Evans, W., P. Strutton, and F.P. Chavez. 2009. Impact of tropical instability waves on nutrient and chlorophyll distributions in the equatorial Pacific. Deep-Sea Research Part I, 56: 178–188. http://dx.doi.org/10.1016/j.dsr.2008.08.008
Gutierrez, D., A. Sifeddine, D.B. Field, L. Ortlieb, G. Vargas, F.P. Chavez, F. Velazco, V. Ferreira, P. Tapia, R. Salvatteci, H. Boucher, M.C. Morales, J. Valdes, J.L. Reyss, A. Campusano, M. Boussafir, M. Mandeng-Yogo, M. Garcia, and T. Baumgartner. 2009. Rapid reorganization in ocean biogeochemistry off Peru towards the end of the little ice age. Biogeosciences, 6: 835–848.
Haley, P.J., Jr., P.F.J. Lermusiaux, A.R. Robinson, W. Leslie, O. Logoutov, G. Cossarini, X.S. Liang, P. Moreno, S.R. Ramp, J. Doyle, J.G. Bellingham, F.P. Chavez, and S. Johnston. 2009. Forecasting and reanalysis in the Monterey Bay/California current region for the Autonomous Ocean Sampling Network-II experiment. Deep-Sea Research Part II, 56: 127–148. http://dx.doi.org/10.1016/j.dsr2.2008.08.010
Johnston, T.M.S., O.M. Cheriton, J.T. Pennington, and F.P. Chavez. 2009. Thin phytoplankton layer formation at eddies, filaments, and fronts in a coastal upwelling zone. Deep-Sea Research Part II, 56: 246–259. http://dx.doi.org/10.1016/j.dsr2.2008.08.006
Leinweber, A., N. Gruber, H. Frenzel, G.E. Friederich, and F.P. Chavez. 2009. Diurnal carbon cycling in the surface ocean and lower atmosphere of Santa Monica Bay, California. Geophysical Research Letters, 36: 1–5. http://dx.doi.org/10.1029/2008GL037018
Messié, M., J. Ledesma, D.D. Kolber, R.P. Michisaki, D.G. Foley, and F.P. Chavez. 2009. Potential new production estimates in four eastern boundary upwelling ecosystems. Progress in Oceanography, 83: 151–158.
Quinones, R.A., M.H. Gutierrez, G. Daneri, D. Gutierrez, H.E. Gonzalez, and F.P. Chavez. 2009. The Humboldt Current system. Carbon and Nutrient Fluxes in Continental Margins: 44–64.
Ramp, S.R., R.E. Davis, N.E. Leonard, I. Shulman, Y. Chao, A.R. Robinson, J. Marsden, P.F.J. Lermusiaux, D.M. Fratantoni, J.D. Paduan, F.P. Chavez, F.L. Bahr, X.S. Liang, W. Leslie, and Z. Li. 2009. Preparing to predict: The second Autonomous Ocean Sampling Network (AOSN-II) experiment in the Monterey Bay. Deep-Sea Research Part II, 56: 68–86. http://dx.doi.org/10.1016/j.dsr2.2008.08.013
Ryan, J., A. Fischer, R.M. Kudela, J.F.R. Gower, S.A. King, R. Marin III, and F.P. Chavez. 2009. Influences of upwelling and downwelling winds on red tide bloom dynamics in Monterey Bay, California. Continental Shelf Research, 29: 785–795. http://dx.doi.org/10.1016/j.csr.2008.11.006
Shadden, S.C., F. Lekien, J.D. Paduan, F.P. Chavez, and J. Marsden. 2009. The correlation between surface drifters and coherent structures based on high-frequency radar data in Monterey Bay. Deep-Sea Research Part II, 56: 161–172. http://dx.doi.org/10.1016/j.dsr2.2008.08.008
Shulman, I., C. Rowley, S. Anderson, S. DeRada, J. Kindle, P. Martin, J. Doyle, J. Cummings, S.R. Ramp, F.P. Chavez, D. Fratantoni, and R.E. Davis. 2009. Impact of glider data assimilation on the Monterey Bay model. Deep-Sea Research Part II, 56: 188–198. http://dx.doi.org/10.1016/j.dsr2.2008.08.003
Takahashi, T., S.C. Sutherland, R. Wanninkhof, C. Sweeney, R.A. Feely, D.W. Chipman, B. Hales, G.E. Friederich, F.P. Chavez, C. Sabine, A. Watson, D.C.E. Bakker, U. Schuster, N. Metzl, H. Yoshikawa-Inoue, M. Ishii, T. Midorikawa, Y. Nojiri, A. Kortzinger, T. Steinhoff, M. Hoppema, J. Olafsson, T.S. Arnarson, B. Tilbrook, T. Johannessen, A. Olsen, R. Bellerby, C.S. Wong, B. Delille, N.R. Bates, and H.J.W. de Baar. 2009. Climatological mean and decadal change in surface ocean pCO2, and net sea-air CO2 flux over the global oceans. Deep-Sea Research Part I, 56: 2075–2076.
