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2021

Smith, Jr., K.L., A.D. Sherman, P.R. McGill, R.G. Henthorn, J. Ferreira, T.P. Connolly, and C.L. Huffard. 2021. Abyssal Benthic Rover, an autonomous vehicle for long-term monitoring of deep-ocean processes. Science Robotics, 6(60): eabl4925. https://doi.org/10.1126/scirobotics.abl4925

Stefanoudis, P. V., L.M. Biancani, S. Cambronero-Solano, M.R. Clark, J.T. Copley, E. Easton, F. Elmer, S.H.D. Haddock, S. Herrera, I.S. Iglesias, A.M. Quattrini, J. Sigwart, C. Yesson, and A.G. Glover. 2021. Moving conferences online: lessons learned from an international virtual meeting. Proceedings of the Royal Society B, 288: 1–7. https://doi.org/10.1098/rspb.2021.1769

Takeshita, Y., B.D. Jones, K.S. Johnson, F.P. Chavez, D.L. Rudnick, M. Blum, K. Conner, S. Jensen, J.S. Long, T. Maughan, K.L. Mertz, J.T. Sherman, and J.K. Warren. 2021. Accurate pH and O2 measurements from Spray underwater gliders. Journal of Atmospheric and Oceanic Technology, 38: 181–195. https://doi.org/10.1175/JTECH-D-20-0095.1

Takeshita, Y., J.K. Warren, X. Liu, R.S. Spaulding, R.H. Byrne, B.R. Carter, M.D. DeGrandpre, A. Murata, and S. Watanabe. 2021. Consistency and stability of purified meta-cresol purple for spectrophotometric pH measurements in seawater. Marine Chemistry, 236: 1–10. https://doi.org/10.1016/j.marchem.2021.104018

Vega-Ramirez, L.A., R.M. Spelz-Madero, R. Negrete-Aranda, F. Neumann, D.W. Caress, D.A. Clague, J.B. Paduan, J. Contreras, and J.G. Peña-Dominguez. 2021. A new method for fault-scarp detection using linear discriminant analysis in high-resolution bathymetry data from the Alarcon Rise and Pescadero Basin. Tectonics, 40(12): 1–18. https://doi.org/10.1029/2021TC006925

Walton, M.A.L., C.K. Paull, G. Cochrane, J. Addison, D. Caress, R. Gwiazda, D. Kennedy, E. Lundsten, and A. Papesh. California Deepwater Investigations and Groundtruthing (Cal DIG) I: Fault and Shallow Geohazard Analysis Offshore Morro Bay, Volume 2. Camarillo, CA: US Department of the Interior, Bureau of Ocean Energy Management, 2021. https://espis.boem.gov/final%20reports/BOEM_2021-044.pdf   

Winnikoff, J.R., S.H.D. Haddock, and I. Budin. 2021. Depth- and temperature-specific fatty acid adaptations in ctenophores from extreme habitats. Journal of Experimental Biology, 224: 1–10. https://doi.org/10.1242/jeb.242800

Wolfe, W.H., K.M. Shipley, P.J. Bresnahan, Y. Takeshita, T. Wirth, and T.R. Martz. 2021. Technical note: Stability of tris pH buffer in artificial seawater stored in bags. Ocean Science, 17: 819–831. https://doi.org/10.5194/os-17-819-2021

Yoerger, D.R., A.F. Govindarajan, J.C. Howland, J.K. Llopiz, P.H. Wiebe, M. Curran, J. Fujii, D. Gomez-Ibanez, K. Katija, B.H. Robison, B.W. Hobson, M. Risi, and S.M. Rock. 2021. Mesobot: A hybrid underwater robot for multidisciplinary investigation of the ocean twilight zone. Science Robotics, 6(55): 1–22. https://doi.org/10.1126/scirobotics.abe1901

Yoerger, D.R., A.F. Govindarajan, J.C. Howland, P.H. Wiebe, M. Curran, J. Fujii, D. Gomez-Ibanez, K. Katija, B.H. Robison, B.W. Hobson, M. Risi, and S.M. Rock. 2021. A hybrid underwater robot for multidisciplinary investigation of the ocean twilight zone. Science Robotics, 6(55): eabe1901. https://doi.org/10.1126/scirobotics.abe1901

Zhang, Y., B. Kieft, B.W. Hobson, B.Y. Raanan, S. Urmy, K.J. Pitz, C.M. Preston, B. Roman, K.J. Benoit-Bird, J.M. Birch, F.P. Chavez, and C.A. Scholin. 2021. Persistent sampling of vertically migrating biological layers by an autonomous underwater vehicle within the beam of a seabed-mounted echosounder. IEEE Journal of Oceanic Engineering, 46: 497–508. https://doi.org/10.1109/JOE.2020.2982811

Zhang, Y., J.P. Ryan, B.W. Hobson, B. Kieft, A. Romano, B. Barone, C.M. Preston, B. Roman, B.Y. Raanan, D. Pargett, M. Dugenne, A.E. White, F. Henderikx Freitas, S. Poulos, S.T. Wilson, E.F. DeLong, D.M. Karl, J.M. Birch, J.G. Bellingham, and C.A. Scholin. 2021. A system of coordinated autonomous robots for Lagrangian studies of microbes in the oceanic deep chlorophyll maximum. Science Robotics, 6: 1–11. https://doi.org/10.1126/scirobotics.abb9138

