Aiello, I.W., D.S. Stakes, M. Kastner, and R.E. Garrison. 1999. Carbonate vent structures in the upper Miocene Santa Cruz mudstone at Santa Cruz, California. Late Cenozoic fluid seeps and tectonics along the San Gregorio fault zone in the Monterey Bay region, California: 35–51.
Altabet, M.A., C.H. Pilskaln, R. Thunell, C. Pride, D. Sigman, F.P. Chavez, and R. Francois. 1999. The nitrogen isotope biogeochemistry of sinking particles from the margin of the eastern North Pacific. Deep-Sea Research I, 46: 655–679. http://dx.doi.org/10.1016/S0967-0637(98)00084-3
Auzende, J.M., and H.G. Greene. 1999. Marine benthic habitats. Oceanologica Acta, Special issue, 22: 663–668. http://dx.doi.org/10.1016/S0399-1784(00)88946-X
Baco, A.R., C.R. Smith, G.K. Roderick, A.S. Peek, and R.C. Vrijenhoek. 1999. Molecular identification of vesicomyid clams associated with whale-falls on the California Slope. Marine Ecology Progress Series, 182: 137–147.
Barry, J.P., and R.E. Kochevar. 1999. Calyptogena diagonalis, a new vesicomyid bivalve from subduction zone cold seeps in the eastern north Pacific. Veliger, 42: 117–123.
Bates, S.S., C. Scholin, M. Ferguson, and C. Leger. 1999. Application of ribosomal RNA targeted probes to detect Pseudo-nitzschia multiseries and P. pungens in Atlantic Canadian waters. Canadian Technical reports on fisheries and aquatic sciences, 2261: 63–67.
Begnaud, M.L., K.C. McNally, D.S. Stakes, and V.A. Gallardo. 1999. A new crustal velocity model for the Monterey Bay coastal region. Seismological Research Letters, 70: 238.
Blain, S., H. Jannasch, and K.S. Johnson. 1999. In situ chemical analyzers with colorimetric detection. Chemical sensors in oceanography: 49–70.
Borowski, W.S., C.K. Paull, and W. Ussler III. 1999. Global and local variations of interstitial sulfate gradients in deep-water, continental margin sediments: Sensitivity to underlying methane and gas hydrates. Marine Geology, 159: 131–154. http://dx.doi.org/10.1016/S0025-3227(99)00004-3
Brewer, P.G. 1999. Contemplating action: Storing carbon dioxide in the ocean. Roger Revelle Commemorative Lecture, 13: 15.
Brewer, P.G., F. Gernot, E.T. Peltzer, F.M. Orr Jr. 1999. Direct experiments on the ocean disposal of fossil fuel CO2. Science, 284: 943–945.
Burdige, D.J., W.M. Berelson, K.H. Coale, J. McManus, and K.S. Johnson. 1999. Fluxes of dissolved organic carbon from California continental margin sediments. Geochimica et Cosmochimica Acta, 63: 1507–1515. http://dx.doi.org/10.1016/S0016-7037(99)00066-6
Caron, D.A., E.L. Lim, M.R. Dennett, R.J. Gast, C. Kosman, and E.F. DeLong. 1999. Molecular phylogenetic analysis of the heterotrophic chrysophyte genus Paraphysomonas (Chrysophyceae), and the design of rRNA-targeted oligonucleotide probes for two species. Journal of Phycology, 35: 824–837. http://dx.doi.org/10.1046/j.1529-8817.1999.3540824.x
Chavez, F.P., P.G. Strutton, G.E. Friederich, R.A. Feely, G.C. Feldman, D.G. Foley, and M.J. McPhaden. 1999. Biological and chemical response of the Equatorial Pacific Ocean to the 1997-98 El Niño. Science, 286: 2126–2131.
Clague, D.A., J.T. Hagstrum, D.E. Champion, and M.H. Beeson. 1999. Kilauea summit overflows: Their ages and distribution in the Puna District, Hawai'i. Bulletin of Volcanology, 61: 363–381. http://dx.doi.org/10.1007/s004450050279
DeLong, E.F. 1999. Diminutive cells in the oceans - unanswered questions. Size microorganisms: Proceedings of a workshop: 81–84.