Bertrand, A., F. Gerlotto, S. Bertrand, M. Gutiérrez, L. Alza, A. Chipollini, E. Diaz, P. Espinoza, L. Ledesma, R. Quesquén, S. Peraltilla, and F.P. Chavez. 2008. Schooling behaviour and environmental forcing in relation to anchoveta distribution: An analysis across multiple spatial scales. Progress in Oceanography, 79: 264–277. http://dx.doi.org/10.1016/j.pocean.2008.10.018
Bograd, S.J., C.G. Castro, E. Di Lorenzo, D.M. Palacios, H. Bailey, W. Gilly, and F.P. Chavez. 2008. Oxygen declines and the shoaling of the hypoxic boundary in the California Current. Geophysical Research Letters, 35: 1–6. http://dx.doi.org/10.1029/2008GL034185
Buck, K.R., F.P. Chavez, and A.S. Davis. 2008. Minidiscus trioculatus, a small diatom with a large presence in the upwelling systems of central California. Nova Hedwigia Beiheft, 133: 1–6.
Carr, S.D., X.J. Capet, J.C. McWilliams, J.T. Pennington, and F.P. Chavez. 2008. The influence of diel vertical migration on zooplankton transport and recruitment in an upwelling region: Estimates from a coupled behavioral-physical model. Fisheries Oceanography, 17: 1–15. http://dx.doi.org/10.1111/j.1365-2419.2007.00447.x
Chavez, F.P., A. Bertrand, R. Guevara, P. Soler, and J. Csirke. 2008. The northern Humboldt Current System: Brief history, present status and a view towards the future. Progress in Oceanography, 79: 95–105. http://dx.doi.org/10.1016/j.pocean.2008.10.012
Freon, P., C. Werner, and F.P. Chavez. 2008. Conjectures on the influence of climate change on ocean ecosystems dominated by small pelagic fish. Climate Change and Small Pelagic Fish: 312–343.
Friederich, G.E., J. Ledesma, O. Ulloa, and F.P. Chavez. 2008. Air-sea carbon dioxide fluxes in the coastal southeastern tropical Pacific. Progress in Oceanography, 79: 156–166. http://dx.doi.org/10.1016/j.pocean.2008.10.001
Rienecker, E.R., J.P. Ryan, R. Marin III, M. Blum, C. Dietz, and F.P. Chavez. 2008. Synoptic mapping of the phytoplankton size distribution, with applications to the ecology of red tides and harmful algal blooms. Limnology and Oceanography: Methods, 6: 153–161.
Ryan, J.P., J.F.R. Gower, S.A. King, W.P. Bissett, A.M. Fischer, R.M. Kudela, Z. Kolber, F. Mazzillo, E.R. Rienecker, and F.P. Chavez. 2008. A coastal ocean extreme bloom incubator. Geophysical Research Letters, 35. http://dx.doi.org/10.1029/2008GL034081
Ryan, J.P., M.A. McManus, J.D. Paduan, and F.P. Chavez. 2008. Phytoplankton thin layers within coastal upwelling system fronts. Marine Ecology Progress Series, 354: 21–34.
