcon Rise, Southern Gulf of California. Geochemistry Geophysics Geosystems, 19: 807–837. http://doi.org/10.1002/2017GC007348
Coale, K., M. Prince, R. Muller, S. Lamerdin, F.P. Chavez, and C. Collins. 2018. Introduction to the California Current Studies, Part 3, including a brief description of R/V Point Sur and her contributions to graduate research and education, 1986-2016. Deep Sea Research Part II Topical Studies in Oceanography, 151: 1–3. https://doi.org/10.1016/j.dsr2.2018.05.002
Cyronak, T., A.J. Andersson, S. D'Angelo, P.J. Bresnahan, C. Davidson, T. Kindeberg, J. Pennise, Y. Takeshita, and M. White. 2018. Short-term spatial and temporal carbonate chemistry variability in two contrasting seagrass meadows: Implications for pH buffering capacities. Estuaries and Coasts, 41: 1282–1296. http://dx.doi.org/10.1007/s12237-017-0356-5
Djurhuus, A., K. Pitz, N.A. Sawaya, J. Rojas Márquez, B. Michaud, E. Montes, F.E. Muller-Karger, and M. Breitbart. 2018. Evaluation of marine zooplankton community structure through environmental DNA metabarcoding. Limnology and Oceanography Methods, 16: 209–221. https://doi.org/10.1002/lom3.10237
Dornelas, M., L.H. Antao, E. Moyes, A.E. Bates, A.E. Magurran, D. Adam, A.A. Akhmetzhanova, W. Appeltans, J.M. Arcos, H. Arnold, N. Ayyappan, G. Badihi, A.H. Baird, M. Barbosa, T.E. Barreto, C. Bassler, A. Bellgrove, J. Belmaker, L. Benedetti-Checchi, B.J. Bett, A.D. Bjorkman, M. Blazewicz, S.A. Blowes, C.P. Bloch, T.C. Bonebrake, S. Boyd, M. Brandford, A.J. Brooks, J.H. Brown, H. Bruelheide, P. Budy, F. Carvalho, E. Castaneda-Moya, C.A. Chen, J.F. Chamblee, T.J. Chase, L.S. Collier, S.K. Collinge, R. Condit, E.J. Cooper, J.H.C. Cornelissen, U. Cotano, S.K. Crow, G. Damasceno, C.H. Davies, R.A. Davis, F.P. Day, S. Degraer, T.S. Doherty, T.E. Dunn, G. Durigan, J.E. Duffy, D. Edelist, G.J. Edgar, R. Elahi, S.C. Elmendorf, A. Enemar, S.K.M. Ernest, R. Escribano, M. Estiarte, B.S. Evans, T.Y. Fan, F.T. Farah, L.L. Fernandes, F.Z. Farneda, A. Fidelis, R. Fitt, A.M. Fozaa, G.A.D.C. Franco, G.E. Frank, W.R. Fraser, H. Garcia, R.C. Gatti, O. Givan, E. Gorgone-Barbosa, W.A. Gould, C. Gries, G.D. Grossman, J.R. Gutierrez, S. Hale, M.E. Harmon, J. Harte, G. Haskins, D.L. Henshaw, L. Hermanutz, P. Hidalgo, P. Higuchi, A. Hoey, G.V. Hoey, A. Hofgaard, K. Holeck, R.D. Hollister, R. Holmes, M. Hoogenboom, C. Hsieh, S.P. Hubbell, F. Huettmann, C.L. Huffard, A.H. Hurlbert, N.M. Ivanauskas, D. Janik, U. Jandt, A. Jazdzewska, T. Johannessen, J. Johnstone, J. Jones, F.A.M. Jones, J. Kang, T. Kartawijaya, E.C. Keeley, D.A. Kelt, R. Kinnear, K. Klanderud, H. Knutsen, C.C. Koenig, A.R. Kortz, K. Kral, L.A. Kuhnz, C.Y. Kuo, D.J. Kushner, C. Laguionie-Marchias, L.T. Lancaster, C.M. Lee, J.S. Lefcheck, E. Levesque, D. Lightfoot, F. Lloret, J.D. Lloyd, A. Lopez-Baucells, M. Louzano, J.S. Madin, B. Magnusson, S. Malamud, I. Matthews, K.P. McFarland, B. McGill, D. MvKnight, W.O. McLarney, J. Meador, P.L. Meserve, D.J. Metcalfe, C.F.J. Meyer, A. Michelsen, N. Milchakova, T. Moens, E. Moland, J. Moore, C.M. Moreira, J. Miller, G. Murphy, I.H. Myers-Smith, R.W. Myster, A. Naumov, F. Neat, J.A. Nelson, M.P. Nelson, S.F. Newton, N. Norden, J.C. Oliver, E.M. Olsen, V.G. Onipchenko, K. Pabis, R.J. Pabst, A. Paquette, S. Pardede, D.M. Paterson, R. Pelissier, J. Penuelas, A. Perez-Matus, O. Pizarro, F. Pomati, E. Post, H.H.T. Prins, J.C. Priscu, P. Provoost, K.L. Prudic, E. Pulliainen, B.R. Ramesh, O.M. Ramos, A. Rassweiler, J.E. Rebelo, D.C. Reed, P.B. Reich, S.M. Remillard, A.J. Richardson, I. van Rijn, R. Rocha, V.H. Rivera-Monroy, C. Rixen, K.P. Robison, R.R. Rodrigues, D.C. Rossa-Feres, L. Rudstam, H. Ruhl, C.S. Ruz, E.M. Sampaio, N. Rybicki, A. Rypel, S. Sal, B. Salgado, F.A.M. Santos, A.P. Savassi-Coutinho, S. Scanga, J. Schmidt, R. Schooley, F. Setiawan, K.T. Shao, G.R. Shaver, S. Sherman, T.W. Sherry, J. Sicinski, C. Sievers, A.C. da Silva, F.R. da Silva, F.L. Silveira, J. Slingsby, T. Smart, S.J. Snell, N.A. Soudzilovskaia, G.B.G. Souza, F.M. Souza, V.C. Souza, C.D. Stallings, R. Stanforth, E.H. Stanley, J.M. Sterza, M. Stevens, R. Stuart-Smith, J.M. Suarez, S. Supp, J.Y. Tamashiro, S. Tarigan, G.P. Thiede, S. Thorn, A. Tolvanen, M.T.Z. Toniato, O. Totland, R.R. Twilley, G. Vaitkus, N. Valdivia, M.I. Ballejo, T.J. Valone, C. Van Colen, J. Vanaverbeke, F. Venturoli, H.M. Verheye, M. Vianna, R.P. Vieira, T. Vrska, C.Q. Vu, L.V. Vu, R.B. Waide, C. Waldock, D. Watts, S. Webb, T. Wesotowski, E.P. White, C.E. Widdicombe, D. Wilgers, R. Williams, S.B. Williams, M. Williamson, M.R. Willig, T.J. Willis, S. Wipf, K.D. Woods, E.J. Woehler, K. Zawada, and M.L. Zettler. 2018. BioTIME: A time-series database for the Anthropocene. Global Ecology and Biogeography, 27(7): 760–786. http://doi.org/10.1111/geb.12729
Drazen, J.C., C.R. Smith, K. Gjerde, W. Au, J. Black, G. Carter, M. Clark, J.M. Durden, P. Dutrieux, E. Goetze, S. Haddock, M. Hatta, C. Hauton, P. Hill , J. Koslow, A.B. Leitner, C. Measures, A. Pacini, F. Parrish, T. Peacock, J. Perelman, T. Sutton, C. Taymans, V. Tunnicliffe, L. Watling, H. Yamamoto, E. Young, and A.F. Ziegler. 2018. Report of the workshop evaluating the nature of midwater mining plumes and their potential effects on midwater ecosystems. Research Ideas and Outcomes, 5: e33527. https://doi.org/10.3897/rio.5.e33527
Dunlop, K.M., T. Jarvis, K.J. Benoit-Bird, C.M. Waluk, D.W. Caress, H. Thomas, and K.L. Smith Jr. 2018. Detection and characterization of deep-sea benthopelagic animals from an autonomous underwater vehicle with a multibeam echosounder: a proof of concept and description of data-processing methods. Deep Sea Research 1, 134: 64–69. https://doi.org/10.1016/j.dsr.2018.01.006
Fassbender, A.J., A. Bourbonnais, S. Clayton, P. Gaube, M. Omand, P.J. Franks, M.A. Altabet, and D.J. McGillicuddy Jr. 2018. Interpreting mosaics of ocean biogeochemistry. EOS, 99: 1–14. https://doi.org/10.1029/2018EO109707
Fassbender, A.J., J.B. Palter, M.C. Long, T. Ito, S.P. Bishop, and M.F. Cronin. Ocean carbon hot spots: A joint US CLIVAR and OCB workshop report (No. 2018-3). Washington, DC: U.S. CLIVAR Project Office, 2018. https://doi.org/10.5065/d6z036zs