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2001

Paull, C.K., S. Stratton, M. Conway, K Brekke, Dawe, T. Craig, N. Maher, and W. Ussler III. 2001. Deep sea vibracoring system improves ROV sampling capability. EOS, Transactions, 82: 325–326.

Pennington, J.T, and S.A. Stricker. 2001. Phylum Brachiopoda. Atlas of Marine Invertebrate Larval Forms, 441–461.

Plafker, G., H.G. Greene, N.M. Maher, and C. Synolakis. 2001. The destructive 1994 submarine landslide and tsunami at Skagway, Alaska: An example of a near shore submarine failure. NATO Advanced Workshop on Submarine Underwater Ground Failures on Tsunami Generation, Modeling, Risk, and Mitigation.

Podar, M., S.H.D. Haddock, M.L. Sogin, and G.R. Harbison. 2001. A molecular phylogenetic framework for the phylum Ctenophora using 18S rRNA genes. Molecular Phylogenetics and Evolution, 21: 218–230. http://dx.doi.org/10.1006/mpev.2001.1036

Polito, P.S., Ryan, J.P., W.T. Liu, and F.P. Chavez. 2001. Oceanic and atmospheric anomalies of tropical instability waves. Geophysical Research Letters, 28: 2233–2336. http://dx.doi.org/10.1029/2000gl012400

Purcell, J.E., D.L. Breitburg, M.B. Decker, W.M. Graham, M.J. Youngbluth, and K.A. Raskoff. 2001. Pelagic cnidarians and ctenophores in low dissolved oxygen environments: A review. Coastal hypoxia: Consequences for living resources and ecosystems, 58: 77–100.

Raskoff, K.A. 2001. The ecology of the mesopelagic cnidarians in Monterey Bay: 267.

Rau, G.H., F.P. Chavez, and G.E. Friederich. 2001. Plankton 13C/12C variations in Monterey Bay, California: Evidence of non-diffusive inorganic carbon uptake by phytoplankton in an upwelling environment. Deep Sea Research Part I: Oceanographic Research Papers, 48: 79–94.

Rau, G.H., S. Ralston, J.R. Southon, and F.P. Chavez. 2001. Upwelling and the condition and diet of juvenil rockfish: A study using 14C, 13C, and 15N natural abundances. Limnology and Oceanography, 46: 1565–1570.

Rehder, G., and E. Suess. 2001. Methane and pCO2 in the Kuroshio and the South China Sea during maximum summer surface temperatures. Marine Chemistry, 75: 89–108.

Robison, B.H. 2001. Water column life. Atlas of the ocean: the deep frontier: 98–99.

Rodgers, D.H., A. Maffei, P.M. Beauchamp, G. Massion, A.D. Chave, T.M. McGinnis, and S. Gauder. 2001. NEPTUNE regional observatory system design. MTS/IEEE Oceans 2001: An Ocean Odyssey: 1356–1365.

Ryan, J.P., J.A. Yoder, and D.W. Townsend. 2001. Influence of a Gulf Stream warm-core ring on water mass and chlorophyll distributions along the southern flank of Georges Bank. Deep-Sea Research II, 48: 159–178. http://dx.doi.org/10.1016/S0967-0645(00)00117-X

Salamy, K.A., M. Chaffey, J. Erickson, D. Au, T.C. O'Reilly, and D. Stakes. 2001. Rock coring technology on the Juan de Fuca plate with the MBARI ROV Tiburon. Oceanology International.

Sayles, F.L., W.R. Martin, Z. Chase, and R.F. Anderson. 2001. Benthic remineralization and burial of biogenic SiO2, CaCO3, organic carbon, and detrital material in the Southern Ocean along a transect at 170º West. Deep-sea Research II, 48: 4323–4383.

