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2000

Buck, K.R., J.P. Barry, and A.G.B. Simpson. 2000. Monterey Bay cold seep biota: Euglenozoa with chemoautotrophic bacterial epibionts. European Journal of Phycology, 36: 117–126.

Caress, D.W., and D.N. Chayes. 2000. MB-system version 4.6.10. Open source software distributed from the MBARI and L-DEO web sites MBARI, 2000.

Carlson, C.A., D.A. Hansell, E.T. Peltzer, and W.O. Smith Jr. 2000. Stocks and dynamics of dissolved and particulate organic matter in the southern Ross Sea, Antarctica. Deep-Sea Research II, 47: 3201–3225. http://dx.doi.org/10.1016/S0967-0645(00)00065-5

Chavez, F.P., and C.A. Collins. 2000. Corrigendum to "Studies of the California Current System Part 2"; [Deep-Sea Research II, 47 (5–6), 2000]. Deep Sea Research Part II: Topical Studies in Oceanography, 47: 1.

Chavez, F.P., and C.A. Collins. 2000. Studies of the California current system part 2. Deep-Sea Research II, 47: 5–6.

Chavez, F.P., and C.A. Collins. 2000. Studies of the California current system: Present, past and future. Deep-Sea Research II, 47: 761–763.

Clague, D.A., A.S. Davis, J.L. Bischoff, J.E. Dixon, and R. Geyer. 2000. Lava bubble-wall fragments formed by submarine hydrovolcanic explosions on Lo'ihi Seamount and Kilauea Volcano. Bulletin of Volcanology, 61: 437–449.

Clague, D.A., and J.E. Dixon. 2000. Extrinsic controls on the evolution of Hawaiian ocean island volcanoes. Geochemistry, Geophysics, Geosystems: G3, 1: 1010. http://dx.doi.org/10.1029/1999GC000023

Clague, D.A., J.R. Reynolds, and A.S. Davis. 2000. Near-ridge seamount chains in the northeastern Pacific Ocean. Journal of Geophysical Research, 105: 16541–16561. http://dx.doi.org/10.1029/2000JB900082

Davis, A.S., and D.A. Clague. 2000. President Jackson Seamounts, northern Gorda Ridge: Tectonomagmatic relationship between on- and off-axis volcanism. Journal of Geophysical Research, 105: 27939–27956. http://dx.doi.org/10.1029/2000jb900291

Davis, D.L. 2000. A data compression and sampling methodology for ocean observing systems. Oceans 2000: 1219–1225.

Dawson, S.C., E.F. DeLong, and N.R. Pace. 2000. Phylogenetic and ecological perspectives on uncultured Crenarchaeota and Korarchaeota.

De Grasse, T., N. McNutt, M. Kemper, B. Clinton, and H.R. Clinton. 2000. Exploration under the sea, beyond the stars. Millennium evenings at the White House.

Di Meo, C.A., A.E. Wilber, W.E. Holben, R.A. Feldman, R.C. Vrijenhoek, and S.C. Cary. 2000. Genetic variation among endosymbionts of widely distributed vestimentiferan tubeworms. Applied and Environmental Microbiology, 66: 651–658.

Dickens, G.R., and C.K. Paull. 2000. Technical appendix: Status of the Isothermal Decompression Analysis System (IDAS). Proceedings of the Ocean Drilling Program, Scientific Results, 164: 437–438.

Dickens, G.R., Borowski, W.S., Wehner, H., Paull, C.K., and ODP Leg 164 Scientific Party. 2000. Data report: Additional shipboard information for the pressure core sampler (PCS) at sites 994, 995, 996, and 997, Data Report. Proceeding of the Ocean Drilling Program, Scientific Results, 164: 439–443.

Dickens, G.R., P.J. Wallace, C.K. Paull, and W.S. Borowski. 2000. Detection of methane gas hydrate in the pressure core sampler (PCS): Volume-pressure-time relations during controlled degassing experiments. Proceedings of the Ocean Drilling Program, Scientific Results, 164: 113–126.