DeLong, E.F., C. Schleper, R. Feldman, and R.V. Swanson. 1999. Application of genomics for understanding the evolution of hyperthemophilic and nonthermophilic Crenarchaeota. Biological Bulletin, 196: 363–366.
DeLong, E.F., L.T. Taylor, T.L. Marsh, and C.M. Preston. 1999. Visualization and enumeration of marine planktonic archaea and bacteria by using polyribonucleotide probes and fluorescent in situ hybridization. Applied and Environmental Microbiology, 65: 5554–5563.
Druffel, E.R.M., and B.H. Robison. 1999. Is the deep sea on a diet?. 248: 1139–1140. http://dx.doi.org/10.1126/science.284.5417.1139
Embley, R.W., W.W. Chadwick Jr., D.A. Clague, and D.S. Stakes. 1999. 1998 eruption of Axial Volcano: Multibeam anomalies and seafloor observations. Geophysical Research Letters, 26: 3425–3428.
Etchemendy, S., M. VandenBerg, R. Van Slyke, J. Morgan, and T. Leach. 1999. R/V Western Flyer operability and hull-strength upgrade. Ocean's '99, 1: 501–518.
Giver, K. 1999. Effects of the Invasive Seaweed Sargassum muticum on Native Marine Communities in Northern Puget Sound, Washington. Padilla Bay National Estuarine Research Reserve Reprint Series, 30: 93.
Goffredi, S.K., J.J. Childress, F.H. Lallier, and N.T. Desaulniers. 1999. The ionic composition of the hydrothermal vent tube worm Riftia pachyptila: Evidence for the elimination of SO2-4 and H+ and for a Cl-/HCO-3 shift. Physiological and Biochemical Zoology, 72: 296–306.
Goffredi, S.K., P.R. Girguis, J.J. Childress, and N.T. Desaulniers. 1999. Physiological functioning of carbonic anhydrase in the hydrothermal vent tubeworm Riftia pachyptila. Biological Bulletin, 196: 257–264. http://dx.doi.org/10.2307/1542950
Greene, H.G., M.M. Yoklavich, R. Starr, V.M. O'Connell, W.W. Wakefield, D.L. Sullivan, J.E. MacRea, and G.M. Cailliet. 1999. A classification scheme for deepwater seafloor habitats. Oceanographica Acta, 22: 663–678.
Greene, H.G., N. Maher, T. Naehr, and D. Orange. 1999. Fluid flow in the offshore Monterey Bay region. Pacific section AAPG, volume and guidebook: 1–19.
Grice, C.A. 1999. Marine snow patchiness studies using quantitative video. Marine Sciences, M.S.: 85.
Haddock, S.H.D., and J.F. Case. 1999. Bioluminescence spectra of shallow and deep-sea gelatinous zooplankton: ctenophores, medusae and siphonophores. Marine Biology, 133: 571–582. http://dx.doi.org/10.1007/s002270050497
Hinrichs, K.U., J.M. Hayes, S.P. Sylva, P.G. Brewer, and E.F. DeLong. 1999. Methane-consuming archaebacteria in marine sediments. Nature, 398: 802–805. http://dx.doi.org/10.1038/19751
Hopcroft, R.R., and B.H. Robison. 1999. A new mesopelagic larvacean, Mesochordawis erythrocephalus, sp. nov., from Monterey Bay, with a description of its filtering house. Journal of Plankton Research, 21: 1923–1937.
Johnson, K.S. 1999. Shipboard and laboratory chemical analysis. The future of ocean chemistry in the U.S.: Report of the FOCUS workshop: 97–102.
Johnson, K.S., C. Reimers, and M. DeGrandpre. 1999. In situ chemical analysis. The future of ocean chemistry in the U.S.: Report of the FOCUS workshop: 89–95.
Johnson, K.S., F.P. Chavez, and G.E. Friederich. 1999. Continental-shelf sediment as a primary source of iron for coastal phytoplankton. Nature, 398: 697–700. http://dx.doi.org/10.1038/19511
Kent, A.J.R., D.A. Clague, M. Honda, E.M. Stolper, I.D. Hutcheon, and M.D. Norman. 1999. Widespread assimilation of a seawater-derived component at Loihi Seamount, Hawaii.
