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Displaying 201-300 of 2,835 Publications

2021

De Orte, R. D.A. Koweek, T. Cyronak, Y. Takeshita, A. Griffin, K. Wolfe, A. Szmant, R. Whitehead, R. Albright, and K. Caldeira. 2021. Unexpected role of communities colonizing dead coral substrate in the calcification of coral reefs. Limnology and Oceanography, 66(5): 1793–1803. https://doi.org/10.1002/lno.11722

Durden, J.M., B. Hosking, B.J. Bett, D. Cline, and H.A. Ruhl. 2021. Automated classification of fauna in seabed photographs: The impact of training and validation dataset size, with considerations for the class imbalance. Progress in Oceanography, 196: 1–11. https://doi.org/10.1016/j.pocean.2021.102612

Durkin, C.A., K.O. Buesseler, I. Cetinic, M. Estapa, R.P. Kelley, and M. Omand. 2021. A visual tour of carbon export by sinking particles. Global Biogeochemical Cycles, 35(10): 1–17. https://doi.org/10.1029/2021GB006985

Elor, A., T. Thang, B.P. Hughes, A. Crosby, A. Phung, E. Gonzalez, K. Katija, S.H.D. Haddock, B.E. Erwin, E.J. Martin, and L. Takayama. 2021. Catching jellies in immersive virtual reality: A comparative teleoperation study of ROVs in underwater capture tasks. Proceedings of the 27th ACM Symposium on Virtual Reality Software and Technology, VRST '21 (17): 1–10. https://doi.org/10.1145/3489849.3489861

Fildani, A., S. Kostic, J.A. Covault, K.L. Maier, D.W. Caress, and C.K. Paull. 2021. Exploring a new breadth of cyclic steps on distal submarine fans. Sedimentology, 68: 1378–1399. https://doi.org/10.1111/sed.12803

Flohrab, A., A. Schaapb, E.P. Achterberg, G. Alendal, M. Arundell, C. Berndt, J. Blackford, C. Bottner, S.M. Borisov, R. Brown, J.M. Bull, L. Carter, B. Cheng, A.W. Dale, D. de Beer, M. Dean, C. Deusner, M. Deware, J.M. Durden, S. Elsen, M. Esposito, M. Faggetter, J.P. Fischer, A. Gana, J. Gros, M. Haeckel, R. Hanz, M. Holtappels, B. Hosking, V.A.I. Huvenne, R.H. James, D. Koopmans, E. Kossel, T.G. Leighton, J. Li, A. Lichtschlag, P. Linke, S. Loucaides, M. Martínez-Cabanas, J.M. Matter, T. Mesher, S. Monk, M. Mowlem, A. Oleynik, S. Papadimitriou, D. Paxton, C.R. Pearce, K. Peel, B. Roche, H.A. Ruhl, U. Saleem, C. Sands, K. Saw, M. Schmidt, S. Sommer, J.A. Strong, J. Triest, B. Ungerbock, J. Walk, P. White, S. Widdicombe, R.E. Wilson, H. Wright, J. Wyatt, and D. Connelly. 2021. Towards improved monitoring of offshore carbon storage: A real-world field experiment detecting a controlled sub-seafloor CO2 release. International Journal of Greenhouse Gas Control, 106: 1–20. https://doi.org/10.1016/j.ijggc.2020.103237

Garwood, J.C., A.J. Lucas, P. Naughton, P.L.D. Roberts, J.S. Jaffe, L. deGelleke, and P.J.S. Franks. 2021. Larval cross-shore transport estimated from internal waves with a background flow: The effects of larval vertical position and depth regulation. Limnology and Oceanography, 66: 678–693. https://doi.org/10.1002/lno.11632

Hamilton, M., M. Mascioni, E. Hehenberger, C. Bachy, C. Yung, M. Vernet, and A.Z. Worden. 2021. Spatiotemporal variations in Antarctic protistan communities highlight phytoplankton diversity and seasonal dominance by a novel cryptophyte lineage. American Society for Microbiology, 12: 1–23. https://doi.org/10.1128/mBio.02973-21

Hansell, D.A., C.A. Carlson, R.M.W. Amon, X.A. Alvarez-Salgado, Y. Yamashita, C. Romera-Castillo, and M.B. Bif. 2021. Compilation of dissolved organic matter (DOM) data obtained from the global ocean surveys from 1994 to 2020 (NCEI Accession 0227166). NOAA National Centers for Environmental Information, Dataset: Version 2. https://dx.doi.org/10.25921/s4f4-ye35

Helm, R.R., N. Clark, H. Harden-Davies, D. Amon, P. Girguis, C. Bordehore, S. Earle, M.J. Gibbons, Y. Golbuu, S.H.D. Haddock, J.D.R. Houghton, J. Javidpour, D.J. McCauley, L. Morgan, D. Obura, E.A. Pakhomov, K.A. Pitt, J. Jimenez Ramon, R. Sumaila, and J.B. Thiebot. 2021. Protect high seas biodiversity. Science, 372: 1048–1049. https://doi.org/10.1126/science.abj0581