Seibel, B.A., and D.B. Carlini. 2001. Metabolism of pelagic cephalopods as a function of habitat depth: A reanalysis using phylogenetically independent contrasts. Biological Bulletin, 201: 1–5. http://dx.doi.org/10.2307/1543519

Singh, H., J.G. Bellingham, F. Hover, S. Lerner, B. Moran, K. vonDerHeydt, and D. Yoerger. 2001. Docking for an autonomous ocean sampling network. Journal of Oceanic Engineering, 26: 498–514. http://dx.doi.org/10.1109/48.972084

Stakes, D., B. Romanowicz, P.R. McGill, D. Neuhauser, K.S. Johnson, H.W. Jannasch, and C.G. Wheat. 2001. Multidisciplinary observatory development in Monterey Bay. Joint Ocean Hemisphere Network Project/International Ocean Network (OHP/ION) Symposium.

Steward, G.F. 2001. Fingerprinting viral assemblages by Pulsed Field Gel Electrophoresis (PFGE). Methods in Microbiology: Marine Microbiology, 30: 85–103.

Strutton, P.G., J.P. Ryan, and F.P. Chavez. 2001. Enhanced chlorophyll associated with tropical instability waves in the equatorial Pacific. Geophysical Research Letters, 28: 2005–2008. http://dx.doi.org/10.1029/2000gl012166

Stutzmann, E., J.P. Montagner, A. Sebai, W.C. Crawford, J.L. Thirot, P. Tarits, D. Stakes, B. Romanowicz, J.F. Karczewski, J.C. Koening, J. Savary, D. Neuhauser, and S. Etchemendy. 2001. MOISE: A prototype multiparameter ocean-bottom station. Bulletin of the Seismological Society of America, 91: 885–892. http://dx.doi.org/10.1785/0120000035

Suzuki, M.T., C.M. Preston, F.P. Chavez, and E.F. DeLong. 2001. Quantitative mapping of bacterioplankton populations in seawater: Field tests across an upwelling plume in Monterey Bay. Aquatic Microbial Ecology, 24: 117–127. http://dx.doi.org/10.3354/ame024117

Suzuki, M.T., O. Béjà, L.T. Taylor, and E.F. DeLong. 2001. Phylogenetic analysis of ribosomal RNA operons from uncultivated coastal marine bacterioplankton. Environmental Microbiology, 3: 323–331.

Takahashi, H., C.E. Braby, and A.R. Grossman. 2001. Sulfur economy and cell wall biosynthesis during sulfur limitation of Chlamydomonas reinhardtii. Plant Physiol, 127: 665–673.

Tervalon, N., and W. Kirkwood. 2001. Ice profiling sonar for an AUV: an approach for obtaining SCICEX quality draft data. AUV Sensor Workshop.

Torres, M.E., J.P. Barry, D.A. Hubbard, and E. Suess. 2001. Reconstructing the history of fluid flow at cold seep sites from Ba/Ca ratios in vesicomyid clam shells. Limnology and Oceanography, 46: 1701–1708.

Trieloff, M., J. Kunz, D.A. Clague, D. Harrison, and C.J. Allegre. 2001. Reply to comment on "The nature of pristine noble gases in mantle plumes," by C.J. Ballentine, D. Porcelli, and R. Weiler. Science, 291: 2269.

Tyrrell, J.V., P.R. Bergquist, P.L. Bergquist, and C.A. Scholin. 2001. Detection and enumeration of Heterosigma akashiwo and Fibrocapsa japonica (Raphidophyceae) using rRNA-targeted oligonucleotide probes. Phycologia, 40: 457–467. http://dx.doi.org/10.2216/i0031-8884-40-5-457.1

Van Slyke, R.J., J.M. Morgan, T.S. Leach, and S.A. Etchemendy. 2001. SWATH research vessel hull strength upgrade. Marine Technology, 38: 177–185.

Vecchione, M., R.E. Young, A. Guerra, D.J. Lindsay, D.A. Clague, J.M. Bernhard, W.W. Sager, A.F. Gonzalez, F.J. Rocha, and M. Segonzac. 2001. Worldwide observations of remarkable deep-sea squids. Science, 294: 2505–2506. http://dx.doi.org/10.1126/science.294.5551.2505

W. Ussler, III., and C.K. Paull. 2001. Ion exclusion associated with marine gas hydrate deposits. Natural gas hydrates: Occurrence, distribution, and detection, 124: 41–51.