DiTullio, G.R., J. Grebmeier, K.R. Arrigo, M.P. Lizotte, D.H. Robinson, A. Leventer, J.P. Barry, M. VanWoert, and R.B. Dunbar. 2000. Rapid and early export of Phaeocystis antarctica blooms in the Ross Sea, Antarctica. Nature, 404: 595–598. http://dx.doi.org/10.1038/35007061

Ducklow, H.W., M.L. Dickson, D.L. Kirchman, G. Steward, J. Orchardo, J. Marra, and F. Azam. 2000. Constraining bacterial production, conversion efficiency and respiration in the Ross Sea, Antarctica, January-February, 1997. Deep-Sea Research II, 47: 3227–3247. http://dx.doi.org/10.1016/S0967-0645(00)00066-7

Dunbar, R.B., K. Arrigo, J.P. Barry, D. Bromwich, J. Ditullio, J. Grebmeier, A. Leventer, M. Lizotte, D. Robinson, and M.V. Woert. 2000. Interannual variability of the Ross Sea Polynya ecosystem: Climatic forcing of polar primary and export productio. EOS, Transactions of the American Geophysical Union.

Dunbar, R.B., K. Arrigo, J.P. Barry, D. Bromwich, J. Ditullio, J. Grebmeier, L. Langone, A. Leventer, M. Lizotte, D. Robinson, and M.V. Woert. 2000. Interannual variability of production and C export in the Ross Sea Polyny. JGOFS symposium.

Eichhubl, P., and J.R. Boles. 2000. Rates of fluid flow in fault systems–evidence for episodic fluid flow in the Miocene Monterey Formation, coastal California. American Journal of Science, 300: 571–600. http://dx.doi.org/10.2475/ajs.300.7.571

Eichhubl, P., H.G. Greene, T.H. Naehr, and N. Maher. 2000. Structural control of fluid flow: Offshore fluid seepage in the Santa Barbara Basin, California. Journal of Geochemical Exploration, 69–70: 545–549. http://dx.doi.org/10.1016/S0375-6742(00)00107-2

Fitzwater, S.E., K.S. Johnson, R.M. Gordon, K.H. Coale, and W.O. Smith Jr. 2000. Trace metal concentrations in the Ross Sea and their relationship with nutrients and phytoplankton growth. Deep-Sea Research II, 47: 3159–3179. http://dx.doi.org/10.1016/S0967-0645(00)00063-1

Frey, F.A., D.A. Clague, J.J. Mahoney, and J.M. Sinton. 2000. Volcanism at the edge of the Hawaiian plume: Petrogenesis of submarine alkalic lavas from the North Arch Volcanic Field. Journal of Petrology, 41: 667–691. http://dx.doi.org/10.1093/petrology/41.5.667

Garrison, D.L., M.M. Gowing, M.P. Hughes, L. Campbell, D.A. Caron, M.R. Dennett, A. Shalapyonok, R.J. Olson, M.R. Landry, S.L. Brown, H.B. Liu, F. Azam, G.F. Steward, H.W. Ducklow, and D.C. Smith. 2000. Microbial food web structure in the Arabian Sea: a US JGOFS study. Deep-Sea Research II, 47: 1387–1422. http://dx.doi.org/10.1016/S0967-0645(99)00148-4

Gebruk, A.V., P. Chevaldonné, T. Shank, R.A. Lutz, and R.C. Vrijenhoek. 2000. Deep-sea hydrothermal vent communities of the Logatchev area (14°45'N, Mid-Atlantic Ridge): Diverse biotypes and high biomass. Journal of the Marine Biological Association of the United Kingdom, 80: 383–393.

Goyet, C., R. Healy, and J.P. Ryan. 2000. Global distribution of total inorganic carbon and total alkalinity below the deepest winter mixed layer depths: 40.