Hoover, A.P., J. Daniels, J.C. Nawroth, and K. Katija. 2021. A computational model for tail undulation and fluid transport in the giant larvacean. Fluids, 6: 88–105. http://dx.doi.org/10.3390/fluids6020088

Kang, S.E., Y.K. Jin, U. Jang, M.J. Duchesne, C. Shin, S. Kim, M. Riedel, S.R. Dallimore, C.K. Paull, Y. Choi, and J.K. Hong. 2021. Imaging the P-wave velocity structure of Arctic subsea permafrost using Laplace-domain full-waveform inversion. JGR Earth Surface, 126: 1–15. https://doi.org/10.1029/2020JF005941

Katija, K., B. Schlining, L. Lundsten, K. Barnard, G. Sainz, O. Boulais, B. Woodward, and K.L. Croff Bell. 2021. FathomNet: An open, underwater image repository for automated detection and classification of midwater and benthic animals. Marine Technology Society Journal, 55(3): 136–137. https://doi.org/10.4031/mtsj.55.3.20

Katija, K., E. Orenstein, B. Schlining, L. Lundsten, K. Barnard, G. Sainz, O. Boulais, B. Woodward, and K.C. Bell. 2021. FathomNet: A global underwater image training set for enabling artificial intelligence in the ocean. arXiv: 2109.14646. https://doi.org/10.48550/arXiv.2109.14646

Kavanaugh, M. T., T. Bell, D. Catlett, M.A. Cimino, S.C. Doney, W. Klajbor, M. Messié, E. Montes, F.E. Muller-Karger, D. Otis, J.A. Santora, I.D. Schroeder, J. Triñanes, and D.A. Siegel. 2021. Satellite remote sensing and the Marine Biodiversity Observation Network (MBON): Current science and future steps. Oceanography, 34: 62–79. https://doi.org/10.5670/oceanog.2021.215

Krumpel, A., A. Rice, K.E. Frasier, F. Reese, J.S. Trickey, A.E. Simonis, J.P. Ryan, S.M. Wiggins, A. Denzinger, H.U. Schnitzler, and S. Baumann-Pickering. 2021. Long-term patterns of noise from underwater explosions and their relation to fisheries in Southern California. Frontiers in Marine Science, 8: 1–21. https://doi.org/10.3389/fmars.2021.796849

Kudela, R.M., C. Anderson, and H. Ruhl. 2021. The California Harmful Algal Bloom Monitoring and Alert Program: A success story for coordinated ocean observing. Frontiers in Ocean Observing: Documenting Ecosystems, Understanding Environmental Changes, Forecasting Hazards, 34: 84–85. https://doi.org/10.5670/oceanog.2021.supplement.02-30

LaDouceur, E.B.E., L.A. Kuhnz, C. Biggs, A. Bitondo, M. Olhasso, K.L. Scott, and M. Murray. 2021. Histologic examination of a sea pig (Scotoplanes sp.) using bright field light microscopy. Journal of Marine Science and Engineering, 9: 1–9. https://doi.org/10.3390/jmse9080848

Lamy, T., K.J. Pitz, F.P. Chavez, C.E. York, and R.J. Miller. 2021. Environmental DNA reveals the fine-grained and hierarchical spatial structure of kelp forest fish communities. Scientific Reports, 11: 1–13. https://doi.org/10.1038/s41598-021-93859-5

Langan, J.A., G. Puggioni, C.A. Oviatt, M.E. Henderson, and J.S. Collie. 2021. Climate alters the migration phenology of coastal marine species. Marine Ecology Progress Series, 660: 1–18. https://doi.org/10.3354/meps13612

Lee, D.H., J.H. Kim, Y.M. Lee, J.H. Kim, Y.K. Jin, C. Paull, J.S. Ryu, and K.H. Shin. 2021. Geochemical and microbial signatures of siboglinid tubeworm habitats at an active mud volcano in the Canadian Beaufort Sea. Frontiers in Marine Science, 8: 1–16. https://doi.org/10.3389/fmars.2021.656171

Leitner, A.B., J.M. Durden, C.R. Smith, E.D. Klingberg, and J.C. Drazen. 2021. Synaphobranchid eel swarms on abyssal seamounts: Largest aggregation of fishes ever observed at abyssal depths. Deep Sea Research Part 1: Oceanographic Research Papers, 167: 1–11. https://doi.org/10.1016/j.dsr.2020.103423

Leitner, A.B., T. Friedrich, C.D. Kelley, S. Travis, D. Partridge, B. Powell, and J.C. Drazen. 2021. Biogeophysical influence of large-scale bathymetric habitat types on mesophotic and upper bathyal demersal fish assemblages: a Hawaiian case study. Marine Ecology Progress Series, 659: 219–236. https://doi.org/10.3354/meps13581