Saba, V., J. Spotila, F.P. Chavez, and J. Musick. 2008. Bottom-up and climate forcing on the worldwide populations of leatherback turtles. Ecology, 89: 1414–1427.
Strutton, P.G., W. Evans, and F.P. Chavez. 2008. Equatorial Pacific chemical and biological variability, 1997–2003. Global Biogeochemical Cycles, 22. http://dx.doi.org/10.1029/2007GB003045
Chai, F., M.S. Jiang, Y. Chao, R.C. Dugdale, F.P. Chavez, and R.T. Barber. 2007. Modeling responses of diatom productivity and biogenic silica export to iron enrichment in the equatorial Pacific Ocean. Global Biogeochemical Cycles, 21: 1–16. http://dx.doi.org/10.1029/2006GB002804
Chavez, F.P., T. Takahashi, W.J. Cai, G.E. Friederich, B. Hales, R. Wanninkhof, and R.A. Feely. 2007. Coastal Oceans, Lakes, and Rivers. The First State of the Carbon Cycle Report (SOCCR): The North American carbon budget and implications for the global carbon cycle: 157–166.
Pennington, J.T., R. Michisaki, D. Johnston, and F.P. Chavez. 2007. Ocean observing in the Monterey Bay National Marine Sanctuary: CalCOFI and the MBARI time series: 24.
Shulman, I., J. Kindle, P. Martin, S. deRada, J. Doyle, B. Penta, S. Anderson, F.P. Chavez, J. Paduan, and S.R. Ramp. 2007. Modeling of upwelling/relaxation events with the Navy Coastal Ocean Model. Journal of Geophysical Research, 112: 1–12. http://dx.doi.org/10.1029/2006JC003946
Wankel, S.D., C. Kendall, J.T. Pennington, F.P. Chavez, and A. Paytan. 2007. Nitrification in the euphotic zone as evidenced by nitrate dual isotopic composition: Observations from Monterey Bay, California. Global Biogeochemical Cycles, 21: 1–13. http://dx.doi.org/10.1029/2006GB002723
Behrenfeld, M.J., K. Worthington, R.M. Sherrell, F.P. Chavez, P. Strutton, M. McPhaden, and D.M. Shea. 2006. Controls on tropical Pacific Ocean productivity revealed through nutrient stress diagnostics. Nature, 442: 1025–1028. http://dx.doi.org/10.1038/nature05083
Field, D., D. Cayan, and F.P. Chavez. 2006. Secular warming in the California Current and North Pacific. California Cooperative Oceanic Fisheries Investigations Reports, 47: 92–108.
Johnson, K.S., L.J. Coletti, and F.P. Chavez. 2006. Diel nitrate cycles observed with in situ sensors predict monthly and annual new production. Deep-Sea Research Part I, 53: 561–573. http://dx.doi.org/10.1016/j.dsr.2005.12.004
Lucier, A., M. Palmer, H. Mooney, K. Nadelhoffer, D. Ojima, and F.P. Chavez. 2006. Ecosystems and Climate Change: Research Priorities for the U.S. Climate Change Science Program. Recommendations from the Scientific Community: 50.
Pennington, J.T., K.L. Mahoney, V.S. Kuwahara, D.D. Kolber, R. Calienes, and F.P. Chavez. 2006. Primary production in the eastern tropical Pacific: A review. Progress in Oceanography, 69: 285–317. http://dx.doi.org/10.1016/j.pocean.2006.03.012
Peterson, B., R. Emmett, R. Goericke, E. Venrick, A. Mantyla, S.J. Bograd, F.B. Schwing, R. Hewitt, N. Lo, W. Watson, J. Barlow, M. Lowry, C. Reiss, S. Ralston, K.A. Forney, S. Benson, B.E. Lavaniegos, W.J. Sydeman, D. Hyrenbach, R.W. Bradley, P. Warzybok, F.P. Chavez, K. Hunter, M. Weise, and J. Harvey. 2006. The state of the California Current, 2005–2006: Warm in the north, cool in the south. California Cooperative Oceanic Fisheries Investigations Report, 47: 30–74.
