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2002

DeLong, E.F. 2002. Microbial population genomics and ecology. Current Opinion in Microbiololgy, 5: 520–524.

DeLong, E.F. 2002. Mille milliards de mille microbes. La Recherche, 355: 54–57.

DeLong, E.F. 2002. Towards microbial systems science: integrating microbial perspectives, from genomes to biomes. Environmental Microbiology, 4: 9–10.

DeLong, E.F., and P. Chandler. 2002. Power from the sea. Nature Biotech, 20: 788–789.

Dierssen, H.M., R.C. Smith, and M. Vernet. 2002. Glacial meltwater dynamics in coastal waters west of the Antarctic Peninsula. Proceedings of the National Academy of Science, 99: 1790–1795.

Drazen, J.C. 2002. A seasonal analysis of the nutritional condition of deep-sea macrourid fishes in the north-east Pacific. Journal of Fish Biology, 60: 1280–1295. http://dx.doi.org/10.1006/jfbi.2002.1943

Eastman, J.T., and J.P. Barry. 2002. Underwater video observation of the Antarctic toothfish, Dissostichus mawsoni (Perciformes: Nototheniidae) in the Ross Sea, Antarctica. Polar Biology, 25: 391–395.

Edgington, D.R., and D. Walther. 2002. Detection of visual events in underwater video using a neuromorphic saliency-based attention system. Neuromorphic Engineering Workshop 2002: 25–29.

Eichhubl, P., H.G. Greene, and N. Maher. 2002. Physiography of an active transpressive margin basin: high-resolution bathymetry of the Santa Barbara basin, Southern California continental borderland. Marine Geology, 184: 95–120.

Friederich, G.E., P.M. Walz, M.G. Burczynski, and F.P. Chavez. 2002. Inorganic carbon in the central California upwelling system during the 1997–1999 El Niño - La Niña event. Progress in Oceanography, 54: 185–203. http://dx.doi.org/10.1016/S0079-6611(02)00049-6

Girguis, P.R., J.J. Childress, J.A. Freytag, K.A. Klose, and R. Stuber. 2002. Effects of metabolite uptake on proton-equivalent elimination by two species of deep-sea vestimentiferan tubeworm, Riftia pachyptila and Lamellibrachia cf luymesi. Journal of Experimental Biology, 205: 3055–3066.

Goffredi, S.K., and J.P. Barry. 2002. Energy acquisition in vesicomyid symbioses. Cahiers Biologie Marine, 43: 345–350.

Goffredi, S.K., and J.P. Barry. 2002. Species-specific variation in sulfide physiology between closely related vesicomyid clams. Marine Ecology Progress Series, 225: 227–238. http://dx.doi.org/10.3354/meps225227

Greene, H.G., N. Maher, and C.K. Paull. 2002. Physiography of the Monterey Bay National Marine Sanctuary and implications about continental margin development. Marine Geology, 181: 55–62. http://dx.doi.org/10.1016/S0025-3227(01)00261-4

Guinot, D., L.A. Hurtado, and R.C. Vrijenhoek. 2002. New genus and species of brachyuran crab from the southern East Pacific Rise (Crustacea Decapoda Brachyura Bythograeidae). Comptes Rendus Biologies, 325: 1119–1128.

Hopcroft, R.R., C. Clark, and F.P. Chavez. 2002. Copepod communities in Monterey Bay during the 1997 to 1999 EL Niño and La Nina. Progress in Oceanography, 54: 251–264.

Hurtado, L.A., M. Mateos, R.A. Lutz, and R.C. Vrijenhoek. 2002. Molecular evidence for multiple species of Oasisia (Annelida: Siboglinidae) at eastern Pacific hydrothermal vents. Cahiers de Biologie Marine, 34: 377–380.

Jahnke, R., L. Atkinson, J. Barth, F.P. Chavez, K. Daly, J. Edson, P. Franks, J. O'Donnell, and O. Schofield. 2002. Coastal ocean processes and observatories: Advancing coastal research.. Coastal Ocean Report 8, TR-02-01: 51.