Lertvilai, P., P.L.D. Roberts, and J.S. Jaffe. 2021. In situ underwater average flow velocity estimation using a low-cost video velocimeter. Journal of Atmospheric and Oceanic Technology, 38: 1143–1156. https://doi.org/10.1175/JTECH-D-20-0115.1

Long, J.S., A.J. Fassbender, and M.L. Estapa. 2021. Depth-resolved net primary production in the Northeast Pacific Ocean: A comparison of satellite and profiling float estimates in the context of two marine heatwaves. Geophysical Research Letters, 48(19): 1–11. https://doi.org/10.1029/2021GL093462

Maurer, T.L., J.N. Plant, and K.S. Johnson. 2021. Delayed-mode quality control of oxygen, nitrate, and pH data on SOCCOM biogeochemical profiling floats. Frontiers in Marine Science, 8: 1–20. https://doi.org/10.3389/fmars.2021.683207

McMahon, C.R., F. Roquet, S. Baudel, M. Belbeoch, S. Bestley, C. Blight, L. Boehme, F. Carse, D.P. Costa, M.A. Fedak, C. Guinet, R. Harcourt, E. Heslop, M.A. Hindell, X. Hoenner, K. Holland, M. Holland, F.R.A. Jaine, T. Jeanniard du Dot, I. Jonsen, T.R. Keates, K.M. Kovacs, S. Labrousse, P. Lovell, C. Lydersen, D. March, M. Mazloff, M.K. McKinzie, M.M.C. Muelbert, K. O’Brien, L. Phillips, E. Portela, J. Pye, S. Rintoul, K. Sato, A.M.M. Sequeira, S.E. Simmons, V.M. Tsontos, V. Turpin, E. Van Wijk, D. Vo, M. Wege, F.G. Whoriskey, K. Wilson, and B. Woodward. 2021. Animal borne ocean sensors – AniBOS – an essential component of the Global Ocean Observing System. Frontiers in Marine Science, 8: 1–21. https://doi.org/10.3389/fmars.2021.751840

Meech, M.E., C.E. Mills, S.H.D. Haddock, and R.W. Meech. 2021. Two swimming modes in Trachymedusae; bell kinematics and the role of giant axons. Journal of Experimental Biology, 224: 1–12. https://doi.org/10.1242/jeb.239830

Merza, E., T. Kozakiewicz, M. Reyes, C. Ebi, P. Isles, M. Baity-Jesi, P. Roberts, J.S. Jaffe, S.R. Dennis, T. Hardeman, N. Stevens, T. Lorimer, and F. Pomatia. 2021. Underwater dual-magnification imaging for automated lake plankton monitoring. Water Research, 203: 1–12. https://doi.org/10.1016/j.watres.2021.117524

Micallef, A., C.K. Paull, N. Saadatkhah, and O. Bialik. 2021. The role of fluid seepage in the erosion of Mesozoic carbonate escarpments. JGR Earth Surface, 126: 1–25. https://doi.org/10.1029/2021JF006387

Miller, S.D., S.H.D. Haddock, W.C. Straka III, C.J. Seaman, C.L. Combs, M. Wang, W. Shi, and S. Nam. 2021. Honing in on bioluminescent milky seas from space. Scientific Reports, 11: 1–10. https://doi.org/10.1038/s41598-021-94823-z

Montseny, M., C. Linares, M. Carreiro-Silva, L.A. Henry, D. Billett, E.E. Cordes, C.J. Smith, N. Papadopoulou, M. Bilan, F. Girard, H.L. Burdett, A. Larsson, S. Strömberg, N. Viladrich, J.P. Barry, P. Baena, A. Godinho, J. Grinyó, A. Santín, T. Morato, A.K. Sweetman, J.M. Gili, and A. Gori. 2021. Active ecological restoration of cold-water corals: techniques, challenges, costs, and future directions. Frontiers in Marine Science, 8: 1–21. https://doi.org/10.3389/fmars.2021.621151

Moore, S.K, J.B. Mickett, G.J. Doucette, N.G. Adams, C.M. Mikulski, J.M. Birch, B. Roman, N. Michel-Hart, J.A.. 2021. An Autonomous Platform for Near Real-Time Surveillance of Harmful Algae and Their Toxins in Dynamic Coastal Shelf Environments. Journal of Marine Science and Engineering, 9(3): 336. https://doi.org/10.3390/jmse9030336

Negrete-Aranda, R., F. Neumann, J. Contreras, R.N. Harris, R.M. Spelz, R. Zierenberg, and D.W. Caress. 2021. Transport of heat by hydrothermal circulation in a young rift setting: Observations from the Auka and JaichMaa Ja'ag' vent field in the Pescadero Basin, southern Gulf of California. Journal of Geophysical Research: Solid Earth, 126(8): 1–20. https://doi.org/10.1029/2021JB022300  

Paduan, J., D. Clague, D. Caress, M. Le Saout, and B. Dreyer. 2021. Systematic variations in lava flow morphology along the north and south rift zones of Axial Seamount. AGU Meeting, Fall 2020: 1–20. https://doi.org/10.1002/essoar.10505810.1