Wilcox, J.S., J.G. Bellingham, Y. Zhang, and A.B. Baggeroer. 2001. Oceanographic surveys with autonomous underwater vehicles: Performance metrics and survey design. Journal of Oceanic Engineering, 26: 711–725.

Xu, W., R.P. Lowell, and E.T. Peltzer. 2001. Effect of seafloor temperature and pressure variations on methane flux from a gas hydrate layer: Comparison between current and late Paleocene climate conditions. Journal of Geophyiscal Research, 106: 26413–26423. http://dx.doi.org/10.1029/2001jb000420

Zhang, Y., A.B. Baggeroer, and J.G. Bellingham. 2001. Spectral feature classification of oceanographic processes using an autonomous underwater vehicle. IEEE Journal of Oceanic Engineering, 26: 726–741. http://dx.doi.org/10.1109/48.972115

2000

Barry, J.P., and N. Maher. 2000. Observation of the prickly shark, Echinorhinus cookei, from the oxygen minimum zone in Santa Barbara Basin, California. California Fish and Game, 86: 213–215.

Barry, J.P., K.R. Buck, S.K. Goffredi, and J. Hashimoto. 2000. Ultrastructure studies of two chemosynthetic invertebrate-bacterial symbioses (Lamellibrachia sp. and Acharax sp.) from the Hatsushima cold seeps in Sagami Bay, Japan. JAMSTEC Journal of Deep-Sea Research, 16: 91–99.

Begnaud, M.L., and D.S. Stakes. 2000. Constraining continental margin seismicity by extending on-shore seismograph stations to critical off-shore sites. Bulletin of the Seismological Society of America, 90: 414–424. http://dx.doi.org/10.1785/0119990115

Begnaud, M.L., K.C. McNally, D.S. Stakes, and V.A. Gallardo. 2000. A crustal velocity model for locating earthquakes in Monterey Bay, California. Bulletin of the Seismological Society of America, 90: 1391–1408. http://dx.doi.org/10.1785/0120000016

Béjà, O., L. Aravind, E.V. Koonin, M.T. Suzuki, A. Hadd, L. Nguyen, S.B. Jovanovich, C.M. Gates, R.A. Feldman, J.L. Spudich, E.N. Spudich, and E.F. DeLong. 2000. Bacterial rhodopsin: evidence for a new type of phototrophy in the sea. Science, 289: 1902–1906.

Béjà, O., M.T. Suzuki, E.V. Koonin, L. Aravind, A. Hadd, L.P. Nguyen, R. Villacorta, M. Amjadi, C. Garrigues, S.B. Jovanovich, R.A. Feldman, and E.F. DeLong. 2000. Construction and analysis of bacterial artificial chromosome libraries from a marine microbial assemblage. Environmental Microbiology, 2: 516–529.

Bellingham, J.G., J. Steitlien, J. Overland, S. Jajan, P. Stein, J. Stannard, W. Kirkwood, and D. Yoerger. 2000. An arctic basic observational capability using AUVs. Oceanography, 13.

Bernhard, J.M., K.R. Buck, M.A. Farmer, and S.S. Bowser. 2000. The Santa Barbara Basin is a symbiosis oasis. Nature, 403: 77–80. http://dx.doi.org/10.1038/47476

Borowski, W.S., and C.K. Paull. 2000. Nitrogen isotopic composition of pore-water ammoniuim, Blake Ridge, site 997, ODP Leg 164, Data Report. Proceeding of the Ocean Drilling Program, Scientific Results, 164: 171–172.

Borowski, W.S., T.M. Hoehler, M.J. Alperin, N.M. Rodriguez, and C.K. Paull. 2000. Significance of anaerobic methane oxidation in methane-rich sediments overlying the Blake Ridge gas hydrates. Proceeding of the Ocean Drilling Program, Scientific Results, 164: 87–99.

Brady, R., B. Wernicke, M.K. McNutt, J.C. Mutter, and G. Correa. 2000. Results of the Basin and Range Geoscientific Experiment (BARGE): A marine-style seismic reflection survey across the eastern boundary of the central Basin and Range province. Geochemistry, Geophysics, Geosystems: G3, 1.

Brewer, P.G. 2000. Chemical oceanography. Introduction to Earth systems: Processes and issues: 182–193.