Greene, H.G., M.M. Yoklavich, V.W. O'Connell, W.W. Wakefield, Brylinsky, and G.M. Cailliet. 2000. Mapping and classification of deep seafloor habitats. ICES CM 2000/T:08: 10.

Harris, R.N., G. Garven, J. Georgen, M.K. McNutt, L. Christiansen, and R.P. Von Herzen. 2000. Submarine hyrdogeology of the Hawaiian archipelagic apron: Part 2, Numerical simulations of coupled heat transport and fluid flow. Journal of Geophysical Research, 105: 371–386.

Harris, R.N., R.P. Von Herzen, M.K. McNutt, G. Garven, and K. Jordahl. 2000. Submarine hydrogeology of the Hawaiian archipelagic apron: Part 1, Heat flow patterns north of Oahu and Maro Reef. Journal of Geophysical Research, 105: 353–369.

Hatcher, G.A., Jr., and N. Maher. 2000. Real-time GIS for marine applications [Monograph] Marine and coastal geographical information systems.

Hinrichs, K.U., R.E. Summons, V. Orphan, S.P. Sylva, and J.M. Hayes. 2000. Molecular and isotopic analysis of anaerobic methane-oxidizing communities in marine sediments. Organic Geochemistry, 31: 1685–1701. http://dx.doi.org/10.1016/S0146-6380(00)00106-6

Hoehler, T.M., W.S. Borowski, M.J. Alperin, N.M. Rodriguez, and C.K. Paull. 2000. Model, stable isotope, andn radiotracer characterization of anaerobic methane oxidation in gas hydrate-bearing sediments of the Blake Ridge. Proceedings of the Ocean Drilling Program, Scientific Results, 164: 79–85.

Holder, G.D., and P.R. Bishnoi. Edited by C.W. Bryer, J.P. Monfort, Y.H. Mori, P.K. Notz, C.K. Paull, J. Ripmeester, E.D. Sloan, P.S. Somasundaran, M.H. Youssif, and R. Warinski. 2000. Gas Hydrates: Challenges for the Future, 912: 1044.

Hunt, J.C., and B.A. Seibel. 2000. Life history of Gonatus onyx (Cephalopoda: Teuthoidea): ontogenetic changes in habitat, behavior and physiology. Marine Biology, 136: 543–552. http://dx.doi.org/10.1007/s002270050714

Hunt, J.C., L.D. Zeidberg, W.M. Hamner, and B.H. Robison. 2000. The behaviour of Loligo opalescens (Mollusca: Cephalopoda) as observed by a remotely operated vehicle (ROV). Journal of the Marine Biological Association of the United Kingdom, 80: 873–883.

Johnson, K.S., and R. Byrne. 2000. Modern autonomous observing systems. Ocean Carbon Transport, Exchanges and Transformations, Proceedings of a Workshop: 41–55.

Johnson, K.S., V.A. Elrod, J.L. Nowicki, K.H. Coale, and H. Zamzow. 2000. Continuous flow techniques for on site and in situ measurements of metals and nutrients in sea water. In situ monitoring of aquatic systems: Chemical analysis and speciation: 223–252.

Kastens, K., E. Bonatti, D. Caress, G. Carrara, O. Dauteuil, G. Frueh-Green, and M. Ligi. 2000. The Vema transverse ridge (Central Atlantic). Marine Geophysical Researches: 20: 533–556.

Kastner, M., B. Carson, D.B. Bartlett, J. Jaeger, K. Bidle, and H. Jannasch. 2000. An in situ experiment of methane sewquestration as gas hydrate, authigenic carbonate, and loss to the water column and/or atmosphere. Gas Hydrates: Challenges for the Future: 32–37.

Kirkwood, W.J. 2000. Tiburon: MBARI's New ROV Integrated to a SWATH R/V. Sea Technology, 41: 51–55.