Johnson, K.S., and D.M. Karl. 2002. Is ocean fertilization credible and creditable?. Science, 296: 467.

Johnson, K.S., and L.J. Coletti. 2002. In situ ultraviolet spectrophotometry for high resolution and long-term monitoring of nitrate, bromide and bisulfide in the ocean. Deep-Sea Research Part I, 49: 1291–1305. http://dx.doi.org/10.1016/S0967-0637(02)00020-1

Kauahikaua, J., K.V. Cashman, D.A. Clague, D. Champion, and J.T. Hagstrum. 2002. Emplacement of the most recent lava flows on Hualalai Volcano, Hawai'i. Bulletin of Volcanology, 64: 229–253. http://dx.doi.org/10.1007/s00445-001-0196-8

Kindle, J.C., R. Hodur, S. deRada, J. Paduan, L.K. Rosenfeld, and F.P. Chavez. 2002. A COAMPSTM reanalysis for the eastern Pacific: Properties of the diurnal sea breeze along the central California coast. Geophysical Research Letters, 29: 2203.

Malkiel, E., J. Abras, E.A. Widder, and J. Katz. 2002. Submersible holography for zooplankton research. 3rd Zooplankton Production Symposium.

Marinovic, B., D.A. Croll, N. Gong, S. Benson, and F.P. Chavez. 2002. Effects of the 1997–98 El Niño on zooplankton within the Monterey Bay coastal upwelling system with emphasis on the euphausiid community. Progress in Oceanography, 54: 265–277.

Mateos, M., and R.C. Vrijenhoek. 2002. Ancient versus reticulate origin of a hemiclonal lineage. Evolution, 56: 985–992.

Mateos, M., O.I. Sanjur, and R.C. Vrijenhoek. 2002. Historical biogeography of the livebearing fish genus Poeciliopsis (Poeciliidae: Cyprinodontiformes). Evolution, 56: 972–984.

Matsumoto, G.I., G.L. Crow, P.F.S. Cornelius, and B.A. Carlson. 2002. Discovery of the cubomedusa Carybdea sivickisi (Cubozoa: Carybdeidae) in the Hawaiian Islands. Bishop Museum Occasional Papers Records of the Hawaii Biological Survey for 2000 Part 2, 69: 44–46.

McBride, L.R. 2002. Prototyping with fine pitch and BGA SMT in oceanic engineering. MTS/IEEE Oceans 2002: 1741–1746.

McCann, M.P. 2002. Creating 3-D oceanographic data visualizations for the web. Proceedings of the Seventh International Conference on Web3D Technology: 24–28.

Montagner, J.P., J.F. Karczewski, E. Stutzmann, G. Roult, W. Crawford, P. Lognonne, L Beguery, S. Cacho, J.C. Koenig, J. Savary, B. Romanowicz, and D.S. Stakes. 2002. Geophysical ocean bottom observatories or temporary portable networks?. Science-technology synergy for research in marine environment: Challenges for the XXI century: 59–81.

Moore, J.G., and D.A. Clague. 2002. Mapping the Nuuanu and Wailau landslides. Hawaiian Volcanoes: Deep Underwater Perspectives, 128: 223–244.

Nelson, D.M., R.F. Anderson, R.T. Barber, M.A. Brzezinski, K.O. Buesseler, Z. Chase, R.W. Collier, M.L. Dickson, R. François, M. Hiscock, S. Honjo, J. Marra, W.R. Martin, R.N. Sambrotto, F.L. Sayles, and D.E. Sigmon. 2002. Vertical budgets for organic carbon and biogenic silica in the Pacific sector of the Southern Ocean 1996–1998. Deep-Sea Research II, 49: 1645–1673. http://dx.doi.org/10.1016/S0967-0645(02)00005-X

Orange, D.L., J. Yun, N. Maher, J.P. Barry, and H.G. Greene. 2002. Tracking California seafloor seeps with bathymetry, backscatter and ROVs. Continental Shelf Research, 22: 2273–2290. http://dx.doi.org/10.1016/S0278-4343(02)00054-7

Orphan, V.J., C.H. House, K.U. Hinrichs, K.D. McKeegan, and E.F. DeLong. 2002. Multiple archaeal groups mediate methane oxidation in anoxic cold seep sediments. Proceedings of the National Academy of Science, 99: 7663–7668.