Ryan, J.P., I. Ueki, Y. Chao, H. Zhang, P.S. Polito, and F.P. Chavez. 2006. Western pacific modulation of large phytoplankton blooms in the central and eastern equatorial Pacific. Journal of Geophysical Research, 111: 1–14. http://dx.doi.org/10.1029/2005JG000084
Buck, K.R., R. Marin III, and F.P. Chavez. 2005. Heterotrophic dinoflagellate fecal pellet production: Grazing of large, chain-forming diatoms during upwelling events in Monterey Bay, California. Aquatic Microbial Ecology, 40: 293–298. http://dx.doi.org/10.3354/ame040293
Chavez, F.P. 2005. Biological consequences of interannual to multidecadal variability. In the Sea V.13: 643–679.
Croll, D.A., B. Marinovic, S. Benson, F.P. Chavez, N. Black, R. Ternullo, and B.R. Tershy. 2005. From wind to whales: Trophic links in a coastal upwelling system. Marine Ecology Progress Series, 289: 117–130. http://dx.doi.org/10.3354/meps289117
Goericke, R., E. Venrick, A. Mantyla, S.J. Bograd, F.B. Schwing, A. Huyer, R.L. Smith, P.A. Wheeler, R. Hooff, W.T. Peterson, F.P. Chavez, C. Collins, B. Marinovic, N. Lo, G. Gaxiola-Castro, R. Durazo, K.D. Hyrenbach, and W.J. Sydeman. 2005. The State of California Current, 2004–2005: Still cool? California Cooperative Oceanic Fisheries Investigations Reports, 46: 32–72.
Gomes, K., F.P. Chavez, and J. Graybeal. 2005. From raw data to observing products with SSDS: Fishes to Wishes. Proceedings of the Marine Technology Society / Institute of Electrical and Electronics Engineers Oceans Conference.
Graybeal, J., J.G. Bellingham, and F.P. Chavez. 2005. Data systems for ocean observation programs. Sea Technology, 46.
Hendricks, M.B., M.L. Bender, B.A. Barnett, P. Strutton, and F.P. Chavez. 2005. The triple oxygen isotope composition of dissolved O2 in the equatorial Pacific: A tracer of mixing, production, and respiration. Journal of Geophysical Research, 110: C12021. http://dx.doi.org/10.1029/2004JC002735
Ramp, S.R., J.D. Paduan, I. Shulman, J. Kindle, F.L. Bahr, and F.P. Chavez. 2005. Observations of upwelling and relaxation events in the northern Monterey Bay during August 2000. Journal of Geophysical Research, 110: C07013. http://dx.doi.org/10.1029/2004JC002538
Ryan, J.P., F.P. Chavez, and J.G. Bellingham. 2005. Physical-biological coupling in Monterey Bay, California: Topographic influences on phytoplankton ecology. Marine Ecology Progress Series, 287: 23–32. http://dx.doi.org/10.3354/meps287023
Ryan, J.P., H.M. Dierssen, R.M. Kudela, C.A. Scholin, K.S. Johnson, J.M. Sullivan, A.M. Fischer, E.V. Rienecker, P.R. McEnaney, and F.P. Chavez. 2005. Coastal ocean physics and red tides: An example from Monterey Bay, California. Oceanography, 18: 246–255.
Chavez, F.P., J.T. Pennington, R. Michisaki, and J.P. Ryan. 2004. The Monterey Bay Ocean Time-Series and Observatory (MOTO) sheds light on multi-decadal basin-scale fluctuations of anchovies and sardines: 20–21.