Brewer, P.G. 2000. Gas hydrates and global climate change. Gas hydrates: Challenges for the future, 912: 195–199.

Brewer, P.G. 2000. Major international programs in Ocean Sciences: Ocean chemistry. 50 years of ocean discovery, 1950–2000: 152–161.

Brewer, P.G., and F.M. Orr Jr. 2000. CO2: The burning issue. Chemistry & Industry: 567–571.

Brewer, P.G., E.T. Peltzer, G. Friederich, I. Aya, and K. Yamane. 2000. Experiments on the ocean sequestration of fossil fuel CO2: pH measurements and hydrate formation. Marine Chemistry, 72: 83–93. https://doi.org/10.1016/S0304-4203(00)00074-8

Buck, K.R., J.P. Barry, and A.G.B. Simpson. 2000. Monterey Bay cold seep biota: Euglenozoa with chemoautotrophic bacterial epibionts. European Journal of Phycology, 36: 117–126.

Caress, D.W., and D.N. Chayes. 2000. MB-system version 4.6.10. Open source software distributed from the MBARI and L-DEO web sites MBARI, 2000.

Carlson, C.A., D.A. Hansell, E.T. Peltzer, and W.O. Smith Jr. 2000. Stocks and dynamics of dissolved and particulate organic matter in the southern Ross Sea, Antarctica. Deep-Sea Research II, 47: 3201–3225. http://dx.doi.org/10.1016/S0967-0645(00)00065-5

Chavez, F.P., and C.A. Collins. 2000. Corrigendum to "Studies of the California Current System Part 2"; [Deep-Sea Research II, 47 (5–6), 2000]. Deep Sea Research Part II: Topical Studies in Oceanography, 47: 1.

Chavez, F.P., and C.A. Collins. 2000. Studies of the California current system part 2. Deep-Sea Research II, 47: 5–6.

Chavez, F.P., and C.A. Collins. 2000. Studies of the California current system: Present, past and future. Deep-Sea Research II, 47: 761–763.

Clague, D.A., A.S. Davis, J.L. Bischoff, J.E. Dixon, and R. Geyer. 2000. Lava bubble-wall fragments formed by submarine hydrovolcanic explosions on Lo'ihi Seamount and Kilauea Volcano. Bulletin of Volcanology, 61: 437–449.

Clague, D.A., and J.E. Dixon. 2000. Extrinsic controls on the evolution of Hawaiian ocean island volcanoes. Geochemistry, Geophysics, Geosystems: G3, 1: 1010. http://dx.doi.org/10.1029/1999GC000023

Clague, D.A., J.R. Reynolds, and A.S. Davis. 2000. Near-ridge seamount chains in the northeastern Pacific Ocean. Journal of Geophysical Research, 105: 16541–16561. http://dx.doi.org/10.1029/2000JB900082

Davis, A.S., and D.A. Clague. 2000. President Jackson Seamounts, northern Gorda Ridge: Tectonomagmatic relationship between on- and off-axis volcanism. Journal of Geophysical Research, 105: 27939–27956. http://dx.doi.org/10.1029/2000jb900291

Davis, D.L. 2000. A data compression and sampling methodology for ocean observing systems. Oceans 2000: 1219–1225.

Dawson, S.C., E.F. DeLong, and N.R. Pace. 2000. Phylogenetic and ecological perspectives on uncultured Crenarchaeota and Korarchaeota.

De Grasse, T., N. McNutt, M. Kemper, B. Clinton, and H.R. Clinton. 2000. Exploration under the sea, beyond the stars. Millennium evenings at the White House.

Di Meo, C.A., A.E. Wilber, W.E. Holben, R.A. Feldman, R.C. Vrijenhoek, and S.C. Cary. 2000. Genetic variation among endosymbionts of widely distributed vestimentiferan tubeworms. Applied and Environmental Microbiology, 66: 651–658.

Dickens, G.R., and C.K. Paull. 2000. Technical appendix: Status of the Isothermal Decompression Analysis System (IDAS). Proceedings of the Ocean Drilling Program, Scientific Results, 164: 437–438.