2020

A.E. Simonis, K.A. Forney, S. Rankin, J. Ryan, Y. Zhang, A. DeVogelaere, J. Joseph, T. Margolina, A. Krumpel, and S. Baumann-Pickering. 2020. Seal Bomb Noise as a Potential Threat to Monterey Bay Harbor Porpoise. Frontiers in Marine Science, 7. https://doi.org/10.3389/fmars.2020.00142

Aalto, E.A., J.P. Barry, C.A. Boch, S.Y. Litvin, F. Micheli, C.B. Woodson, and G.A. De Leo. 2020. Abalone populations are most sensitive to environmental stress effects on adult individuals. Marine Ecology Progress Series, 643: 75–85. https://doi.org/10.3354/meps13320

Andruszkiewicz, E.A., K.M. Yamahara, C.J. Closek, and A.B. Boehm. 2020. Quantitative PCR assays to detect whales, rockfish, and common murre environmental DNA in marine water samples of the Northeastern Pacific. PLoS ONE, 15: 1–19. https://doi.org/10.1371/journal.pone.0242689

Bach, L.T., A.J. Paul, T. Boxhammer, E. Von der Esch, M. Graco, K.G. Schulz, E. Achterberg, P. Aguayo, J. Arístegui, P. Ayón, I. Baños, A. Bernales, A.S. Boegeholz, F. Chavez, G. Chavez, S.M. Chen, K. Doering, A. Filella, M. Fischer, P. Grasse, M. Haunost, J. Hennke, N. Hernández-Hernández, M. Hopwood, M. Igarza, V. Kalter, L. Kittu, P. Kohnert, J. Ledesma, C. Lieberum, S. Lischka, C. Löscher, A. Ludwig, U. Mendoza, J. Meyer, J. Meyer, F. Minutolo, J.O. Cortes, J. Piiparinen, C. Sforna, K. Spilling, S. Sanchez, C. Spisla, M. Sswat, M. Zavala Moreira, and U. Riebesell. 2020. Factors controlling plankton community production, export flux, and particulate matter stoichiometry in the coastal upwelling system off Peru. Biogeosciences, 17: 4831–4852. https://doi.org/10.5194/bg-17-4831-2020

Beas‐Luna, R., F. Micheli, C.B. Woodson, M. Carr, D. Malone, J. Torre, C.A. Boch, J.E. Caselle, M. Edwards, J. Freiwald, S.L. Hamilton, A. Hernandez, B. Konar, K.J. Kroeker, J. Lorda, G. Montaño‐Moctezuma, and G. Torres‐Moye. 2020. Geographic variation in responses of kelp forest communities of the California Current to recent climatic changes. Global Change Biology, 26: 6457–6473. https://doi.org/10.1111/gcb.15273

Benoit-Bird, K.J., and C.M. Waluk. 2020. Exploring the promise of broadband fisheries echosounders for species discrimination with quantitative assessment of data processing effects. The Journal of the Acoustical Society of America, 147: 411–427. https://doi.org/10.1121/10.0000594

Benoit-Bird, K.J., B.L. Southall, M.A. Moline, D.E. Claridge, C.A. Dunn, K.A. Dolan, and D.J. Moretti. 2020. Critical threshold identified in the functional relationship between beaked whales and their prey. Marine Ecology Progress Series, 654:116. https://doi.org/10.3354/meps13521

Bessho-Uehara, M., N. Yamamoto, S. Shigenobu, H. Mori, K. Kuwata, and Y. Oba. 2020. Kleptoprotein bioluminescence: Parapriacanthus fish obtain luciferase from ostracod prey. Science Advances, 6: 1–10. https://doi.org/10.1126/sciadv.aax4942

Bessho-Uehara, M., W. Huang, W.L. Patry, W. E. Browne, J.K. Weng, and S.H.D. Haddock. 2020. Evidence for de novo biosynthesis of the luminous substrate coelenterazine in ctenophores. iScience, 23: 1–11. https://doi.org/10.1016/j.isci.2020.101859

Bessho-Uehara, M., W. R. Francis, and S. Haddock. 2020. Biochemical characterization of diverse deep-sea anthozoan bioluminescence systems. Marine Biology, 167: 1–19. https://doi.org/10.1007/s00227-020-03706-w

Boch, C.A., A. DeVogelaere, E.J. Burton, C. King, C. Lovera, K. Buck, J. Lord, L. Kuhnz, M. Kaiser, C. Reid-Rose, and J.P. Barry. 2020. Guide to translocating coral fragments for deep-sea restoration. National Marine Sanctuary Conservation Science Series: ONMS-20-10. https://repository.library.noaa.gov/view/noaa/25571

Boulais, O., B. Woodward, L. Lundsten, K. Barnard, B. Schlining, K.C. Bell, and K. Katija. 2020. FathomNet: An underwater image training database for ocean exploration and discovery. arXiv: 2007.00114. https://doi.org/10.48550/arXiv.2007.00114