Paull, C.K. 2002. Continental margin gas hydrate: Slope stability, geo-hazard, and climate connections; Onshore-offshore relationships on the Nordic Atlantic margin. Proceedings of the Norwegian Geological Society, 2: 158–161.

Paull, C.K., P.G. Brewer, W. Ussler, III, E.T. Peltzer, G. Rehder, and D.A. Clague. 2002. Evaluation of marine slumping as a mechanism to transfer methane from seafloor gas hydrate deposits into the upper ocean and atmosphere. Proceedings of the Fourth International Conference on Gas Hydrates, 1: 31–35.

Peltzer, E.T., P.G. Brewer, R.M. Dunk, J. Erickson, G. Rehder, and P.M. Walz. 2002. Recent advances in deep-sea CO2 sequestration experiments. American Chemical Society Fuel Chemistry Division Preprints, 47: 23–24.

Peperzak, L., B. Sandee, C. Scholin, P. Miller, and L. Van Nieuwerburgh. 2002. Application and flow cytometric detection of antibody and rRNA probes to Gymnodinium mikimotoi (Dinophyceae) and Pseudo-nitzschia multiseries (Bacillariophyceae). Harmful Algal Blooms 2000: 206–209.

Pernthaler, A., C.M. Preston, J. Pernthaler, E.F. DeLong, and R. Amann. 2002. Comparison of fluorescently labeled oligonucleotide and polynucleotide probes for the detection of pelagic marine bacteria and archaea. Applied and Environmental Microbiology, 68: 661–667.

Price, J., and D.A. Clague. 2002. How old is the Hawaiian biota? Geology and phylogeny suggest recent divergence. Proceedings of the Royal Society of London, Series B, Biological Sciences, 269: 2429–2435.

Raskoff, K.A. 2002. Foraging, prey capture, and gut contents of the mesopelagic narcomedusa Solmissus spp. (Cnidaria: Hydrozoa). Marine Biology, 141: 1099–1107.

Rehder, G., P.G. Brewer, E.T. Peltzer, and G.E. Friederich. 2002. Enhanced lifetime of methane bubble streams within the deep ocean. Geophysical Research Letters, 29: 21-1–21-4. http://dx.doi.org/10.1029/2001gl013966

Reznick, D.N., M. Mateos, and M.S. Springer. 2002. Independent origins and rapid evolution of the placenta in the fish genus Poeciliopsis. Science, 298: 1018–1020. http://dx.doi.org/10.1126/science.1076018

Rhodes, L., C. Scholin, J. Tyrrell, J. Adamson , and K. Todd. 2002. The integration of DNA probes into New Zealand's routine phytoplankton monitoring programmes. Harmful Algal Blooms 2000: 429–432.

Robison, B.H. 2002. Submersibles in oceanographic research. Oceanographic History: the Pacific and Beyond. Proceedings of the Fifth International Congress on the History of Oceanography: 556.

Ryan, J.P., F.P. Chavez, J.G. Bellingham, E. Rienecker, R. Kudela, A. Vander Woude, R. Maffione, and A. Fischer. 2002. Environmental processes in the Monterey Bay National Marine Sanctuary: Studies integrating AVIRIS and synoptic in situ sensing. Proceedings of the Eleventh JPL Airborne Earth Science Workshop: 307–318.

Scholin, C.A., E. Vrieling, L. Peperzak, L. Rhodes, and P. Rublee. 2002. Detection of HAB species using lectin, antibody, and DNA probes. Manual on Harmful Marine Microalgae.

Schwarz, J.N., P. Kowalczuk, S. Kaczmarek, G.F. Cota, B.G. Mitchell, M. Kahru, F.P. Chavez, A. Cunningham, D. McKee, P. Gege, M. Kishino, D.A. Phinney, and R. Raine. 2002. Two models for absorption by coloured dissolved organic matter (CDOM). Oceanologia, 44: 209–241.