Land, L.A., C.K. Paull, and F.N. Spiess. 1999. Abyssal erosion and scarp retreat: Deep tow observations of the Blake Escarpment and Blake Spur. Marine Geology, 160: 63–83. http://dx.doi.org/10.1016/S0025-3227(99)00012-2
Maas, P.A.Y., G.D. O'Mullan, R.A. Lutz, and R.C. Vrijenhoek. 1999. Genetic and morphometric characterization of mussels (Bivalvia: Mytilidae) from Mid-Atlantic hydrothermal vents. Biological Bulletin, 196: 265–272. http://dx.doi.org/10.2307/1542951
Matsumoto, G.I. 1999. Coeloplana thomsoni sp. nov., a new benthic ctenophore (Ctenophora: Platyctenida: Coeloplanidae) from Western Australia. The seagrass flora and fauna of Rottnest Island, Western Australia: 385–393.
McNeil, J., H. Jannasch, T. Dickey, D.J. McGillicuddy, Jr., M.A. Brzezinski, and C. Sakamoto. 1999. New chemical, bio-optical and physical observations of upper-ocean response to the passage of a mesoscale eddy off Bermuda. Journal of Geophyiscal Research, 104: 15537–15548. http://dx.doi.org/10.1029/1999jc900137
Miller, A.J., J.C. McWilliams, N. Schneider, J.S. Allen, J.A. Barth, R.C. Beardsley, F.P. Chavez, T.K. Chereskin, C.A. Edwards, R.L. Haney, K.A. Kelly, J.C. Kindle, L.N. Ly, J.R. Moisan, M.A. Noble, P.P. Niiler, L.Y. Oey, F.B. Schwing, R.K. Shearman, and M.S. Swenson. 1999. Observing and modeling the California Current System. EOS, 80: 533–539.
Mitchell, L. 1999. Quadrapod design - .25, .75 meter quadrapod base for a 28mm lens. The underwater catalog: A guide to methods in underwater research: 136–144.
Monterey Bay Aquarium Research Institute, and National Science Foundation (U.S.). 1999. The future of ocean bottom seismology, 10–11 July 1997 at the Monterey Bay Aquarium Research Institute (MBARI). SIO reference series, 99-3: 55.
Moore, J.C., R.E. Garrison, I.W. Aiello, B.J. Thompson, D. Stakes, and K. Salamy. 1999. Modern and ancient fluid seep systems in the Monterey Bay region, California: Surface and subsurface observations. Pacific section AAPG, volume and guidebook: 93–117.
Murray, A.E., A. Blakis, R. Massana, S. Strawzewski, U. Passow, A. Alldredge, and E.F. DeLong. 1999. A time series assessment of planktonic archaeal variability in the Santa Barbara Channel. Aquatic Microbial Ecology, 20: 129–145. http://dx.doi.org/10.3354/ame020129
Murray, A.E., K.Y. Wu, C.L. Moyer, D.M. Karl, and E.F. DeLong. 1999. Evidence for circumpolar distribution of planktonic archaea in the southern ocean. Aquatic Microbial Ecology, 18: 263–273. http://dx.doi.org/10.3354/ame018263
Nähr, T.H., and G. Bohrmann. 1999. Barium-rich authigenic clinoptilolite in sediments from the Japan Sea - a sink for dissolved barium?. Chemical Geology, 158: 227–244.
Orange, D.L., H.G. Greene, D.L. Reed, J.B. Martin, C.M. McHugh, W.B.F. Ryan, N. Maher, D.S. Stakes, and J.P. Barry. 1999. Widespread fluid expulsion on a translational continental margin: Mud volcanoes, fault zones, headless canyons, and organic-rich substrate in Monterey Bay, California. Geological Society of America Bulletin, 111: 992–1009. http://dx.doi.org/10.1130/0016-7606(1999)111<0992_Wfeoat>2.3.Co;2
Parsons, M.L., C. Scholin, G.J. Doucette, G.A. Fryxell, Q. Dortch, and T.M. Soniat. 1999. Pseudo-nitzschia species (Bacillariophyceae) in Louisiana coastal waters: Molecular probe field trials, genetic variability and domoic acid analyses. Journal of Phycology, 35: 1368–1378. http://dx.doi.org/10.1046/j.1529-8817.1999.3561368.x
Paull, C.K., W. Ussler III, and W.S. Borowski. 1999. Freshwater ice rafting: an additional mechanism for the formation of some high-latitude submarine pockmarks. Geo-Marine Letters, 19: 164–168. http://dx.doi.org/10.1007/s003670050104
Paull, C.K., W. Ussler III, and W.S. Borowski. 1999. Origin of submarine pockmarks. Geo-Marine Letters, 19: 164–168.