Pagniello, C.M.L.S., J. Butler, A. Rosen, A. Sherwood, P.L.D. Roberts, P.E. Parnell, J.S. Jaffe, and A. Širović. 2021. An optical imaging system for capturing images in low-light aquatic habitats using only ambient light. Oceanography, 34(3): 71–77. https://www.jstor.org/stable/27051392

Paull, C.K., S.R. Dallimore, D.W. Caress, R. Gwiazda, E. Lundsten, K. Anderson, H. Melling, Y.K. Jin, M.J. Duchesne, S.G. Kang, S. Kim, M. Riedel, E.L. King, and T. Lorenson. 2021. A 100-km wide slump along the upper slope of the Canadian Arctic was likely preconditioned for failure by brackish pore water flushing. Marine Geology, 435: 1–16. https://doi.org/10.1016/j.margeo.2021.106453

Portner, A., B.M. Dreyer, and D.A. Clague. 2021. Mid-ocean-ridge rhyolite (MORR) eruptions on the East Pacific Rise lack the fizz to pop. Geology, 49(4): 377–381. https://doi.org/10.1130/G47820.1

Puente-Tapia, F.A., R. Gasca, A. Schiariti, and S.H.D. Haddock. 2021. An updated checklist of ctenophores (Ctenophora: Nuda and Tentaculata) of Mexican seas. Regional Studies in Marine Science, 41: 1–20. https://doi.org/10.1016/j.rsma.2020.101555

Ramirez, V., L. Angel, S. Madero, R. Michael, J. Contreras Perez, D. Caress, D. Clague, and J.B. Paduan. 2021. A new method for fault-scarp detection using linear discriminant analysis (LDA) in high-resolution bathymetry data From the Alarcón Rise and Pescadero Basin, Gulf of California. EGU General Assembly Conference Abstracts, 23rd EGU General Assembly: EGU21–417. https://ui.adsabs.harvard.edu/abs/2021EGUGA..23..417V/abstract

Ricart, M., M. Ward, T.M. Hill, E. Sanford, K.J. Kroeker, Y. Takeshita, S. Merolla, P. Shukla, A.T. Ninokawa, K. Elsmore, and B. Gaylord. 2021. Coast‐wide evidence of low pH amelioration by seagrass ecosystems. Global Change Biology 27(11): 2580–2591. https://doi.org/10.1111/gcb.15594

Roemmich, D., L. Talley, N. Zilberman, E. Osborne, K.S. Johnson, L. Barbero, H.C. Bittig, N. Briggs, A.J. Fassbender, G.C. Johnson, B.A. King, E. McDonagh, S. Purkey, S. Riser, T. Suga, Y. Takeshita, V. Thierry, and S. Wijffels. 2021. The Technological, Scientific, and Sociological Revolution of Global Subsurface Ocean Observing. Oceanography, 34: 2–8. https://doi.org/10.5670/oceanog.2021.supplement.02-02

Ruhl, H.A., J.A. Brown, A.R. Harper, E.L. Hazen, L. deWitt, P. Daniel, A. DeVogelaere, R.M. Kudela, J.P. Ryan, A.D. Fischer, F.E. Muller-Karger, and F.P. Chavez. 2021. Integrating biodiversity and environmental observations in support of national marine sanctuary and large marine ecosystem assessments. Oceanography, 34: 145–155. https://doi.org/10.5670/oceanog.2021.221

Ryan, J.P., J.E. Joseph, T. Margolina, L.T. Hatch, A. Azzara, A. Reyes, B.L. Southall, A. DeVogelaera, L.E. Peavey Reeves, Y. Zhang, D.E. Cline, B. Jones, P. McGill, S. Baumann-Pickering, and A.K. Stimpert. 2021. Reduction of low-frequency vessel noise in Monterey Bay National Marine Sanctuary during the COVID-19 pandemic. Frontiers in Marine Science, 8: 1–13. https://doi.org/10.3389/fmars.2021.656566

Salcedo, D.L., L.A. Soto, and J.B. Paduan. 2021. Trophic interactions among the macrofauna of the deep-sea hydrothermal vents of Alarcón Rise, Southern Gulf of California. Deep Research Part 1: Oceanographic Research Papers, 176(10609). https://doi.org/10.1016/j.dsr.2021.103609

Samuel, R.M., R. Meyer, P.L. Buttigieg, N. Davies, N.W. Jeffery, C. Meyer, C. Pavloudi, K.J. Pitz, M. Sweetlove, S. Theroux, J. van de Kamp, and A. Watts. 2021. Toward a global public repository of community protocols to encourage best practices in biomolecular ocean observing and research. Frontiers in Marine Science, 8: 1–8. https://doi.org/10.3389/fmars.2021.758694