Breusing, C., D.T. Schultz, S. Sudek, A.Z. Worden, and C. Young. 2020. High-contiguity genome assembly of the chemosynthetic gammaproteobacterial endosymbiont of the cold seep tubeworm Lamellibrachia barhami. Molecular Ecology Resources, 20: 1432–1444. https://doi.org/10.1111/1755-0998.13220

Breusing, C., S.B. Johnson, V. Tunnicliffe, D.A. Clague, R.C. Vrijenhoek, and R.A. Beinart. 2020. Allopatric and sympatric drivers of speciation in alviniconcha hydrothermal vent snails. Molecular Biology and Evolution, 37(12): 3469–3484. https://doi.org/10.1093/molbev/msaa177

Burford, B.P., and B.H. Robison. 2020. Bioluminescent backlighting illuminates the complex visual signals of a social squid in the deep sea. Proceedings of the National Academy of Sciences of the United States of America, 117: 8524–8531. https://doi.org/10.1073/pnas.1920875117

Chai, F., K.S. Johnson, H. Claustre, X. Xing, Y. Wang, E. Boss, S. Riser, K. Fennel, O. Schofield, and A. Sutton. 2020. Monitoring ocean biogeochemistry with autonomous platforms. Nature Reviews Earth and Environment, 1: 315–326. https://doi.org/10.1038/s43017-020-0053-y

Clague, D.A., J.B. Paduan, D.W. Caress, J. McClain, and R.A. Zierenberg. 2020. Lava flows erupted in 1996 on North Gorda Ridge Segment and the geology of the nearby Sea Cliff Hydrothermal Vent Field From 1-M resolution AUV mapping. Frontiers in Marine Science, 7: 1–25. https://doi.org/10.3389/fmars.2020.00027

Clague, D.A., J.F. Martin, J.B. Paduan, D.A. Butterfield, J.W. Jamieson, M. Le Saout, D.W. Caress, H. Thomas, J.F. Holden, and D.S. Kelley. 2020. Hydrothermal chimney distribution on the Endeavour Segment, Juan de Fuca Ridge. Geochemistry Geophysics Geosystems, 21: 1–12. https://doi.org/10.1029/2020GC008917

Clare, M.A., M. Cartigny, P. Talling, K. Rosenberger, C. Paull, J. Hughes Clarke, R. Gwiazda, D. Parsons, J. Xu, R. Perera Silva Jacinto, and R. Apprioual. 2020. Lessons learned from monitoring of turbidity currents and guidance for future platform designs. Geological Society London, Special Publications, 500: 605–634. https://doi.org/10.1144/SP500-2019-173  

Connolly, T.P., P.R. McGill, R.G. Henthorn, D.A. Burrier, and C. Michaud. 2020. Near-bottom currents at Station M in the abyssal Northeast Pacific. Deep Sea Research Part II Topical Studies in Oceanography, 173: 1–12. https://doi.org/10.1016/j.dsr2.2020.104743

Cunha, M., L. Génio, F. Pradillon, M.C. Henry, S. Beaulieu, J. Birch, F. Campuzano, M. Carretón, F. De Leo, J. Gula, S. Laming, D. Lindsay, F. Matos, A. Metaxas, K. Meyer-Kaiser, S. Mills, H. Queiroga, C. Rodrigues, J. Sarrazin, H. Watanabe, R. Young, C. Young. 2020. Foresight Workshop on Advances in Ocean Biological Observations: a sustained system for deep-ocean meroplankton. Research Ideas and Outcomes, 6(e54284) https://doi.org/10.3897/rio.6.e54284

Cyronak, T., Y. Takeshita, T.A. Courtney, E.H. DeCarlo, B.D. Eyre, D.I. Kline, T. Martz, H. Page, N.N. Price, J. Smith, L. Stoltenberg, M. Tresguerres, and A.J. Andersson. 2020. Diel temperature and pH variability scale with depth across diverse coral reef habitats. Limnology and Oceanography Letters, 5(2): 193–203. https://doi.org/10.1002/lol2.10129

Danovaro, R., E. Fanelli, J. Aguzzi, D. Billett, L. Carugati, C. Corinaldesi, A. Dell'Anno, K. Gjerde, A.J. Jamieson, S. Kark, C. McClain, L. Levin, N. Levin, E. Ramirez-Llodra, H. Ruhl, C.R. Smith, P.V.R. Snelgrove, L. Thomsen, C.L. Van Dover, and M. Yasuhara. 2020. Ecological variables for developing a global deep-ocean monitoring and conservation strategy. Nature Ecology and Evolution, 4: 181–192. https://doi.org/10.1038/s41559-019-1091-z

Davis, A.L., K.N. Thomas, F.E. Goetz, B.H. Robison, S. Johnsen, and K.J. Osborn. 2020. Ultra-black camouflage in deep-sea fishes. Current Biology, 30: 3470–3476. https://doi.org/10.1016/j.cub.2020.06.044