Coale, K.H., K.S. Johnson, F.P. Chavez, K.O. Buesseler, R.T. Barber, M.A. Brzezinski, W.P. Cochlan, F.J. Millero, P.G. Falkowski, J.E. Bauer, R.H. Wanninkhof, R.M. Kudela, M.A. Altabet, B.E. Hales, T. Takahashi, M.R. Landry, R.R. Bidigare, X. Wang, Z. Chase, P.G. Strutton, G.E. Friederich, M.Y. Gorbunov, V.P. Lance, A.K. Hilting, M.R. Hiscock, M. Demarest, W.T. Hiscock, K.A. Sullivan, S.J. Tanner, R.M. Gordon, C.N. Hunter, V.A. Elrod, S.E. Fitzwater, J.L. Jones, S. Tozzi, M. Koblizek, A.E. Roberts, J. Herndon, J. Brewster, N. Ladizinsky, G. Smith, D. Cooper, D. Timothy, S.L. Brown, K.E. Selph, C.C. Sheridan, B.S. Twining, and Z.I. Johnson. 2004. Southern Ocean Iron Enrichment Experiments (SOFeX): Carbon and Silicon Cycling in High- and Low- Si Waters. Science, 304: 408–414.
Kudela, R.M., and F.P. Chavez. 2004. The impact of coastal runoff on ocean color during an El Niño year in Central California. Deep Sea Research II, 51: 1173–1185. http://dx.doi.org/10.1016/j.dsr2.2004.04.002
Strutton, P.G., and F.P. Chavez. 2004. Biological heating in the equatorial Pacific: Observed variability and potential for real-time calculation.. Journal of Climate, 17: 1097–1109. http://dx.doi.org/10.1175/1520-0442(2004)017<1097_Bhitep>2.0.Co;2
Strutton, P.G., F.P. Chavez, R.C. Dugdale, and V. Hogue. 2004. Primary productivity in the central equatorial Pacific (3°S 130°W) during GasEx-2001.. Journal of Geophysical Research, 109: C08S06. http://dx.doi.org/10.1029/2003JC001790
Berelson, W., J. McManus, K. Coale, K.S. Johnson, D. Burdidge, T. Kilgore, D. Colodner, F.P. Chavez, R. Kudela, and J. Boucher. 2003. A time series of benthic flux measurements from Monterey Bay, California. Continental Shelf Research, 23: 457–481.
Chao, Y., Z. Li, J. Kindle, J.D. Paduan, and F.P. Chavez. 2003. A high-resolution surface vector wind product for coastal oceans: Blending satellite scatterometer measurements with regional mesoscale atmospheric model simulations. Geophysical Research Letters, 30: 1013. http://dx.doi.org/10.1029/2002gl015729
Chavez, F.P., J.P. Ryan, S.E. Lluch-Cota, and M. Niquen. 2003. From anchovies to sardines and back: multidecadal change in the Pacific Ocean. Science, 299: 217–221. http://dx.doi.org/10.1126/science.1075880
Collins, C.A., J.T. Pennington, C.G. Castro, T.A. Rago, and F.P. Chavez. 2003. The California current system off Monterey, California: physical and biological coupling. Deep-Sea Research II, 50: 2389–2404. http://dx.doi.org/10.1016/S0967-0645(03)00134-6
Fitzwater, S.E., K.S. Johnson, V.A. Elrod, J.P. Ryan, L.J. Coletti, S.J. Tanner, R.M. Gordon, and F.P. Chavez. 2003. Iron, nutrient and phytoplankton biomass relationships in upwelled waters of the California coastal system. Continental Shelf Research, 23: 1523–1544. http://dx.doi.org/10.1016/j.csr.2003.08.004
Johnson, K.S., V.A. Elrod, S.E. Fitzwater, J.N. Plant, F.P. Chavez, S.J. Tanner, R.M. Gordon, D.L. Westphal, K.D. Perry, J. Wu, and D.M. Karl. 2003. Surface ocean-lower atmosphere interactions in the Northeast Pacific Ocean Gyre: Aerosols, iron and the ecosystem response. Global Biogeochemical Cycles, 17: 1063. http://dx.doi.org/10.1029/2002gb002004
Strutton, P.G., and F.P. Chavez. 2003. Scales of biological-physical coupling in the Equatorial Pacific. Handbook of scaling methods in aquatic ecology: measurement, analysis and simulation.
Benson, S.R., D.A. Croll, B. Marinovic, F.P. Chavez, and J.T. Harvey. 2002. Temporal variability in the cetacean assemblage of a coastal upwelling center spanning an El Niño. Progress in Oceanography, 54: 279–291.