Sharp, J.H., C.A. Carlson, E.T. Peltzer, D.M. Castle-Ward, K.B. Savidge, and K.R. Rinker. 2002. Final dissolved organic carbon broad community intercalibration and preliminary use of DOC reference materials. Marine Chemistry, 77(4): 239–253. http://dx.doi.org/10.1016/S0304-4203(02)00002-6

Sibenac, M., W.J. Kirkwood, R. McEwen, F. Shane, R. Henthorn, D. Gashler, and H. Thomas. 2002. Modular AUV for routine deep water science operations. MTS/IEEE Oceans 2002: 167–172.

Stakes, D.S., B. Romanowicz, M. Begnaud, K.C. McNally, J.P. Montagner, E. Stutzman, and M. Pasyanos. 2002. The MBARI margin seismology experiment. Science-Technology Synergy for Research in Marine Environment: Challenges for the XXI Century: 93–110.

Stratton, S., K. Brekke, C.K. Paull, M. Conway, C.T. Dawe, W. Ussler III, P. Mitts, and G.H. Greene. 2002. Development of an ROV deployed vibracoring system. Proceedings of Underwater Intervention 2002, N–1–3: 6.

Tervalon, N., and R. Henthorn. 2002. Ice profiling sonar for an AUV: Experience in the Arctic. MTS/IEEE Oceans 2002: 305–310.

Tyrrell, J.V., L.B. Connell, and C.A. Scholin. 2002. Monitoring for Heterosigma akashiwo using a sandwich hybridization assay. Harmful Algae, 1: 205–214.

Ussler III, W., C.K. Paull, P. McGill, D. Schroeder, and D. Ferrell. 2002. Estimating in situ sediment gas concentrations in ODP boreholes by continuously monitoring temperature during core recovery. Proceedings of the Fourth International Conference on Gas Hydrate, 1: 210–215.

Van Dover, C.L., C.R. German, K.G. Speer, L.M. Parson, and R.C. Vrijenhoek. 2002. Evolution and biogeography of deep-sea vent and seep invertebrates. Science, 295: 1253–1257. http://dx.doi.org/10.1126/science.1067361

White, S.N., A.D. Chave, G.T. Reynolds, and C.L. Van Dover. 2002. Ambient light emission from hydrothermal vents on the Mid-Atlantic Ridge. Geophysical Research Letters, 29: 1–4. http://dx.doi.org/10.1029/2002gl014977

Wirsen, C.O., S.M. Sievert, C.M. Cavanaugh, S.J. Molyneaux, A. Ahmad, L.T. Taylor, E.F. DeLong, and C.D. Taylor. 2002. Characterization of an autotrophic sulfide-oxidizing marine arcobacter sp. that produces filamentous sulfur. Applied and Environmental Microbiology, 68: 316–325. http://dx.doi.org/10.1128/Aem.68.1.316-325.2002

Won, Y.J., P.A.Y. Maas, C.L. Van Dover, and R.C. Vrijenhoek. 2002. Habitat reversal in vent and seep mussels: seep species, Bathymodiolus heckerae, derived from vent ancestors. Cahiers de Biologie Marine, 34: 387–390.

Zeidberg, L.D., and W.M. Hamner. 2002. Distribution of squid paralarvae, Loligo opalescens (Cephalopoda: Myopsida), in the Southern California Bight in the three years following the 1997–1998 El Niño. Marine Biology, 141: 111–122. http://dx.doi.org/10.1007/s00227-002-0813-x

2001

Barker, B.A.J., D.L. Davis, and G.P. Smith. 2001. The calibration of laser-referenced underwater cameras for quantitative assessment of marine resources. Marine Technology Society/Institue of Electrical and Electronics Engineers (MTS/EEE) Oceans 2001: An Ocean Odyssey: 1854–1859.