Santora, J.A., I.D. Schroeder, S.J. Bograd, F.P. Chavez, M.A. Cimino, J. Fiechter, E.L. Hazen, M.T. Kavanaugh, M. Messié, R.R. Miller, K.M. Sakuma, W.J. Sydeman, B.K. Wells, and J.C. Field. 2021. Pelagic biodiversity, ecosystem function, and services: An integrated observing and modeling approach. Oceanography, 34: 16–37. https://doi.org/10.5670/oceanog.2021.212

Satterthwaite, E.V., J.P. Ryan, J.B.J. Harvey, and S.G. Morgan. 2021. Invertebrate larval distributions influenced by adult habitat distribution, larval behavior, and hydrodynamics in the retentive upwelling shadow of Monterey Bay, California, USA. Marine Ecology Progress Series, 661: 35–47. https://doi.org/10.3354/meps13602

Schultz, D.T., W.R. Francis, J.D. McBroome, L.M. Christianson, S.H.D. Haddock, and R.E. Green. 2021. A chromosome-scale genome assembly and karyotype of the ctenophore Hormiphora californensis. G3 Genes|Genomes|Genetics, 11(11): 1–12. https://doi.org/10.1093/g3journal/jkab302

Sepulveda, A. J., A. Hoegh, J. A. Gage, S. L. Caldwell Eldridge, J. M. Birch, C. Stratton, P. R. Hutchins, and E. P. Barnhart. 2021. Integrating Environmental DNA Results With Diverse Data Sets to Improve Biosurveillance of River Health. Frontiers in Ecology and Evolution, 9(620715). https://doi.org/10.3389/fevo.2021.620715

Sequeira, A.M.M., M. O' Toole, T.R. Keates, L.H. McDonnell, C.D. Braun, X. Hoenner, F.R.A. Jaine, I.D. Jonsen, P. Newman, J. Pye, S.J. Bograd, G.C. Hays, E.L. Hazen, M. Holland, V.M. Tsontos, C. Blight, F. Cagnacci, S.C. Davidson, H. Dettki, C.M. Duarte, D.C. Dunn, V.M. Equiluz, M. Fedak, A.C. Gleiss, N. Hammerschlag, M.A. Hindell, K. Holland, I. Janekovic, M.K. McKinzie, M.M.C. Muelbert, C. Pattiaratchi, C. Rutz, D.W. Sims, S.E. Simmons, B. Townsend, F. Whoriskey, B. Woodward, D.P. Costa, M.R. Heupel, C.R. McMahon, R. Harcourt, and M. Weise. 2021. 2021. Methods in Ecology and Evolution, 12: 996–1007. https://doi.org/10.1111/2041-210X.13593

Damian-Serrano, A., S.H.D. Haddock, and C.W. Dunn. 2021. The evolutionary history of siphonophore tentilla: Novelties, convergence, and integration. Integrative Organismal Biology, 3: 1–21. https://doi.org/10.1093/iob/obab019

Shen, Y., T.P. Guilderson, O.A. Sherwood, C.G. Castro, F.P. Chavez, and M.D. McCarthy. 2021. Amino acid δ13C and δ15N patterns from sediment trap time series and deep-sea corals: Implications for biogeochemical and ecological reconstructions in paleoarchives. Geochimica et Cosmochimica Acta, 297: 288–307. https://doi.org/10.1016/j.gca.2020.12.012

Smith, Jr., K.L., A.D. Sherman, P.R. McGill, R.G. Henthorn, J. Ferreira, T.P. Connolly, and C.L. Huffard. 2021. Abyssal Benthic Rover, an autonomous vehicle for long-term monitoring of deep-ocean processes. Science Robotics, 6(60): eabl4925. https://doi.org/10.1126/scirobotics.abl4925

Stefanoudis, P. V., L.M. Biancani, S. Cambronero-Solano, M.R. Clark, J.T. Copley, E. Easton, F. Elmer, S.H.D. Haddock, S. Herrera, I.S. Iglesias, A.M. Quattrini, J. Sigwart, C. Yesson, and A.G. Glover. 2021. Moving conferences online: lessons learned from an international virtual meeting. Proceedings of the Royal Society B, 288: 1–7. https://doi.org/10.1098/rspb.2021.1769

Takeshita, Y., B.D. Jones, K.S. Johnson, F.P. Chavez, D.L. Rudnick, M. Blum, K. Conner, S. Jensen, J.S. Long, T. Maughan, K.L. Mertz, J.T. Sherman, and J.K. Warren. 2021. Accurate pH and O2 measurements from Spray underwater gliders. Journal of Atmospheric and Oceanic Technology, 38: 181–195. https://doi.org/10.1175/JTECH-D-20-0095.1

Takeshita, Y., J.K. Warren, X. Liu, R.S. Spaulding, R.H. Byrne, B.R. Carter, M.D. DeGrandpre, A. Murata, and S. Watanabe. 2021. Consistency and stability of purified meta-cresol purple for spectrophotometric pH measurements in seawater. Marine Chemistry, 236: 1–10. https://doi.org/10.1016/j.marchem.2021.104018