Djurhuus, A., C.J. Closek, R.P. Kelly, K.J. Pitz, R.P. Michisaki, H.A. Starks, K.R. Walz, E.A. Andruszkiewicz, E. Olesin, K.A. Hubbard, E. Montes, D. Otis, F.E. Muller-Karger, F.P. Chavez, A.B. Boehm, and M. Breitbart. 2020. Environmental DNA reveals seasonal shifts and potential interactions in a marine community. Nature Communications, 11: 1–9. https://doi.org/10.1038/s41467-019-14105-1

Doo, S., A. Kealoha, A. Andersson, A. Choen, T.L. Hicks, Z.I. Johnson, M.H. Long, P. McElhany, N. Mollica, K.E. Shamberger, N.J. Silbiger, Y. Takeshita, and D.S. Busch. 2020. The challenges of detecting and attributing ocean acidification impacts on marine ecosystems. ICES Journal of Marine Science, 77(7-8): 2411–2422. https://doi.org/10.1093/icesjms/fsaa094

Drazen, J.C., C.R. Smith, K.M. Gjerde, S.H.D. Haddock, G.S. Carter, C.A. Choy, M.R. Clark, P. Dutrieux, E. Goetze, C. Hauton, M. Hatta, J.A. Koslow, A.B. Leitner, A. Pacini, J.N. Perelman, T. Peacock, T.T. Sutton, L. Watling, and H. Yamamoto. 2020. Midwater ecosystems must be considered when evaluating environmental risks of deep-sea mining. Proceedings of the National Academy of Sciences, 117(30): 17455–17460. https://doi.org/10.1073/pnas.2011914117

Elahi, R., L.P. Miller, and S.Y. Litvin. 2020. Historical comparisons of body size are sensitive to data availability and ecological context. The Ecological Society of America, 101: 1–10. https://doi.org/10.1002/ecy.3101

Fagundes, M., S.Y. Litvin, F. Micheli, G. De Leo, C.A. Boch, J.P Barry., S. Omidvar, and C.B. Woodson. 2020. Downscaling global ocean climate models improves estimates of exposure regimes in coastal environments. Scientific Reports, 10: 1–11. https://doi.org/10.1038/s41598-020-71169-6

Faktorová, D., R.E.R. Nisbet, J.A. Fernández Robledo, E. Casacuberta, L. Sudek, A.E. Allen, M. Ares, C. Aresté, C. Balestreri, A.C. Barbrook, P. Beardslee, S. Bender, D.S. Booth, F.Y. Bouget, C. Bowler, S.A. Breglia, C. Brownlee, G. Burger, H. Cerutti, R. Cesaroni, M.A. Chiurillo, T. Clemente, D.B. Coles, J.L. Collier, E.C. Cooney, K. Coyne, R. Docampo, C.L. Dupont, V. Edgcomb, E. Einarsson, P.A. Elustondo, F. Federici, V. Freire-Beneitez, N.J. Freyria, K. Fukuda, P.A. García, P.R. Girguis, F. Gomaa, S.G. Gornik, J. Guo, V. Hampl, Y. Hanawa, E.R. Haro-Contreras, E. Hehenberger, A. Highfield, Y. Hirakawa, A. Hopes, C.J. Howe, I. Hu, J. Ibañez, N.A.T. Irwin, Y. Ishii, N.E. Janowicz, A.C. Jones, A. Kachale, K. Fujimura-Kamada, B. Kaur, J.Z. Kaye, E. Kazana, P.J. Keeling, N. King, L.A. Klobutcher, N. Lander, I. Lassadi, Z. Li, S. Lin, J.C. Lozano, F. Luan, S. Maruyama, T. Matute, C. Miceli, J. Minagawa, M. Moosburner, S.R. Najle, D. Nanjappa, I.C. Nimmo, L. Noble, A.M.G. Novák Vanclová, M. Nowacki, I. Nuñez, A. Pain, A. Piersanti, S. Pucciarelli, J. Pyrih, J.S. Rest, M. Rius, D. Robertson, A. Ruaud, I. Ruiz-Trillo, M.A. Sigg, P.A. Silver, C.H. Slamovits, G. Jason Smith, B.N. Sprecher, R. Stern, E.C. Swart, A.D. Tsaousis, L. Tsypin, A. Turkewitz, J. Turnšek, M. Valach, V. Vergé, P. von Dassow, T. von der Haar, R.F. Waller, L. Wang, X. Wen, G. Wheeler, A. Woods, H. Zhang, T. Mock, A.Z. Worden, and J. Lukeš. 2020. Genetic tool development in marine protists: emerging model organisms for experimental cell biology. Nature Methods, 17: 481–494. https://doi.org/10.1038/s41592-020-0796-x

Fiechter, J., J. Santora, F.P. Chavez, D. Northcott, and M. Messié, 2020. Krill hotspot formation and phenology in the California Current Ecosystem. Geophysical Research Letters, 47(13): 1–10. https://doi.org/10.1029/2020GL088039  

Gallo, N.D., M. Beckwith, C.L. Wei, L.A. Levin, L. Kuhnz, and J.P. Barry. 2020. Dissolved oxygen and temperature best predict deep-sea fish community structure in the Gulf of California with climate change implications. Marine Ecology Progress Series, 637: 159–180. https://doi.org/10.3354/meps13240