Pennington, J.T., M.N. Tamburri, and J.P. Barry. 1999. Development, temperature tolerance, and settlement preference of embryos and larvae of the articulate brachiopod Laqueus californianus. Biological Bulletin, 196: 245–256. http://dx.doi.org/10.2307/1542949
Riemann, L., G.F. Steward, L.B. Fandino, L. Campbell, M. Landry, and F. Azam. 1999. Bacterial community composition during two consecutive NE monsoon periods in the Arabian Sea studied by denaturing gradient gel electrophoresis (DGGE) of rRNA genes. Deep Sea Research Part II: Topical Studies in Oceanography, 46: 1791–1811. http://dx.doi.org/10.1016/S0967-0645(99)00044-2
Robison, B.H. 1999. Shape change behavior by mesopelagic animals. Marine and Freshwater Behaviour and Physiology, 32: 17–25. http://dx.doi.org/10.1080/10236249909379034
Ryan, J.P., J.A. Yoder, and P.C. Cornillon. 1999. Enhanced chlorophyll at the shelfbreak of the Mid-Atlantic Bight and Georges Bank during the spring transition. Limnology and Oceanography, 44: 1–11.
Ryan, J.P., J.A. Yoder, J.A. Barth, and P.C. Cornillon. 1999. Chlorophyll enhancement and mixing associated with meanders of the shelf break front in the Mid-Atlantic Bight. Journal of Geophysical Research, 104: 23479–23493. http://dx.doi.org/10.1029/1999jc900174
Sagarin, R.D., J.P. Barry, S.E. Gilman, and C.H. Baxter. 1999. Climate-related change in an intertidal community over short and long time scales. Ecological monographs, 69: 465–490. http://dx.doi.org/10.1890/0012-9615(1999)069[0465:Crciai]2.0.Co;2
Sandler, S.J., P. Hugenholtz, C. Schleper, E.F. DeLong, N.R. Pace, and A.J. Clark. 1999. Diversity of radA genes from cultured and uncultured Archaea: Comparative analysis of putatative radA proteins and their use as a phylogenetic marker. Journal of Bacteriology, 181: 907–915.
Schlining, B. 1999. Seasonal intrusions of equatorial waters in Monterey Bay and their effects on mesopelagic animal distributions: 68.
Schlining, K.L. 1999. The spot prawn (Pandalus platyceros Brandt 1851) resource in Carmel Submarine Canyon, California: Aspects of fisheries and habitat associations.
Scholin, C., R. Marin III, P.E. Miller, G.J. Doucette, C.L. Powell, J. Howard, P. Haydock, and J. Ray. 1999. Application of DNA probes and a receptor binding assay for detection of Pseudo-nitzschia (Bacillariophyceae) species and domoic acid activity in cultured and natural samples. Journal of Phycology, 35: 1356–1367.
Scholin, C.A., R. Marin III, P.E. Miller, G.J. Doucette, C.L. Powell, P. Haydock, J. Howard, and J. Ray. 1999. DNA probes and a receptor-binding assay for detection of Pseudo-nitzschia (Bacillariophyceae) species and domoic acid activity in cultured and natural samples. Journal of Phycology, 35: 1356–1367. http://dx.doi.org/10.1046/j.1529-8817.1999.3561356.x
Shank, T.M., M.B. Black, K.M. Halanych, R.A. Lutz, and R.C. Vrijenhoek. 1999. Miocene radiation of deep-sea hydrothermal vent shrimp (Caridea: Bresiliidae): Evidence from mitochondrial cytochrome oxidae subunit I. Molecular Phylogenetics and evolution, 12: 244–254.
Sims, K.W.W., D.J. DePaolo, M.T. Murrell, W.S. Baldridge, S. Goldstein, D. Clague, and M. Jull. 1999. Porosity of the melting zone and variations in the solid mantle upwelling rate beneath Hawaii: Inferences from 238U-230Th-226Ra and 235U-231Pa disequilibria. Geochimica et Cosmochimica Acta, 63: 4119–4138.