Vega-Ramirez, L.A., R.M. Spelz-Madero, R. Negrete-Aranda, F. Neumann, D.W. Caress, D.A. Clague, J.B. Paduan, J. Contreras, and J.G. Peña-Dominguez. 2021. A new method for fault-scarp detection using linear discriminant analysis in high-resolution bathymetry data from the Alarcon Rise and Pescadero Basin. Tectonics, 40(12): 1–18. https://doi.org/10.1029/2021TC006925

Walton, M.A.L., C.K. Paull, G. Cochrane, J. Addison, D. Caress, R. Gwiazda, D. Kennedy, E. Lundsten, and A. Papesh. California Deepwater Investigations and Groundtruthing (Cal DIG) I: Fault and Shallow Geohazard Analysis Offshore Morro Bay, Volume 2. Camarillo, CA: US Department of the Interior, Bureau of Ocean Energy Management, 2021. https://espis.boem.gov/final%20reports/BOEM_2021-044.pdf   

Winnikoff, J.R., S.H.D. Haddock, and I. Budin. 2021. Depth- and temperature-specific fatty acid adaptations in ctenophores from extreme habitats. Journal of Experimental Biology, 224: 1–10. https://doi.org/10.1242/jeb.242800

Wolfe, W.H., K.M. Shipley, P.J. Bresnahan, Y. Takeshita, T. Wirth, and T.R. Martz. 2021. Technical note: Stability of tris pH buffer in artificial seawater stored in bags. Ocean Science, 17: 819–831. https://doi.org/10.5194/os-17-819-2021

Yoerger, D.R., A.F. Govindarajan, J.C. Howland, J.K. Llopiz, P.H. Wiebe, M. Curran, J. Fujii, D. Gomez-Ibanez, K. Katija, B.H. Robison, B.W. Hobson, M. Risi, and S.M. Rock. 2021. Mesobot: A hybrid underwater robot for multidisciplinary investigation of the ocean twilight zone. Science Robotics, 6(55): 1–22. https://doi.org/10.1126/scirobotics.abe1901

Yoerger, D.R., A.F. Govindarajan, J.C. Howland, P.H. Wiebe, M. Curran, J. Fujii, D. Gomez-Ibanez, K. Katija, B.H. Robison, B.W. Hobson, M. Risi, and S.M. Rock. 2021. A hybrid underwater robot for multidisciplinary investigation of the ocean twilight zone. Science Robotics, 6(55): eabe1901. https://doi.org/10.1126/scirobotics.abe1901

Zhang, Y., B. Kieft, B.W. Hobson, B.Y. Raanan, S. Urmy, K.J. Pitz, C.M. Preston, B. Roman, K.J. Benoit-Bird, J.M. Birch, F.P. Chavez, and C.A. Scholin. 2021. Persistent sampling of vertically migrating biological layers by an autonomous underwater vehicle within the beam of a seabed-mounted echosounder. IEEE Journal of Oceanic Engineering, 46: 497–508. https://doi.org/10.1109/JOE.2020.2982811

Zhang, Y., J.P. Ryan, B.W. Hobson, B. Kieft, A. Romano, B. Barone, C.M. Preston, B. Roman, B.Y. Raanan, D. Pargett, M. Dugenne, A.E. White, F. Henderikx Freitas, S. Poulos, S.T. Wilson, E.F. DeLong, D.M. Karl, J.M. Birch, J.G. Bellingham, and C.A. Scholin. 2021. A system of coordinated autonomous robots for Lagrangian studies of microbes in the oceanic deep chlorophyll maximum. Science Robotics, 6: 1–11. https://doi.org/10.1126/scirobotics.abb9138

2020

A.E. Simonis, K.A. Forney, S. Rankin, J. Ryan, Y. Zhang, A. DeVogelaere, J. Joseph, T. Margolina, A. Krumpel, and S. Baumann-Pickering. 2020. Seal Bomb Noise as a Potential Threat to Monterey Bay Harbor Porpoise. Frontiers in Marine Science, 7. https://doi.org/10.3389/fmars.2020.00142

Aalto, E.A., J.P. Barry, C.A. Boch, S.Y. Litvin, F. Micheli, C.B. Woodson, and G.A. De Leo. 2020. Abalone populations are most sensitive to environmental stress effects on adult individuals. Marine Ecology Progress Series, 643: 75–85. https://doi.org/10.3354/meps13320

Andruszkiewicz, E.A., K.M. Yamahara, C.J. Closek, and A.B. Boehm. 2020. Quantitative PCR assays to detect whales, rockfish, and common murre environmental DNA in marine water samples of the Northeastern Pacific. PLoS ONE, 15: 1–19. https://doi.org/10.1371/journal.pone.0242689