Goffredi, S.K., E. Tilic, S.W. Mullin, K.S. Dawson, A. Keller, R.W. Lee, F. Wu, I. Levin, G.W. Rouse, E.E. Cordes, and V.J. Orphan. 2020. Methanotrophic bacterial symbionts fuel dense populations of deep-sea feather duster worms (Sabellida, Annelida) and extend the spatial influence of methane seepage. Science Advances, 6: 1–12. https://doi.org/10.1126/sciadv.aay8562

Goodheart, J., G. Minsky, M. Brynjegard-Bialik, M. Drummond, D.J. Munoz, T. Fallon, D.T. Schultz, J.K. Weng, E. Torres, and T. Oakley. 2020. Laboratory culture of the California sea firefly Vargula tsujii (Ostracoda: Cypridinidae): Developing a model system for the evolution of marine bioluminescence. Scientific Reports, 10: 1–15. https://doi.org/10.1038/s41598-020-67209-w

Guo, L., P. Xiu, F. Chai, and F. Chavez. 2020. Modeled Dynamics of Physical and Biological Processes in the Central California Current System From 1993 to 2016. Journal of Geophysical Research: Oceans, 125(5): e2019JC015664. https://doi.org/10.1029/2019JC015664

Haskell II , W.Z., A.J. Fassbender, J.S. Long, and J.N. Plant. 2020. Annual net community production of particulate and dissolved organic carbon from a decade of biogeochemical profiling float observations in the Northeast Pacific. Global Biogeochemical Cycles, 34: 1–22. https://doi.org/10.1029/2020GB006599

Haumann, F.A., R. Moorman, S.C. Riser, L.H. Smedsrud, T. Maksym, A.P.S. Wong, E.A. Wilson, R. Drucker, L.D. Talley, K.S. Johnson, R.M. Key, and J.L. Sarmiento. 2020. Supercooled Southern Ocean waters. Geophysical Research Letters, 47: 1–11. https://doi.org/10.1029/2020GL090242

Haver, S.M., Z. Rand, L.T. Hatch, D. Lipski, R.P. Dziak, J. Gedamke, J. Haxel, S.A. Heppell, J. Jahncke, M.F. McKenna, D.K. Mellinger, W.K. Oestreich, L. Roche, J. Ryan, and S.M. Van Parijs. 2020. Seasonal trends and primary contributors to the low-frequency soundscape of the Cordell Bank National Marine Sanctuary. The Journal of the Acoustical Society of America, 148: 845–858. https://doi.org/10.1121/10.0001726

Heerema, C.J., P.J. Talling, M.J. Cartigny, C.K. Paull, L. Bailey, S.M. Simmons, D.R. Parsons, M.A. Clare, R. Gwiazda, E. Lundsten, K. Anderson, K.L. Maier, J.P. Xu, E.J. Sumner, K.J. Rosenberger, J. Gales, M. McGann, L. Carter, and E. Pope. 2020. What determines the downstream evolution of turbidity currents?. Earth and Planetary Science Letters, 532: 1–11. https://doi.org/10.1016/j.epsl.2019.116023

Hirsh, H.K., K.J. Nickols, Y. Takeshita, S.B. Traiger, D.A. Mucciarone, S. Monismith, and R.B. Dunbar. 2020. Drivers of biogeochemical variability in a central California kelp forest: Implications for local amelioration of ocean acidification. JGR Oceans, 25: 1–22. https://doi.org/10.1029/2020JC016320

Hoque, M.M., K. Kawamura, T. Nagayama, B. Kunwar, E.T. Peltzer, and R.B.Gagosian. 2020. Molecular characteristics of water-soluble dicarboxylic acids, ω-oxocarboxylic acids, pyruvic acid and α-dicarbonyls in the aerosols from the eastern North Pacific. Marine Chemistry, 224(103812): 1–8. https://doi.org/10.1016/j.marchem.2020.103812

Hoving, H. J. T., P. Neitzel, S. Christiansen, R. Kiko, B.H. Robison, P. Silva, and A. Körtzinger. 2020. In situ observations show vertical community structure of pelagic fauna in the eastern tropical North Atlantic off Cape Verde. Scientific Reports, 10: 1–14. https://doi.org/10.1038/s41598-020-78255-9

Huffard, C.L., C.A. Durkin, S.E. Wilson, P.R. McGill, R. Henthorn, and K.L. Smith Jr. 2020. Temporally-resolved mechanisms of deep-ocean particle flux and impact on the seafloor carbon cycle in the northeast Pacific. Deep Sea Research Part II Topical Studies in Oceanography, 173: 1–17. https://doi.org/10.1016/j.dsr2.2020.104763

James, W.R., J.S. Lesser, S.Y. Litvin, and J.A. Nelson. 2020. Assessment of food web recovery following restoration using resource niche metrics. Science of the Total Environment, 711: 1–12. https://doi.org/10.1016/j.scitotenv.2019.134801

Kahn, A. S., C.W. Pennelly, P.R. McGill, and S.P. Leys. 2020. Behaviors of sessile benthic animals in the abyssal northeast Pacific Ocean. Deep Sea Research Part II Topical Studies in Oceanography, 173: 1–12. https://doi.org/10.1016/j.dsr2.2019.104729