Kudela, R.M., and F.P. Chavez. 2000. Modeling the impact of the 1992 El Nino on new production in Monterey Bay, California. Deep-Sea Research Part II: Topical Studies in Oceanography, 47: 1055–1076. http://dx.doi.org/10.1016/S0967-0645(99)00136-8

Massana, R., E.F. DeLong, and C. Pedrós-Alió. 2000. A few cosmopolitan phylotypes dominate planktonic archaeal assemblages in widely different oceanic provinces. Applied and Environmental Microbiology, 66: 1777–1787.

Matthews, M.B. 2000. On the linear minimum-mean-squared-error estimatin of an undersampled wide-sense stationary random process. IEEE Transactions on Signal Processing, 48: 272–275.

McCann, M. 2000. Remotely Operated Vehicle (ROV) dive visualization. Computer Graphics, 34: 51.

McNutt, M.K. 2000. Achievements in marine geology and geophysics. 50 years of ocean discovery: National Science Foundation, 1950–2000: 51–64.

McNutt, M.K. 2000. Discovering Earth's final frontier: A U.S. strategy for ocean exploration: The report of the President's Panel on Ocean Exploration: 61.

McNutt, M.K. 2000. Heat flow variations over Hawaiian swell controlled by near-surface processes, not plume properties. Evolution of Hawaiian Volcanoes, Geophysical Monograph, AGU.

McNutt, M.K. 2000. The future of marine geology and geophysics: A summary. 50 years of ocean discovery: National Science Foundation, 1950–2000: 172–183.

McNutt, M.K., and A. Bonneville. 2000. A shallow, chemical origin for the Marquesas Swell. Geochemistry, Geophysics, Geosystems: G3, 1.

Mellinger, D.K., and C.W. Clark. 2000. Recognizing transient low-frequency whale sounds by spectrogram correlation. Journal of the Acoustical Society of America, 107: 3518–3529.

Miller, P.E., and C.A. Scholin. 2000. On detection of Pseudo-nitzschia (Bacillariophyceae) species using whole cell hybridization: Sample fixation and stability. Journal of Phycology, 36: 251–265.

Miller, P.E., and C.A. Scholin. 2000. On detection of Pseudo-nitzschia species using rRNA-targeted probes: Sample fixation and stability. Journal of Phycology, 36: 238–250.

Naehr, T.H., N.M. Rodriguez, G. Bohrmann, C.K. Paull, and R. Botz. 2000. Methane-derived authigenic carbonates associated with gas hydrate decomposition and fluid venting above the Blake Ridge Diapir. Proceedings of the Ocean Drilling Program, Scientific Results, 164: 285–300.

Naka, J., E. Takahashi, D.A. Clague, M.O. Garcia, T. Hanyu, E. Herrero-Bervera, J. Ishibashi, O. Ishizuka, K. Johnson, T. Kanamatsu, I. Kaneoka, P. Lipman, A. Malahoff, and G. McMurtry. 2000. Tectono-magmatic processes investigated at deep-water flanks of Hawaiian volcanoes. EOS, Transactions, 81: 221–227.

Nicol, S., T. Pauly, N.L. Bindoff, and P.G. Strutton. 2000. BROKE; a biological/oceanographic survey off the coast of East Antarctica (80°E-150°E) carried out in January–March 1996. Deep-Sea Research II, 47: 2281–2297. http://dx.doi.org/10.1016/S0967-0645(00)00026-6

Nicol, S., T. Pauly, N.L. Bindoff, S. Wright, D. Thiele, G.W. Hosie, P.G. Strutton, and E. Woehler. 2000. Ocean circulation off east Antarctica affects ecosystem structure and sea-ice extent. Nature, 406: 504–507. http://dx.doi.org/10.1038/35020053

O'Reilly, T. 2000. An object oriented approach to AUV software development. UUVs Conference at Southampton Oceanography Centre: 91–103.

Orphan, V.J., L.T. Taylor, D. Hafenbradl, and E.F. DeLong. 2000. Culture-dependent and culture-independent characterization of microbial assemblages associated with high-temperature petroleum reservoirs. Applied and Environmental Microbiology, 66: 700–711.