Dickens, G.R., Borowski, W.S., Wehner, H., Paull, C.K., and ODP Leg 164 Scientific Party. 2000. Data report: Additional shipboard information for the pressure core sampler (PCS) at sites 994, 995, 996, and 997, Data Report. Proceeding of the Ocean Drilling Program, Scientific Results, 164: 439–443.

Dickens, G.R., P.J. Wallace, C.K. Paull, and W.S. Borowski. 2000. Detection of methane gas hydrate in the pressure core sampler (PCS): Volume-pressure-time relations during controlled degassing experiments. Proceedings of the Ocean Drilling Program, Scientific Results, 164: 113–126.

DiTullio, G.R., J. Grebmeier, K.R. Arrigo, M.P. Lizotte, D.H. Robinson, A. Leventer, J.P. Barry, M. VanWoert, and R.B. Dunbar. 2000. Rapid and early export of Phaeocystis antarctica blooms in the Ross Sea, Antarctica. Nature, 404: 595–598. http://dx.doi.org/10.1038/35007061

Ducklow, H.W., M.L. Dickson, D.L. Kirchman, G. Steward, J. Orchardo, J. Marra, and F. Azam. 2000. Constraining bacterial production, conversion efficiency and respiration in the Ross Sea, Antarctica, January-February, 1997. Deep-Sea Research II, 47: 3227–3247. http://dx.doi.org/10.1016/S0967-0645(00)00066-7

Dunbar, R.B., K. Arrigo, J.P. Barry, D. Bromwich, J. Ditullio, J. Grebmeier, A. Leventer, M. Lizotte, D. Robinson, and M.V. Woert. 2000. Interannual variability of the Ross Sea Polynya ecosystem: Climatic forcing of polar primary and export productio. EOS, Transactions of the American Geophysical Union.

Dunbar, R.B., K. Arrigo, J.P. Barry, D. Bromwich, J. Ditullio, J. Grebmeier, L. Langone, A. Leventer, M. Lizotte, D. Robinson, and M.V. Woert. 2000. Interannual variability of production and C export in the Ross Sea Polyny. JGOFS symposium.

Eichhubl, P., and J.R. Boles. 2000. Rates of fluid flow in fault systems–evidence for episodic fluid flow in the Miocene Monterey Formation, coastal California. American Journal of Science, 300: 571–600. http://dx.doi.org/10.2475/ajs.300.7.571

Eichhubl, P., H.G. Greene, T.H. Naehr, and N. Maher. 2000. Structural control of fluid flow: Offshore fluid seepage in the Santa Barbara Basin, California. Journal of Geochemical Exploration, 69–70: 545–549. http://dx.doi.org/10.1016/S0375-6742(00)00107-2

Fitzwater, S.E., K.S. Johnson, R.M. Gordon, K.H. Coale, and W.O. Smith Jr. 2000. Trace metal concentrations in the Ross Sea and their relationship with nutrients and phytoplankton growth. Deep-Sea Research II, 47: 3159–3179. http://dx.doi.org/10.1016/S0967-0645(00)00063-1

Frey, F.A., D.A. Clague, J.J. Mahoney, and J.M. Sinton. 2000. Volcanism at the edge of the Hawaiian plume: Petrogenesis of submarine alkalic lavas from the North Arch Volcanic Field. Journal of Petrology, 41: 667–691. http://dx.doi.org/10.1093/petrology/41.5.667

Garrison, D.L., M.M. Gowing, M.P. Hughes, L. Campbell, D.A. Caron, M.R. Dennett, A. Shalapyonok, R.J. Olson, M.R. Landry, S.L. Brown, H.B. Liu, F. Azam, G.F. Steward, H.W. Ducklow, and D.C. Smith. 2000. Microbial food web structure in the Arabian Sea: a US JGOFS study. Deep-Sea Research II, 47: 1387–1422. http://dx.doi.org/10.1016/S0967-0645(99)00148-4

Gebruk, A.V., P. Chevaldonné, T. Shank, R.A. Lutz, and R.C. Vrijenhoek. 2000. Deep-sea hydrothermal vent communities of the Logatchev area (14°45'N, Mid-Atlantic Ridge): Diverse biotypes and high biomass. Journal of the Marine Biological Association of the United Kingdom, 80: 383–393.