Stakes, D., C.A. Rigsby, and P.C. Baucom. 1999. Igneous and sedimentary rocks form Monterey Canyon, California and implications for regional tectonics. Pacific section AAPG, volume and guidebook: 75–92.
Stakes, D., D. Orange, J. Paduan, K. Salamy, and N. Maher. 1999. Origin of authigenic cold-seep carbonates from Monterey Bay. Marine Geology, 159: 93–109.
Stakes, D.S., and P. Schiffman. 1999. Hydrothermal alteration within the basement of the sedimented ridge environment of Middle Valley, northern Juan de Fuca Ridge. Geological Society of America Bulletin, 111: 1294–1314. http://dx.doi.org/10.1130/0016-7606(1999)111<1294_Hawtbo>2.3.Co;2
Stakes, D.S., D. Orange, JB. Paduan, K.A. Salamy, and N. Maher. 1999. Cold-seeps and authigenic carbonate formation in Monterey Bay, California. Marine Geology, 159: 93–109. https://doi.org/10.1016/S0025-3227(98)00200-X
Steward, G.F., and F. Azam. 1999. Bromodeoxyuridine as an alternative to super(3)H-thymidine for measuring bacterial productivity in aquatic samples. Aquatic Microbial Ecology, 19: 57–66.
Suzuki, M.T. 1999. Effect of protistan bacterivory on coastal bacterioplankton diversity. Aquatic Microbial Ecology, 20: 261–272. http://dx.doi.org/10.3354/ame020261
Tamburri, M.N., and J.P. Barry. 1999. Adaptations for scavenging by three diverse bathyla species, Eptatretus stouti, Neptunea amianta and Orchomene obtusus. Deep-Sea Research I, 46: 2079–2093. http://dx.doi.org/10.1016/S0967-0637(99)00044-8
Tamburri, M.N., and J.P. Barry. 1999. Corrigendum to "Adaptations for scavenging by three diverse bathyla species Eptatretus stouti, Neptunea amianta and Orchomene obtusus" [Deep-Sea Research 46 (1999) 2079-2093]. Deep Sea Research Part I: Oceanographic Research Papers, 47: 755.
Tivey, M.K., D. Stakes, T. L. Cook, M.D. Hannington, and S. Petersen. 1999. Petrology and geochemistry of massive sulfide samples from the Endeavour segment of the Juan de Fuca Ridge. Journal of Geophyiscal Research, 104: 22859–22883.
Tivey, M.K., D.S. Stakes, T.L. Cook, M.D. Hannington, and S. Petersen. 1999. A model for growth of steep-sided vent structures on the Endeavour Segment of the Juan de Fuca Ridge: Results of a petrologic and geochemical study. Journal of Geophysical Research, 104: 22859–22883. http://dx.doi.org/10.1029/1999jb900107
Walsh, J.J., D.A. Dieterle, F.E. Muller-Karger, R. Bohrer, W.P. Bissett, R.J. Varela, R. Aparicio, R. Diaz, R. Thunell, G.T. Taylor, M.I. Scranton, K.A. Fanning, and E.T. Peltzer. 1999. Simulation of carbon-nitrogen cycling during spring upwelling in the Cariaco Basin. Journal of Geophyiscal Research, 104: 7807–7825. http://dx.doi.org/10.1029/1998jc900120
Wilkin, D.J., K.R. Debure, and Z.W. Roberts. 1999. Query by sketch in DARWIN - digital analysis to recognize whale images on a network. Conference of the Storage and Retrieval for Image and Video Databases, 3656: 41–48.
Yang, H.J., F.A. Frey, D.A. Clague, and M.O. Garcia. 1999. Mineral chemistry of submarine lavas from the Hilo Ridge, Hawaii: Implications for magmatic processes within Hawaiian rift zones. Contributions to Mineralogy and Petrology,135: 355–372.