Paull, C.K., and R. Matsumoto. 2000. Leg 164 overview. Proceedings of the Ocean Drilling Program, Scientific Results, 164: 3–10.

Paull, C.K., and W.P. Dillon. 2000. Natural gas hydrates: Occurrence, distribution, and detection. Geophysical Monograph, 124: 315.

Paull, C.K., R. Matsumoto, P. Wallace, and W.P. Dillon. 2000. Proceedings of the Ocean Drilling Project, Scientific Results, 164.

Paull, C.K., T.D. Lorenson, G. Dickens, W.S. Borowski, W. Ussler III, and K.A. Kvenvolden. 2000. Comparisons of In situ and core gas measurements in ODP Leg 164 bore holes. Gas hydrates: Challenges for the future, 912: 23–31.

Paull, C.K., T.D. Lorenson, W.S. Borowski, W. Ussler III, K. Olsen, and N.M. Rodriguez. 2000. Isotopic composition of CH4, CO2 species, and sedimentary organic matter within samples from the Blake Ridge: Gas source implications. Proceedings of the Ocean Drilling Program, Scientific Results, 164: 67–78.

Paull, C.K., W. Ussler III, and W.P. Dillon. 2000. Potential role of gas hydrate decomposition in generating submarine slope failures. Natural Gas Hydrate in Oceanic and Permafrost Environments, 5: 149–156.

Peek, A.S., B.S. Gaut, R.A. Feldman, J.P. Barry, R.E. Kochevar, R.A. Lutz, and R.C. Vrijenhoek. 2000. Neutral and nonneutral mitochondrial genetic variation in deep sea clams from the family Vesicomyidae. Journal of Molecular Evolution, 50: 141–153.

Peltzer, E.T., and P.G. Brewer. 2000. Practical physical chemistry and empirical predictions of methane hydrate stability. Natural gas hydrate: In oceanic and permafrost environments: 17–28.

Pennington, J.T., and F.P. Chavez. 2000. Seasonal fluctuations of temperature, salinity, nitrate, chlorophyll and primary production at station H3/M1 over 1989-1996 in Monterey Bay, California. Deep-Sea Research II, 47: 947–973.

Rhodes, L.L., J. Adamson, and C.A. Scholin. 2000. Pseudo-nitzschia multistriata (Bacillariophyceae) in New Zealand. New Zealand Journal of Marine and Freshwater Research, 34: 463–467.

Robison, B.H. 2000. The coevolution of undersea vehicles and deep-sea research. Marine Technology Society Journal, 33: 69–73.

Rodriguez, N.M., and C.K. Paull. 2000. Data report: 14C dating of sediment of the uppermost Cape Fear slide plain: Constraints on the timing of this massive submarine landslide. Proceeding of the Ocean Drilling Program, Scientific Results, 164: 325–327.

Rodriguez, N.M., C.K. Paull, and W.S. Borowski. 2000. Carbonate diagenetic zonations within gas hydrate-bearing sedimentatry sections on the Blake Ridge, offshore SE North America. Proceeding of the Ocean Drilling Program, Scientific Results, 164: 301–312.

Scholin, C.A. 2000. Application of DNA probes for detection of harmful algae. Journal of Shellfish Research, 19: 637.

Scholin, C.A., F. Gulland, G.J. Doucette, S. Benson, M. Busman, F.P. Chavez, J. Cordaro, R. DeLong, A. De Vogelaere, J. Harvey, M. Haulena, K. Lefebvre, T. Lipscomb, S. Loscutoff, L.J. Lowenstine, R. Marin III, P.E. Miller, W.A. McLellan, P.D.R. Moeller, C.L. Powell, T. Rowles, P. Silvagni, M.W. Silver, T. Spraker, V. Trainer, and F.M. Van Dolah. 2000. Mortality of sea lions along the central California coast linked to a toxic diatom bloom. Nature, 403: 80–84. http://dx.doi.org/10.1038/47481

Seibel, B.A., F.G. Hochberg, and D.B. Carlini. 2000. Life history of Gonatus onyx (Cephalopoda: Teuthoidea): Deep-sea spawning and post-spawning egg care. Marine Biology, 137: 519–526. http://dx.doi.org/10.1007/s002270000359

Sherlock, R.E., and B.H. Robinson. 2000. Effects of Temperature on the Development and Survival of Nanomia bijuga (Hydrozoa, Siphonophora). Invertebrate Biology, 119: 379–385.