Katija, K., G. TroniJ. Daniels, K. Lance, R.E. Sherlock, A.D. Sherman, and B.H. Robison. 2020. Revealing enigmatic mucus structures in the deep sea using DeepPIV. Nature, 583: 78–82. https://doi.org/10.1038/s41586-020-2345-2

Kuhnz, L.A., H.A. Ruhl, C.L. Huffard, and K.L. Smith. 2020. Benthic megafauna assemblage change over three decades in the abyss: Variations from species to functional groups. Deep Sea Research Part II Topical Studies in Oceanography, 173(104761). https://doi.org/10.1016/j.dsr2.2020.104761

Laguione-Marchais, C., B.J. Bett, G.L.J. Paterson, K.L. Smith Jr., and H.A. Ruhl. 2020. Using metabolic theory to assess structure and function in the deep-sea benthos, including microbial and metazoan dominance. Deep Sea Research Part II Topical Studies in Oceanography, 173: 1–10. https://doi.org/10.1016/j.dsr2.2020.104762

Lambert, G.G., H. Depernet, G. Gotthard, D.T. Schultz, I. Navizet,T. Lambert, S.R. Adams, A. Torreblanca-Zanca, M. Chu, D.S. Bindels, V. Levesque, J.N. Moffatt, A. Salih, A. Royant, and N.C. Shaner. 2020. Aequorea’s secrets revealed: New fluorescent proteins with unique properties for bioimaging and biosensing. PLOS Biology, 18(11):e3000936. https://doi.org/10.1371/journal.pbio.3000936

Le Saout, M., D.R. Bohnenstiehl, J.B. Paduan, and D.A. Clague. 2020. Quantification of eruption dynamics on the north rift at Axial Seamount, Juan de Fuca Ridge. Geochemistry, Geophysics, Geosystems, 21: 1–11. https://doi.org/10.1029/2020GC009136

Leonardi, N.D., E.V. Thuesen, and S.H.D. Haddock. 2020. A sticky thicket of glue cells: A comparative morphometric analysis of colloblasts in 20 species of comb jelly (phylum Ctenophora). Ciencias Marinas, 46: 211–225. https://doi.org/10.7773/cm.v46i4.3118

Locatelli, N.S., P.B. McIntyre, N.O. Therkildsen, and D.S. Baetscher. 2020. GenBank’s reliability is uncertain for biodiversity researchers seeking species-level assignment for eDNA. Proceedings of the National Academy of Sciences, 117: 32211–32212. https://doi.org/10.1073/pnas.2007421117

López-Garrido, P.H., J.P. Barry, J.I. González-Gordillo, and E. Escobar-Briones. 2020. ROV’s video recordings as a tool to estimate variation in megabenthic epifauna diversity and community composition in the Guaymas Basin. Frontiers in Marine Science, 7: 1–16. https://doi.org/10.3389/fmars.2020.00154

Low, N.H.N., C.A. Ng, and M. Fiorenza. 2020. A low‐cost modular control system for multistressor experiments. Limnology and Oceanography: Methods, 18: 623–634. https://doi.org/10.1002/lom3.10389

Maier, K. L., C.K. Paull, D.W. Caress, K. Anderson, N.M. Nieminski, E. Lundsten, B.E. Erwin, R. Gwiazda, and A. Fildani. 2020. Submarine-fan development revealed by integrated high-resolution datasets from La Jolla fan, offshore California, USA. Journal of Sedimentary Research, 90: 468–479. https://doi.org/10.2110/jsr.2020.22

Martini, S, D.T. Schultz, L. Lundsten, and S.H.D. Haddock. 2020. Bioluminescence in an undescribed species of carnivorous sponge (Cladorhizidae) from the deep sea. Science, 7: 1–19. https://doi.org/10.3389/fmars.2020.576476

Masmitjà , I., J. Navarro, S. Gomariz, J. Aguzzi, B. Kieft, T. O'Reilly, K. Katija, P.J. Bouvet, C. Fannjiang, M. Vigo, P. Puig, A. Alcocer, G. Vallicrosa, N. Palomeras, M. Carreras, J. del Rio, and J.B. Company. 2020. Mobile robotic platforms for the acoustic tracking of deep-sea demersal fishery resources. Science Robotics, 5(48): eabc3701. https://doi.org/10.1126/scirobotics.abc3701

Matsumoto, G.I., B. Bentlage, R. Sherlock, K. Walz, and B.H. Robison. 2020. “Little red jellies” in Monterey Bay, California (Cnidaria: Hydrozoa: Trachymedusae: Rhopalonematidae). Frontiers in Marine Science, 6: 1–14. https://doi.org/10.3389/fmars.2019.00798

Messié, M., A. Petrenko, A.M. Doglioli, C. Aldebert, E. Martinez, G. Koenig, S. Bonnet, and T. Moutin. 2020. The delayed island mass effect: How islands can remotely trigger blooms in the oligotrophic ocean. Geophysical Research Letters, 47: 1–10. https://doi.org/10.1029/2019GL085282

Miguez-Salas, O., C.L. Huffard, K.L. Smith Jr., P.R. McGill, and F.J. Rodriguez-Tovar. 2020. Faunal assemblage changes, bioturbation and benthic storms at an abyssal station in the northeastern Pacific. Deep Sea Research Part 1: Oceanographic Research Papers, 160(103277). https://doi.org/10.1016/j.dsr.2020.103277