Castro, C.G., C.A. Collins, P.M. Walz, J.T. Pennington, R.P. Michisaki, G.E. Friederich, and F.P. Chavez. 2002. Nutrient variability during El Niño 1997–98 in the California current system off central California. Progress in Oceanography, 54: 171–184. http://dx.doi.org/10.1016/S0079-6611(02)00048-4
Castro, C.G., T.R. Baumgartner, S. Bograd, R. Castro, F.P. Chavez, C.A. Collins, R. Durazo, J. Garcý´a, G. Gaxiola-Castro, T. Hayward, A. Huyer, R. Lynn, A.S. Mascarenhas, M.R.D. Robert, R.L. Smith, P.A. Wheeler, and F.A. Whitney. 2002. Introduction to 'The 1997–8 El Niño Atlas of oceanographic conditions along the west coast of North America (23°N-50°N).'. Progress in Oceanography, 54: 501–508. http://dx.doi.org/10.1016/S0079-6611(02)00066-6
Chavez, F.P., C.A. Collins, A. Huyer, and D.L. Mackas. 2002. El Niño along the west coast of North America. Progress in Oceanography, 54: 1–5.
Chavez, F.P., J.T. Pennington, C.G. Castro, J.P. Ryan, R.P. Michisaki, B. Schlining, P.M. Walz, K.R. Buck, A. McFadyen, and C.A. Collins. 2002. Biological and chemical consequences of the 1997–98 El Niño in central California waters. Progress in Oceanography, 54: 205–232.
Collins, C.A., C.G. Castro, H. Asanuma, T.A. Rago, S.K. Han, R. Durazo, and F.P. Chavez. 2002. Changes in the hydrography of central California waters associated with the 1997–8 El Niño. Progress in Oceanography, 54: 129–147.
Friederich, G.E., P.M. Walz, M.G. Burczynski, and F.P. Chavez. 2002. Inorganic carbon in the central California upwelling system during the 1997–1999 El Niño - La Niña event. Progress in Oceanography, 54: 185–203. http://dx.doi.org/10.1016/S0079-6611(02)00049-6
Hopcroft, R.R., C. Clark, and F.P. Chavez. 2002. Copepod communities in Monterey Bay during the 1997 to 1999 EL Niño and La Nina. Progress in Oceanography, 54: 251–264.
Jahnke, R., L. Atkinson, J. Barth, F.P. Chavez, K. Daly, J. Edson, P. Franks, J. O'Donnell, and O. Schofield. 2002. Coastal ocean processes and observatories: Advancing coastal research.. Coastal Ocean Report 8, TR-02-01: 51.
Kindle, J.C., R. Hodur, S. deRada, J. Paduan, L.K. Rosenfeld, and F.P. Chavez. 2002. A COAMPSTM reanalysis for the eastern Pacific: Properties of the diurnal sea breeze along the central California coast. Geophysical Research Letters, 29: 2203.
Kudela, R.M., and F.P. Chavez. 2002. Multi-Platform remote sensing of new production in central California during the 1997–1998 El Niño. Progress in Oceanography, 54: 233–249. http://dx.doi.org/10.1016/S0079-6611(02)00051-4
Marinovic, B., D.A. Croll, N. Gong, S. Benson, and F.P. Chavez. 2002. Effects of the 1997–98 El Niño on zooplankton within the Monterey Bay coastal upwelling system with emphasis on the euphausiid community. Progress in Oceanography, 54: 265–277.
Ryan, J.P., F.P. Chavez, J.G. Bellingham, E. Rienecker, R. Kudela, A. Vander Woude, R. Maffione, and A. Fischer. 2002. Environmental processes in the Monterey Bay National Marine Sanctuary: Studies integrating AVIRIS and synoptic in situ sensing. Proceedings of the Eleventh JPL Airborne Earth Science Workshop: 307–318.