Bach, L.T., A.J. Paul, T. Boxhammer, E. Von der Esch, M. Graco, K.G. Schulz, E. Achterberg, P. Aguayo, J. Arístegui, P. Ayón, I. Baños, A. Bernales, A.S. Boegeholz, F. Chavez, G. Chavez, S.M. Chen, K. Doering, A. Filella, M. Fischer, P. Grasse, M. Haunost, J. Hennke, N. Hernández-Hernández, M. Hopwood, M. Igarza, V. Kalter, L. Kittu, P. Kohnert, J. Ledesma, C. Lieberum, S. Lischka, C. Löscher, A. Ludwig, U. Mendoza, J. Meyer, J. Meyer, F. Minutolo, J.O. Cortes, J. Piiparinen, C. Sforna, K. Spilling, S. Sanchez, C. Spisla, M. Sswat, M. Zavala Moreira, and U. Riebesell. 2020. Factors controlling plankton community production, export flux, and particulate matter stoichiometry in the coastal upwelling system off Peru. Biogeosciences, 17: 4831–4852. https://doi.org/10.5194/bg-17-4831-2020

Beas‐Luna, R., F. Micheli, C.B. Woodson, M. Carr, D. Malone, J. Torre, C.A. Boch, J.E. Caselle, M. Edwards, J. Freiwald, S.L. Hamilton, A. Hernandez, B. Konar, K.J. Kroeker, J. Lorda, G. Montaño‐Moctezuma, and G. Torres‐Moye. 2020. Geographic variation in responses of kelp forest communities of the California Current to recent climatic changes. Global Change Biology, 26: 6457–6473. https://doi.org/10.1111/gcb.15273

Benoit-Bird, K.J., and C.M. Waluk. 2020. Exploring the promise of broadband fisheries echosounders for species discrimination with quantitative assessment of data processing effects. The Journal of the Acoustical Society of America, 147: 411–427. https://doi.org/10.1121/10.0000594

Benoit-Bird, K.J., B.L. Southall, M.A. Moline, D.E. Claridge, C.A. Dunn, K.A. Dolan, and D.J. Moretti. 2020. Critical threshold identified in the functional relationship between beaked whales and their prey. Marine Ecology Progress Series, 654:1–16. https://doi.org/10.3354/meps13521

Bessho-Uehara, M., N. Yamamoto, S. Shigenobu, H. Mori, K. Kuwata, and Y. Oba. 2020. Kleptoprotein bioluminescence: Parapriacanthus fish obtain luciferase from ostracod prey. Science Advances, 6: 1–10. https://doi.org/10.1126/sciadv.aax4942

Bessho-Uehara, M., W. Huang, W.L. Patry, W. E. Browne, J.K. Weng, and S.H.D. Haddock. 2020. Evidence for de novo biosynthesis of the luminous substrate coelenterazine in ctenophores. iScience, 23: 1–11. https://doi.org/10.1016/j.isci.2020.101859

Bessho-Uehara, M., W. R. Francis, and S. Haddock. 2020. Biochemical characterization of diverse deep-sea anthozoan bioluminescence systems. Marine Biology, 167: 1–19. https://doi.org/10.1007/s00227-020-03706-w

Boch, C.A., A. DeVogelaere, E.J. Burton, C. King, C. Lovera, K. Buck, J. Lord, L. Kuhnz, M. Kaiser, C. Reid-Rose, and J.P. Barry. 2020. Guide to translocating coral fragments for deep-sea restoration. National Marine Sanctuary Conservation Science Series: ONMS-20-10. https://repository.library.noaa.gov/view/noaa/25571

Boulais, O., B. Woodward, L. Lundsten, K. Barnard, B. Schlining, K.C. Bell, and K. Katija. 2020. FathomNet: An underwater image training database for ocean exploration and discovery. arXiv: 2007.00114. https://doi.org/10.48550/arXiv.2007.00114

Breusing, C., D.T. Schultz, S. Sudek, A.Z. Worden, and C. Young. 2020. High-contiguity genome assembly of the chemosynthetic gammaproteobacterial endosymbiont of the cold seep tubeworm Lamellibrachia barhami. Molecular Ecology Resources, 20: 1432–1444. https://doi.org/10.1111/1755-0998.13220

Breusing, C., S.B. Johnson, V. Tunnicliffe, D.A. Clague, R.C. Vrijenhoek, and R.A. Beinart. 2020. Allopatric and sympatric drivers of speciation in alviniconcha hydrothermal vent snails. Molecular Biology and Evolution, 37(12): 3469–3484. https://doi.org/10.1093/molbev/msaa177

Burford, B.P., and B.H. Robison. 2020. Bioluminescent backlighting illuminates the complex visual signals of a social squid in the deep sea. Proceedings of the National Academy of Sciences of the United States of America, 117: 8524–8531. https://doi.org/10.1073/pnas.1920875117

Chai, F., K.S. Johnson, H. Claustre, X. Xing, Y. Wang, E. Boss, S. Riser, K. Fennel, O. Schofield, and A. Sutton. 2020. Monitoring ocean biogeochemistry with autonomous platforms. Nature Reviews Earth and Environment, 1: 315–326. https://doi.org/10.1038/s43017-020-0053-y