Alldredge, A.L., U. Passow, and S.H.D. Haddock. 1998. The characteristics and transparent exopolymer particle (TEP) content of marine snow formed from thecate dinoflagellates. Journal of Plankton Research, 20(3): 393–406. doi:10.1093/plankt/20.3.393
Barry, J.P., and R.E. Kochevar. 1998. A tale of two clams: Differing chemosynthetic life styles among vesicomyids in Monterey Bay cold seeps. Cahiers de Biologie Marine, 39: 329–331.
Berger, W.H., and C.B. Lange. 1998. Silica depletion in the thermocline of the glacial North Pacific; corollaries and implications [Monograph]. Topical studies in oceanography; studies of the California current system, Part 1.
Braby, C.E. 1998. Olfactory organs of mesopelagic cephalopods: comparative morphology and ecological function: 79.
Brewer, P.G., F.M. Orr Jr., G. Friederich, K.A. Kvenvolden, and D.L. Orange. 1998. Gas hydrate formation in the deep sea: In situ experiments with controlled release of methane, natural gas, and carbon dioxide. Energy & Fuels, 12: 183–188. http://dx.doi.org/10.1021/ef970172q
Browne, K.A., M.N. Tamburri, and R.K. Zimmer-Faust. 1998. Modeling quantitative structure-activity relationships between animal behavior and environmental signal molecules. Journal of Experimental Biology, 201: 245–258.
Buck, K.R., and J.P. Barry. 1998. Monterey Bay cold seep infauna: quantitative comparison of bacterial mat meiofauna with non-seep control sites. Cahiers de Biologie Marine, 39: 333–335.
Buck, K.R., and W.N. Bentham. 1998. A novel symbiosis between a cyanobacterium, Synechococcus sp., an aplastidic protist, Solenicola setigera, and a diatom, Leptocylindrus mediterraneus, in the open ocean. Marine Biology, 132: 349–355. http://dx.doi.org/10.1007/s002270050401
Buck, K.R., T.G. Nielsen, B.W. Hansen, D. Gastrup-Hansen, and H.A. Thomsen. 1998. Infiltration phyto- and protozooplankton assemblages in the annual sea ice of Disko Island, West Greenland, spring 1996. Polar Biologym, 20: 377–381. http://dx.doi.org/10.1007/s003000050317
Burgess, W.C., P.L. Tyack, B.J. Le Boeuf, and D.P. Costa. 1998. A programmable acoustic recording tag and first results from free-ranging northern elephant seals. Deep-Sea Research II, 45: 1327–1351. http://dx.doi.org/10.1016/S0967-0645(98)00032-0
Chavez, F., and C. Collins. 1998. Studies of the California Current System. Deep Sea Research Part II: Topical Studies in Oceanography, 45.
Chavez, F.P., P.G. Strutton, and M.J. McPhaden. 1998. Biological-physical coupling in the central equatorial Pacific during the onset of the 1997-98 El Niñoo. Geophysical Research Letters, 25: 3543–3546.
Coale, K.H., K.S. Johnson, S.E. Fitzwater, S.P.G. Blain, T. Stanton, and T.L. Coley. 1998. IronEx-I, an in situ iron-enrichment experiment: Experimental design, implementation and results. Deep-Sea Research II, 45: 919–945. http://dx.doi.org/10.1016/S0967-0645(98)00019-8
Cohen, W.D., and M.N. Tamburri. 1998. Distinctive cytoskeletal organization in erythrocytes of the cold-seep vesicomyid clam, Calyptogena kilmeri. Biological Bulletin, 194: 7–13. http://dx.doi.org/10.2307/1542508
Cohen, W.D., and M.N. Tamburri. 1998. Peripheral centrosomes in erythrocytes of the vesicomyid clam, Calyptogena kilmeri: A molluscan erythrocyte cytoskeletal motif. Biological Bulletin, 194: 7–13.
Colbert, D., K.S. Johnson, and K.H. Coale. 1998. Determination of cadmium in seawater using automated on-line preconcentration and direct injection graphite furnace atomic absorption spectrometry. Analytica Chimica Acta, 377: 255–262. http://dx.doi.org/10.1016/S0003-2670(98)00428-0
Davis, A.S., and D.A. Clague. 1998. Changes in the hydrothermal system at Loihi Seamount after the formation of Pele's pit in 1996. Geology, 26: 399–402. http://dx.doi.org/10.1130/0091-7613(1998)026<0399_Cithsa>2.3.Co;2