Milligan, R.J., E.M. Scott, D.O.B. Jones, B.J. Bett, A.J. Jamieson, R. O’Brien, S. Pereira Costa, G.T. Rowe, H.A. Ruhl, K.L. Smith, Jr., P. de Susanne, M.F. Vardaro, and D.M. Bailey. 2020. Evidence for seasonal cycles in deep-sea fish abundances: A great migration in the deep SE Atlantic. Journal of Animal Ecology, 89(7): 1593–1603. https://doi.org/10.1111/1365-2656.13215  

Oestreich, W.K., J.A. Fahlbusch, D.E. Cade, J. Calambokidis, T. Margolina, J. Joseph, A.S. Friedlaender, M.F. McKenna, A.K. Stimpert, B.L. Southall, J.A. Goldbogen, and J.P. Ryan. 2020. Animal-borne metrics enable acoustic detection of blue whale migration. Current Biology, 30: 4773–4779.e3. https://doi.org/10.1016/j.cub.2020.08.105

Pitz, K.J., J. Guo, S.B. Johnson, T.L. Campbell, H. Zhang, R.C. Vrijenhoek, F.P. Chavez, and J. Geller. 2020. Zooplankton biogeographic boundaries in the California Current System as determined from metabarcoding. PloS ONE, 15(6): 1–20. https://doi.org/10.1371/journal.pone.0235159

Platz, M.C., Y. Takeshita, E. Bartels, and M.E. Arias. 2020. Evaluating the potential for autonomous measurements of net community production and calcification as a tool for monitoring coral restoration. Ecological Engineering, 158: 1–10. https://doi.org/10.1016/j.ecoleng.2020.106042

Reji, L., B.B. Tolar, F.P. Chavez, and C.A. Francis. 2020. Depth-differentiation and seasonality of planktonic microbial assemblages in the Monterey Bay upwelling system. Frontiers in Microbiology, 11: 1–14. https://dx.doi.org/10.3389%2Ffmicb.2020.01075

Robison, B.H., R.E. Sherlock, K.R. Reisenbichler, and P.R. McGill. 2020. Running the gauntlet: Assessing the threats to vertical migrators. Frontiers in Marine Science, 7: 1–10. https://doi.org/10.3389/fmars.2020.00064

Rodgers, K.B., S. Schlunegger, R.D. Slater, M. Ishii, T.L. Frölicher, K. Toyama, Y. Plancherel, O. Aumont, and A.J. Fassbender. 2020. Reemergence of anthropogenic carbon Into the ocean's mixed layer strongly amplifies transient climate sensitivity. Geophysical Research Letters, 47: 1–9. https://doi.org/10.1029/2020GL089275

Rodriguez-Martinez, R., G. Leonard, D.S. Milner, S. Sudek, M. Conway, K. Moore, T. Hudson, F. Mahe, P.J. Keeling, A.E. Santoro, A.Z. Worden, and T.A. Richards. 2020. Controlled sampling of ribosomally active protistan diversity in sediment-surface layers identifies putative players in the marine carbon sink. The ISME Journal, 14: 984–998. https://doi.org/10.1038/s41396-019-0581-y

Rueda, C.A., and J.P. Ryan. 2020. Humpback whale song analysis based on automatic classification performance. The Journal of the Acoustical Society of America, 148: 2597. https://doi.org/10.1121/1.5147215

Ruhl, H.A., F.L. Bahr, S.A. Henson, W.B. Hosking, B. Espinola, M. Kahru, P. Daniel, P. Drake, and C.A. Edwards. 2020. Understanding the remote influences of ocean weather on the episodic pulses of particulate organic carbon flux. Deep Sea Research Part II Topical Studies in Oceanography, 173: 1–11. https://doi.org/10.1016/j.dsr2.2020.104741

Satterthwaite, E.V., S.G. Morgan, J.P. Ryan, J.B.J. Harvey, and R.C. Vrijenhoek. 2020. Seasonal and synoptic oceanographic changes influence the larval biodiversity of a retentive upwelling shadow. Progress in Oceanography, 182: 1–15. https://doi.org/10.1016/j.pocean.2019.102261

Schultz, D.T., J.M. Eizenga, R.B. Corbett-Detig, W.R. Francis, L.M. Christianson, and S.H.D. Haddock. 2020. Conserved novel ORFs in the mitochondrial genome of the ctenophore Beroe forskalii. PeerJ, 8: e8356. https://doi.org/10.7717/peerj.8356

Schwarz, R., U. Piatkowski, B.H. Robison, V.V. Laptikhovsky, and H.J. Hoving. 2020. Life history traits of the deep-sea pelagic cephalopods Japetella diaphana and Vampyroteuthis infernalis. Deep Sea Research Part 1: Oceanographic Research Papers, 164: 1–14. https://doi.org/10.1016/j.dsr.2020.103365