Béjà, O., E.N. Spudich, J.L. Spudich, M. Leclerc, and E.F. DeLong. 2001. Proteorhodopsin phototrophy in the ocean. Nature, 411: 786–789. http://dx.doi.org/10.1038/35081051

Bellingham, J.G., E. Cokelet, W.J. Kirkwood, N. Tervalon, H. Thomas, M. Sibenac, D. Gashler, R. McEwen, R. Henthorn, F. Shane, D.J. Osborne, K. Johnson, J. Overland, P. Stein, A. Bahlavouni, and D. Anderson. 2001. Field results for an Arctic AUV designed for characterizing circulation and ice thickness. American Geophysical Union.

Bernhard, J.M., K.R. Buck, and J.P. Barry. 2001. Monterey Bay cold-seep biota: Assemblages, abundance, and ultrastructure of living foraminifera. Deep Sea Research Part I: Oceanographic Research Papers, 48: 2233–2249. http://dx.doi.org/10.1016/S0967-0637(01)00017-6

Borowski, W.S., N. Cagatay, Y.G. Ternois, C.K. Paull, L.D. Keigwin, D. Rio, G.D. Acton, G.G. Bianchi, W.P. Chaisson, B.M. Clement, E. Cortijo, G.B. Dunbar, R.D. Flood, S.O. Franz, L. Giosan, J. Gruetzner, S. Hagen, B. Haskell, M.J. Horowitz, E.P. Laine, S.P. Lund, M. Okada, M.S. Poli, I. Raffi, M.K. Reuer, T. Williams, D.M. Winter, and M.E. Yokokawa. 2001. Carbon isotopic composition of dissolved CO2, CO2 gas, and methane, Blake-Bahama Ridge and Northeast Bermuda Rise, ODP Leg 172. Proceedings of the Ocean Drilling Program, Scientific Results.

Brewer, P.G., and T. Moore. 2001. Ocean sciences at the new millennium: 152.

Brown, M., M. Kelley, and P. McGill. 2001. MBARI Vertical Profiler. MTS/IEEE Oceans 2001: An Ocean Odyssey: 2482–2485.

Caress, D.W., and D.N. Chayes. 2001. MB-System version 5.0.beta12. Open source software distributed from the MBARI and L-Deo web sites.

Caress, D.W., and W. Kirkwood. 2001. High resolution mapping with AUVs: payload development issues in support of oceanographic science. AUV Sensor Workshop.

Case, J.F., P.J. Herring, B.H. Robison, S.H.D. Haddock, L.J. Kricka, and P.E. Stanley. 2001. Bioluminescence and Chemiluminescence 2000: 517.

Castro, C.G., F.P. Chavez, and C. Collins. 2001. The role of the California Undercurrent in the export of denitrified waters from the eastern tropical North Pacific. Global Biogeochemical Cycles, 21: 819–830. http://dx.doi.org/10.1029/2000gb001324

Chaffey, M., E. Mellinger, and W. Paul. 2001. Communications and power to the seafloor: MBARI's ocean observing system mooring concept. MTS/IEEE Oceans 2001: An Ocean Odyssey: 2473–2481.

Chase, Z., R. Anderson, and M.Q. Fleisher. 2001. Evidence from authigenic uranium for increased productivity of the glacial Subantarctic Ocean. Paleoceanography, 16: 468–478. http://dx.doi.org/10.1029/2000pa000542

Chave, A.D., H. Kirkham, A.R. Maffei, G. Massion, H. Frazier, A. Bradley, S.J. Gauder, W. Wilcock, D.H. Rodgers, P.M. Beauchamp, J.C. Madden, and B.M. Howe. 2001. The NEPTUNE Scientific Submarine Cable System. SubOptic 2001: The Fourth International Convention on Undersea Communications.

Chayes, D., N. Tervalon, and R. Anderson. 2001. Ice profiling sonars: A comparison of error budgets. MTS/IEEE Oceans 2001: An Ocean Odyssey: 1513–1522.

Clague, D.A., N. Maher, and C.K. Paull. 2001. High-resolution multibeam survey of Hydrate Ridge, offshore Oregon. Natural gas hydrate: Occurrence, distribution, and detection, 124: 297–303.