Clague, D.A., J.B. Paduan, D.W. Caress, J. McClain, and R.A. Zierenberg. 2020. Lava flows erupted in 1996 on North Gorda Ridge Segment and the geology of the nearby Sea Cliff Hydrothermal Vent Field From 1-M resolution AUV mapping. Frontiers in Marine Science, 7: 1–25. https://doi.org/10.3389/fmars.2020.00027

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Clare, M.A., M. Cartigny, P. Talling, K. Rosenberger, C. Paull, J. Hughes Clarke, R. Gwiazda, D. Parsons, J. Xu, R. Perera Silva Jacinto, and R. Apprioual. 2020. Lessons learned from monitoring of turbidity currents and guidance for future platform designs. Geological Society London, Special Publications, 500: 605–634. https://doi.org/10.1144/SP500-2019-173  

Connolly, T.P., P.R. McGill, R.G. Henthorn, D.A. Burrier, and C. Michaud. 2020. Near-bottom currents at Station M in the abyssal Northeast Pacific. Deep Sea Research Part II Topical Studies in Oceanography, 173: 1–12. https://doi.org/10.1016/j.dsr2.2020.104743

Cunha, M., L. Génio, F. Pradillon, M.C. Henry, S. Beaulieu, J. Birch, F. Campuzano, M. Carretón, F. De Leo, J. Gula, S. Laming, D. Lindsay, F. Matos, A. Metaxas, K. Meyer-Kaiser, S. Mills, H. Queiroga, C. Rodrigues, J. Sarrazin, H. Watanabe, R. Young, C. Young. 2020. Foresight Workshop on Advances in Ocean Biological Observations: a sustained system for deep-ocean meroplankton. Research Ideas and Outcomes, 6(e54284) https://doi.org/10.3897/rio.6.e54284

Cyronak, T., Y. Takeshita, T.A. Courtney, E.H. DeCarlo, B.D. Eyre, D.I. Kline, T. Martz, H. Page, N.N. Price, J. Smith, L. Stoltenberg, M. Tresguerres, and A.J. Andersson. 2020. Diel temperature and pH variability scale with depth across diverse coral reef habitats. Limnology and Oceanography Letters, 5(2): 193–203. https://doi.org/10.1002/lol2.10129

Danovaro, R., E. Fanelli, J. Aguzzi, D. Billett, L. Carugati, C. Corinaldesi, A. Dell'Anno, K. Gjerde, A.J. Jamieson, S. Kark, C. McClain, L. Levin, N. Levin, E. Ramirez-Llodra, H. Ruhl, C.R. Smith, P.V.R. Snelgrove, L. Thomsen, C.L. Van Dover, and M. Yasuhara. 2020. Ecological variables for developing a global deep-ocean monitoring and conservation strategy. Nature Ecology and Evolution, 4: 181–192. https://doi.org/10.1038/s41559-019-1091-z

Davis, A.L., K.N. Thomas, F.E. Goetz, B.H. Robison, S. Johnsen, and K.J. Osborn. 2020. Ultra-black camouflage in deep-sea fishes. Current Biology, 30: 3470–3476. https://doi.org/10.1016/j.cub.2020.06.044

Djurhuus, A., C.J. Closek, R.P. Kelly, K.J. Pitz, R.P. Michisaki, H.A. Starks, K.R. Walz, E.A. Andruszkiewicz, E. Olesin, K.A. Hubbard, E. Montes, D. Otis, F.E. Muller-Karger, F.P. Chavez, A.B. Boehm, and M. Breitbart. 2020. Environmental DNA reveals seasonal shifts and potential interactions in a marine community. Nature Communications, 11: 1–9. https://doi.org/10.1038/s41467-019-14105-1

Doo, S., A. Kealoha, A. Andersson, A. Choen, T.L. Hicks, Z.I. Johnson, M.H. Long, P. McElhany, N. Mollica, K.E. Shamberger, N.J. Silbiger, Y. Takeshita, and D.S. Busch. 2020. The challenges of detecting and attributing ocean acidification impacts on marine ecosystems. ICES Journal of Marine Science, 77(7-8): 2411–2422. https://doi.org/10.1093/icesjms/fsaa094

Drazen, J.C., C.R. Smith, K.M. Gjerde, S.H.D. Haddock, G.S. Carter, C.A. Choy, M.R. Clark, P. Dutrieux, E. Goetze, C. Hauton, M. Hatta, J.A. Koslow, A.B. Leitner, A. Pacini, J.N. Perelman, T. Peacock, T.T. Sutton, L. Watling, and H. Yamamoto. 2020. Midwater ecosystems must be considered when evaluating environmental risks of deep-sea mining. Proceedings of the National Academy of Sciences, 117(30): 17455–17460. https://doi.org/10.1073/pnas.2011914117

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Fagundes, M., S.Y. Litvin, F. Micheli, G. De Leo, C.A. Boch, J.P Barry., S. Omidvar, and C.B. Woodson. 2020. Downscaling global ocean climate models improves estimates of exposure regimes in coastal environments. Scientific Reports, 10: 1–11. https://doi.org/10.1038/s41598-020-71169-6