Ryan, J.P., P.S. Polito, P.G. Strutton, and F.P. Chavez. 2002. Unusual large-scale phytoplankton blooms in the equatorial Pacific. Progress in Oceanography, 55: 263–285. http://dx.doi.org/10.1016/S0079-6611(02)00137-4
Schwarz, J.N., P. Kowalczuk, S. Kaczmarek, G.F. Cota, B.G. Mitchell, M. Kahru, F.P. Chavez, A. Cunningham, D. McKee, P. Gege, M. Kishino, D.A. Phinney, and R. Raine. 2002. Two models for absorption by coloured dissolved organic matter (CDOM). Oceanologia, 44: 209–241.
Castro, C.G., F.P. Chavez, and C. Collins. 2001. The role of the California Undercurrent in the export of denitrified waters from the eastern tropical North Pacific. Global Biogeochemical Cycles, 21: 819–830. http://dx.doi.org/10.1029/2000gb001324
Hopcroft, R. R., J.C. Roff , and F.P. Chavez. 2001. Size paradigms in copepod communities: A re-examination. Hydrobiologia, 453/454: 133–141. http://dx.doi.org/10.1023/A:1013167917679
Johnson, K.S., C.K. Paull, J.P. Barry, and F.P. Chavez. 2001. A decadal record of underflows from a coastal river into the deep sea. Geology, 29: 1019–1022. http://dx.doi.org/10.1130/0091-7613(2001)029<1019_Adrouf>2.0.Co;2
Johnson, K.S., F.P. Chavez, V.A. Elrod, S.E. Fitzwater, J.T. Pennington, K.R. Buck, and P.M. Walz. 2001. The annual cycle of iron and the biological response in central California coastal waters. Geophysical Research Letters, 28: 1247–1250. http://dx.doi.org/10.1029/2000gl012433
Polito, P.S., Ryan, J.P., W.T. Liu, and F.P. Chavez. 2001. Oceanic and atmospheric anomalies of tropical instability waves. Geophysical Research Letters, 28: 2233–2336. http://dx.doi.org/10.1029/2000gl012400
Rau, G.H., F.P. Chavez, and G.E. Friederich. 2001. Plankton 13C/12C variations in Monterey Bay, California: Evidence of non-diffusive inorganic carbon uptake by phytoplankton in an upwelling environment. Deep Sea Research Part I: Oceanographic Research Papers, 48: 79–94.
Rau, G.H., S. Ralston, J.R. Southon, and F.P. Chavez. 2001. Upwelling and the condition and diet of juvenil rockfish: A study using 14C, 13C, and 15N natural abundances. Limnology and Oceanography, 46: 1565–1570.
Strutton, P.G., J.P. Ryan, and F.P. Chavez. 2001. Enhanced chlorophyll associated with tropical instability waves in the equatorial Pacific. Geophysical Research Letters, 28: 2005–2008. http://dx.doi.org/10.1029/2000gl012166
Suzuki, M.T., C.M. Preston, F.P. Chavez, and E.F. DeLong. 2001. Quantitative mapping of bacterioplankton populations in seawater: Field tests across an upwelling plume in Monterey Bay. Aquatic Microbial Ecology, 24: 117–127. http://dx.doi.org/10.3354/ame024117
Chavez, F.P., and C.A. Collins. 2000. Corrigendum to "Studies of the California Current System Part 2"; [Deep-Sea Research II, 47 (5–6), 2000]. Deep Sea Research Part II: Topical Studies in Oceanography, 47: 1.
Chavez, F.P., and C.A. Collins. 2000. Studies of the California current system part 2. Deep-Sea Research II, 47: 5–6.
Chavez, F.P., and C.A. Collins. 2000. Studies of the California current system: Present, past and future. Deep-Sea Research II, 47: 761–763.