Clague, D.A., R. Zierenberg, A. Davis, S. Goffredi, J. McClain, N. Maher, E. Olsen, V. Orphan, S. Ross, and K. Von Damm. 2001. MBARI's 2000 expedition to the Gorda Ridge. RIDGE Events, 11: 5–12.

Cline, D., T.C. O'Reilly, T. Meese, B. Roman, and D. Edgington. 2001. The Environmental Sample Processor (ESP) software design: Software for detection and quantification of microorganisms. MTS/IEEE Oceans 2001: An Ocean Odyssey: 287–294.

Colbert, D., K.H. Coale, W.M. Berelson, and K.S. Johnson. 2001. Cadmium flux in Los Angeles/Long Beach Harbours and at sites along the California Continental Margin. Estuarine, Coastal and Shelf Science, 53: 169–180. http://dx.doi.org/10.1006/ecss.2001.0802

Connor, J.L. 2001. California's Living Marine Resources: A Status Report. Nearshore marine plant resources: Overview: 273.

Connor, J.L. 2001. Nearshore marine plant resources: Overview. California's Living Marine Resources: A Status Report: 273.

Cooper, K.M., M.R. Reid, M.T. Murrell, and D.A. Clague. 2001. Crystal and magma residence at Kilauea Volcano, Hawaii: 230Th-226Ra dating of the 1955 east rift eruption. Earth and Planetary Science Letters, 184: 703–718.

DeLong, E.F. 2001. A phylogenetic perspective on hyperthermophilic microorganisms. Methods in Enzymology, 330: 3–11.

DeLong, E.F. 2001. Microbial seascapes revisited. Current Opinion in Microbiology, 4: 290–295.

DeLong, E.F., and N.R. Pace. 2001. Environmental diversity of bacteria and archaea. Systematic Biology, 50: 470–478.

Dickey, T., S. Zedler, X. Yu, S.C. Doney, D. Frye, H. Jannasch, D. Manov, D. Sigurdson, J.D. McNeil, L. Dobeck, T. Gilboy, C. Bravo, D.A. Siegel, and N. Nelson. 2001. Physical and biogeochemical variability from hours to years at the Bermuda Testbed Mooring site: June 1994-March 1998. Deep-Sea Research II, 48: 2105–2140. http://dx.doi.org/10.1016/S0967-0645(00)00173-9

Dixon, J.E., and D.A. Clague. 2001. Volatiles in basaltic glasses from Loihi Seamount, Hawaii: Evidence for a relatively dry plume component. Journal of Petrology, 42: 627–654. http://dx.doi.org/10.1093/petrology/42.3.627

Ducklow, H., C. Carlson, M. Church, D. Kirchman, D. Smith, and G. Steward. 2001. The seasonal development of the bacterioplankton bloom in the Ross Sea, Antarctica, 1994–1997. Deep Sea research II, 48: 4199–4221. http://dx.doi.org/10.1016/S0967-0645(01)00086-8

Ducklow, H.W., D.C. Smith, L. Campbell, M.R. Landry, H.L. Quinby, G.F. Steward, and F. Azam. 2001. Heterotrophic bacterioplankton in the Arabian Sea: Basinwide response to year-round high primary productivity.. Deep-Sea Research II, 48: 1303–1323. http://dx.doi.org/10.1016/S0967-0645(00)00140-5

Dyer, A., K. Soole, and G.I. Matsumoto. 2001. Quantitative TaqMan PCR without a real-time thermal cycler: An assay for fish insulin-like growth factor I messenger RNA. Marine Biotechnology, 3: 16–21. http://dx.doi.org/10.1007/s101260000029

Edgington, D.R., T.C. O'Reilly, D. Davis, R. Henthorn, M.P. McCann, T. Meese, W. Radochonski, M. Risi, B. Roman, and R. Schramm. 2001. "Smart Network" infrastructure for the MBARI Ocean Observatory Observing System. MTS/IEEE Oceans 2001: An Ocean Odyssey: 1276–1282.