Goyet, C., R. Healy, and J.P. Ryan. 2000. Global distribution of total inorganic carbon and total alkalinity below the deepest winter mixed layer depths: 40.

Greene, H.G., M.M. Yoklavich, V.W. O'Connell, W.W. Wakefield, Brylinsky, and G.M. Cailliet. 2000. Mapping and classification of deep seafloor habitats. ICES CM 2000/T:08: 10.

Harris, R.N., G. Garven, J. Georgen, M.K. McNutt, L. Christiansen, and R.P. Von Herzen. 2000. Submarine hyrdogeology of the Hawaiian archipelagic apron: Part 2, Numerical simulations of coupled heat transport and fluid flow. Journal of Geophysical Research, 105: 371–386.

Harris, R.N., R.P. Von Herzen, M.K. McNutt, G. Garven, and K. Jordahl. 2000. Submarine hydrogeology of the Hawaiian archipelagic apron: Part 1, Heat flow patterns north of Oahu and Maro Reef. Journal of Geophysical Research, 105: 353–369.

Hatcher, G.A., Jr., and N. Maher. 2000. Real-time GIS for marine applications [Monograph] Marine and coastal geographical information systems.

Hinrichs, K.U., R.E. Summons, V. Orphan, S.P. Sylva, and J.M. Hayes. 2000. Molecular and isotopic analysis of anaerobic methane-oxidizing communities in marine sediments. Organic Geochemistry, 31: 1685–1701. http://dx.doi.org/10.1016/S0146-6380(00)00106-6

Hoehler, T.M., W.S. Borowski, M.J. Alperin, N.M. Rodriguez, and C.K. Paull. 2000. Model, stable isotope, andn radiotracer characterization of anaerobic methane oxidation in gas hydrate-bearing sediments of the Blake Ridge. Proceedings of the Ocean Drilling Program, Scientific Results, 164: 79–85.

Holder, G.D., and P.R. Bishnoi. Edited by C.W. Bryer, J.P. Monfort, Y.H. Mori, P.K. Notz, C.K. Paull, J. Ripmeester, E.D. Sloan, P.S. Somasundaran, M.H. Youssif, and R. Warinski. 2000. Gas Hydrates: Challenges for the Future, 912: 1044.

Hunt, J.C., and B.A. Seibel. 2000. Life history of Gonatus onyx (Cephalopoda: Teuthoidea): ontogenetic changes in habitat, behavior and physiology. Marine Biology, 136: 543–552. http://dx.doi.org/10.1007/s002270050714

Hunt, J.C., L.D. Zeidberg, W.M. Hamner, and B.H. Robison. 2000. The behaviour of Loligo opalescens (Mollusca: Cephalopoda) as observed by a remotely operated vehicle (ROV). Journal of the Marine Biological Association of the United Kingdom, 80: 873–883.

Johnson, K.S., and R. Byrne. 2000. Modern autonomous observing systems. Ocean Carbon Transport, Exchanges and Transformations, Proceedings of a Workshop: 41–55.

Johnson, K.S., V.A. Elrod, J.L. Nowicki, K.H. Coale, and H. Zamzow. 2000. Continuous flow techniques for on site and in situ measurements of metals and nutrients in sea water. In situ monitoring of aquatic systems: Chemical analysis and speciation: 223–252.

Kastens, K., E. Bonatti, D. Caress, G. Carrara, O. Dauteuil, G. Frueh-Green, and M. Ligi. 2000. The Vema transverse ridge (Central Atlantic). Marine Geophysical Researches: 20: 533–556.

Kastner, M., B. Carson, D.B. Bartlett, J. Jaeger, K. Bidle, and H. Jannasch. 2000. An in situ experiment of methane sewquestration as gas hydrate, authigenic carbonate, and loss to the water column and/or atmosphere. Gas Hydrates: Challenges for the Future: 32–37.

Kirkwood, W.J. 2000. Tiburon: MBARI's New ROV Integrated to a SWATH R/V. Sea Technology, 41: 51–55.