Sepulveda, A.J., J.M. Birch, E.P. Barnhart, C.M. Merkes, K.M. Yamahara, R. Marin III, S.M. Kinsey, P.R. Wright, and C. Schmid. 2020. Robotic environmental DNA bio-surveillance of freshwater health. Scientific Reports, 10: 1–8. https://doi.org/10.1038/s41598-020-71304-3

Shaw, T.J., C. Boucher, C.L. Huffard, and K.L. Smith Jr. 2020. Model study of organic carbon attenuation and oxygen mass transfer in persistent aggregate layers in the deep sea. Deep Sea Research Part II Topical Studies in Oceanography, 173: 1–8. https://doi.org/10.1016/j.dsr2.2020.104760

Smith Jr., K.L., C.L. Huffard, and H.A. Ruhl. 2020. Thirty-year time series study at a station in the abyssal NE Pacific: An introduction. Deep Sea Research Part II Topical Studies in Oceanography, 173: 1–4. https://doi.org/10.1016/j.dsr2.2020.104764

Takeshita, Y., K.S. Johnson, L.J. Colletti, H. Jannasch, P.M. Walz, and J.K. Warren. 2020. Assessment of pH dependent errors in spectrophotometric pH measurements of seawater. Marine Chemistry, 223(103801): 1–7. https://doi.org/10.1016/j.marchem.2020.103801

Tolar, B.B., L. Reji, J.M. Smith, M. Blum, J.T. Pennington, F.P. Chavez, and C.A. Francis. 2020. Time series assessment of Thaumarchaeota ecotypes in Monterey Bay reveals the importance of water column position in predicting distribution–environment relationships. Limnology and Oceanography, 65: 2041–2055. https://doi.org/10.1002/lno.11436

Wang, Z., J. Xu, P.J. Talling, M.J.B. Cartigny, S.M. Simmons, R. Gwiazda, C.K. Paull, K.L. Maier, and D.R. Parsons. 2020. Direct evidence of a high-concentration basal layer in a submarine turbidity current, Deep-Sea Research Part 1: Oceanographic Research Papers, 123(103300): 1–18. https://doi/10.1016/j.dsr.2020.103300

Wei-Jun, C., X. Yuan-Yuan, R.A. Feely, R. Wanninkhof, B. Jönsson, S.R. Alin, L. Barbero, J.N. Cross, K. Azetsu-Scott, A.J. Fassbender, B.R. Carter, L.Q. Jiang, P. Pepin, B. Chen, N. Hussain, J.J. Reimer, L. Xue, J.E. Salisbury, J.M. Hernández-Ayón, C. Langdon, Q. Li, A.J. Sutton, C.T.A. Chen, and D.K. Gledhill. 2020. Controls on surface water carbonate chemistry along North American ocean margins. Nature Communications, 11: 1–13. https://doi.org/10.1038/s41467-020-16530-z

Wheat, C. G., R.A. Zierenberg, J.B. Paduan, D.W. Caress, D.A. Clague, and W.W. Chadwick Jr. 2020. Changing brine inputs into hydrothermal fluids: Southern Cleft Segment, Juan de Fuca Ridge. Geochemistry Geophysics Geosystems, 21: 1–18. https://doi.org/10.1029/2020GC009360

2019

Aguzzi, J., D. Chatzievangelou, S. Marini, E. Fanelli, R. Danovaro, S. Flögel, N. Lebris, F. Juanes, F.C. De Leo, J. Del Rio, L. Thomsen, C. Costa, G. Riccobene, C. Tamburini, D. Lefevre, C. Gojak, P.M. Poulain, P. Favali, A. Griffa, A. Purser, D. Cline, D. Edgington, J. Navarro, S. Stefanni, S.L. D'Hondt, I.G. Priede, R. Rountree, and J.B. Company. 2019. New High-Tech Flexible Networks for the Monitoring of Deep-Sea Ecosystems. Environmental Science & Technology, 53: 6616–6631. https://doi.org/10.1021/acs.est.9b00409

Ardron, J.A., E. Simon-Lledó, D.O.B. Jones, and H.A. Ruhl. 2019. Detecting the effects of deep-seabed nodule mining: Simulations using megafaunal data from the Clarion-Clipperton Zone. Frontiers in Marine Science, 6: 1–13. https://doi.org/10.3389/fmars.2019.00604

Arranz, P., K.J. Benoit-Bird, A.S. Friedlander, E.L. Hazen, J.A. Goldbogen, A.K. Stimpert, S.L. DeRuiter, J. Calambokidis, B.L. Southall, A. Fahlman, and P.L. Tyack. 2019. Diving behavior and fine-scale kinematics of free-ranging Risso’s dolphins foraging in shallow and deep-water habitats. Frontiers in Ecology and Evolution, 7: 1–15. https://doi.org/10.3389/fevo.2019.00053

Barton, M.B., S.Y. Litvin, J.J. Vollenweider, R.A. Heintz, B.L. Norcross, and K.M. Boswell. 2019. Experimental determination of tissue turnover rates and trophic discrimination factors for stable carbon and nitrogen isotopes of Arctic Sculpin (Myoxocephalus scorpioides): A common Arctic nearshore fish. Journal of Experimental Marine Biology and Ecology, 511: 60–67. https://doi.org/10.1016/j.jembe.2018.11.005