Chavez, F.P., D. Wright, R. Herlien, M. Kelley, F. Shane, and P.G. Strutton. 2000. A device for protecting moored spectroradiometers from biofouling. Journal of Oceanographic and Atmospheric Technology, 17: 215–219. http://dx.doi.org/10.1175/1520-0426(2000)017<0215_Adfpms>2.0.Co;2
Kudela, R.M., and F.P. Chavez. 2000. Modeling the impact of the 1992 El Nino on new production in Monterey Bay, California. Deep-Sea Research Part II: Topical Studies in Oceanography, 47: 1055–1076. http://dx.doi.org/10.1016/S0967-0645(99)00136-8
Olivieri, R.A., and F.P. Chavez. 2000. A model of plankton dynamics for the coastal upwelling system of Monterey Bay, California. Deep-Sea Research II, 47: 1077–1106. http://dx.doi.org/10.1016/S0967-0645(99)00137-X
Pennington, J.T., and F.P. Chavez. 2000. Seasonal fluctuations of temperature, salinity, nitrate, chlorophyll and primary production at station H3/M1 over 1989-1996 in Monterey Bay, California. Deep-Sea Research II, 47: 947–973.
Scholin, C.A., F. Gulland, G.J. Doucette, S. Benson, M. Busman, F.P. Chavez, J. Cordaro, R. DeLong, A. De Vogelaere, J. Harvey, M. Haulena, K. Lefebvre, T. Lipscomb, S. Loscutoff, L.J. Lowenstine, R. Marin III, P.E. Miller, W.A. McLellan, P.D.R. Moeller, C.L. Powell, T. Rowles, P. Silvagni, M.W. Silver, T. Spraker, V. Trainer, and F.M. Van Dolah. 2000. Mortality of sea lions along the central California coast linked to a toxic diatom bloom. Nature, 403: 80–84. http://dx.doi.org/10.1038/47481
Strutton, P.G., and F.P. Chavez. 2000. Primary productivity in the equatorial Pacific during the 1997-98 El Niño. Journal of Geophyiscal Research, 105: 26089–26101.
Wilkerson, F.P., R.C. Dugdale, R.M. Kudela, and F.P. Chavez. 2000. Biomass and productivity in Monterey Bay, California: contribution of the large phytoplankton. Deep Sea Research Part II: Topical Studies in Oceanography, 47: 1003–1022. http://dx.doi.org/10.1016/S0967-0645(99)00134-4
Altabet, M.A., C.H. Pilskaln, R. Thunell, C. Pride, D. Sigman, F.P. Chavez, and R. Francois. 1999. The nitrogen isotope biogeochemistry of sinking particles from the margin of the eastern North Pacific. Deep-Sea Research I, 46: 655–679. http://dx.doi.org/10.1016/S0967-0637(98)00084-3
Chavez, F.P., P.G. Strutton, G.E. Friederich, R.A. Feely, G.C. Feldman, D.G. Foley, and M.J. McPhaden. 1999. Biological and chemical response of the Equatorial Pacific Ocean to the 1997-98 El Niño. Science, 286: 2126–2131.
Johnson, K.S., F.P. Chavez, and G.E. Friederich. 1999. Continental-shelf sediment as a primary source of iron for coastal phytoplankton. Nature, 398: 697–700. http://dx.doi.org/10.1038/19511
Miller, A.J., J.C. McWilliams, N. Schneider, J.S. Allen, J.A. Barth, R.C. Beardsley, F.P. Chavez, T.K. Chereskin, C.A. Edwards, R.L. Haney, K.A. Kelly, J.C. Kindle, L.N. Ly, J.R. Moisan, M.A. Noble, P.P. Niiler, L.Y. Oey, F.B. Schwing, R.K. Shearman, and M.S. Swenson. 1999. Observing and modeling the California Current System. EOS, 80: 533–539.
Chavez, F., and C. Collins. 1998. Studies of the California Current System. Deep Sea Research Part II: Topical Studies in Oceanography, 45.
Chavez, F.P., P.G. Strutton, and M.J. McPhaden. 1998. Biological-physical coupling in the central equatorial Pacific during the onset of the 1997-98 El Niñoo. Geophysical Research Letters, 25: 3543–3546.
Rau, G.H., C. Low, J.T. Pennington, K.R. Buck, and F.P. Chavez. 1998. Suspended particulate nitrogen d15N versus nitrate utilization: observations in Monterey Bay, CA.. Deep-Sea Research II, 45: 1603–1616.