Silguero, J.M.B., and B.H. Robison. 2000. Seasonal abundance and vertical distribution of mesopelagic calycophoran siphonophores in Monterey Bay, CA. Journal of Plankton Research, 22: 1139–1153. http://dx.doi.org/10.1093/plankt/22.6.1139

Strutton, P.G., and F.P. Chavez. 2000. Primary productivity in the equatorial Pacific during the 1997-98 El Niño. Journal of Geophyiscal Research, 105: 26089–26101.

Strutton, P.G., F.B. Griffiths, R.L. Waters, S.W. Wright, and N.L. Bindoff. 2000. Primary productivity off the coast of east Antarctica (80°E –150°E): January to March 1996. Deep-Sea Research II, 47: 2327–2362. http://dx.doi.org/10.1016/S0967-0645(00)00028-X

Suzuki, M.T., L.T. Taylor, and E.F. DeLong. 2000. Quantitative analysis of small-subunit rRNA genes in mixed microbial populations employing 5'-nuclease assays. Applied and Environmental Microbiology, 66: 4605–4614.

Tamburri, M.N., E.T. Peltzer, G.E. Friederich, I. Aya, K. Yamane, and P.G. Brewer. 2000. A field study of the effects of CO2 ocean disposal on mobile deep-sea animals. Marine Chemistry, 72: 95–101. https://doi.org/10.1016/S0304-4203(00)00075-X

Trieloff, M., J. Kunz, D.A. Clague, D. Harrison, and C.J. Allègre. 2000. The nature of pristine noble gases in mantle plumes. Science, 288: 1036–1038.

Ussler III, W., C.K. Paull, and P.D. Fullagar. 2000. Pore-water strontium isotopes from the Leg 171B drilling transect down the Blake Spur. Proceedings of the Ocean Drilling Program, scientific results, 171B: 1–17.

Wagner, D., H.G. Greene, and C. Pridmore. 2000. Geologic map of the Monterey region.

Wallace, P.J., G.R. Dickens, C.K. Paull, and W. Ussler III. 2000. Effects of core retrieval and degassing on the carbon isotope composition of methane in gas hydrate- and free gas-bearing sediments from the Blake Ridge. Proceeding of the Ocean Drilling Program, Scientific Results, 164: 101–112.

Wheat, C.G., H.W. Jannasch, J.N. Plant, C.L. Moyer, F.J. Sansone, and G.M. McMurtry. 2000. Continuous sampling of hydrothermal fluids from Loihi Seamount after the 1996 event. Journal of Geophysical Research - Solid Earth, 105: 19353–19368. http://dx.doi.org/10.1029/2000jb900088

Wilkerson, F.P., R.C. Dugdale, R.M. Kudela, and F.P. Chavez. 2000. Biomass and productivity in Monterey Bay, California: contribution of the large phytoplankton. Deep Sea Research Part II: Topical Studies in Oceanography, 47: 1003–1022. http://dx.doi.org/10.1016/S0967-0645(99)00134-4

Yoklavich, M.M., H.G. Greene, G.M. Cailliet, D.E. Sullivan, R.N. Lea, and M.S. Love. 2000. Habitat associations of deep-water rockfishes in a submarine canyon: An example of a natural refuge. Fishery Bulletin, 98: 625–641.

1999

Ahmad, A., J.P. Barry, and D.C. Nelson. 1999. Phylogenetic affinity of a wide, vacuolate, nitrate-accumulating Beggiatoa sp. from Monterey Canyon, California, with Thioploca spp. Applied and Environmental Microbiology, 65: 270–277.