Hamilton, A., and M. Chaffey. 2006. Long-term survivability of the MOOS EOM cabled mooring system. Office of Naval Research/Marine Technology Society Buoy Workshop Record.
Havenhand, J.N., G.I. Matsumoto, and E. Seidel. 2006. Megalodicopia hians in the Monterey submarine canyon: Distribution, larval development and culture. Deep-Sea Research Part I, 53: 215–222. http://dx.doi.org/10.1016/j.dsr.2005.11.005
Heesemann, M., H. Villinger, H. Jannasch, and M. Kastner. 2006. Long-term temperature measurements in ODP holes 1253A and 1255A off Costa Rica, ODP leg 205. Proceedings of the Ocean Drilling Program, Scientific Results, 205.
Henthorn, R., D. Caress, H. Thomas, R. McEwen, W. Kirkwood, C.K. Paull, and R. Keaten. 2006. High-resolution multibeam and subbottom surveys of submarine canyons and gas seeps using the MBARI mapping AUV. Proceedings of the Marine Technology Society / Institute of Electrical and Electronics Engineers Oceans Conference.
Hester, K.C., S.N. White, E.T. Peltzer, P.G. Brewer, and E.D. Sloan. 2006. Raman spectroscopic measurements of synthetic gas hydrates in the ocean. Marine Chemistry, 98: 304–314. http://dx.doi.org/10.1016/j.marchem.2005.09.006
Hey, R., G. Massoth, R.C. Vrijenhoek, P. Rona, J. Lupton, and D. Butterfield. 2006. Hydrothermal vent geology and biology at Earth's fastest spreading rates. Marine Geophysical Researches, 27: 1249–1262. http://dx.doi.org/10.1007/s11001-005-1887-x
Hoover, R.S., D. Hoover, M. Miller, M.R. Landry, E.H. DeCarlo, and F.T. Mackenzie. 2006. Zooplankton response to storm runoff in a tropical estuary: Bottom-up and top-down controls. Marine Ecology Progress Series, 318: 187–201. http://dx.doi.org/10.3354/meps318187
Hotaling, L., G.I. Matsumoto, D. Edelson, and T. Herrington. 2006. Using real world data in education. Proceedings of the Marine Technology Society / Institute of Electrical and Electronics Engineers Oceans Conference.
Johnsen, S., A. Kelber, E. Warrant, A.M. Sweeney, E.A. Widder, R.L. Lee Jr., and J. Hernández-Andrés. 2006. Crepuscular and nocturnal illumination and its effects on color perception in the nocturnal hawkmoth Deilephila elpenor. Journal of Experimental Biology, 209: 789–800.
Johnson, K.S. 2006. Manganese redox chemistry revisited. Science, 313: 1896–1897. http://dx.doi.org/10.1126/science.1133496
Johnson, K.S., L.J. Coletti, and F.P. Chavez. 2006. Diel nitrate cycles observed with in situ sensors predict monthly and annual new production. Deep-Sea Research Part I, 53: 561–573. http://dx.doi.org/10.1016/j.dsr.2005.12.004
Johnson, S.B, and J.B. Geller. 2006. Larval settlement can explain the adult distribution of Mytilus californianus Conrad but not of M. galloprovincialis Lamarck or M. trossulus Gould in Moss Landing, central California: Evidence from genetic identification of spat. Journal of Experimental Marine Biology and Ecology, 328: 136–145. http://dx.doi.org/10.1016/j.jembe.2005.07.007
Johnson, S.B, C.R. Young, W.J. Jones, A. Warén, and R.C. Vrijenhoek. 2006. Migration, isolation, and speciation of hydrothermal vent limpets (Gastropoda; Lepetodrilidae) across the Blanco Transform Fault. Biological Bulletin, 210: 140–157. http://dx.doi.org/10.2307/4134603
Jones, J., Y.J. Won, P.A.Y. Maas, P.J. Smith, R.A. Lutz, and R.C. Vrijenhoek. 2006. Evolution of habitat use by deep-sea mussels. Marine Biology, 148: 841–851. http://dx.doi.org/10.1007/s00227-005-0115-1
Jones, W.J., and R.C. Vrijenhoek. 2006. Evolutionary relationships within the "Bathymodiolus" childressi group. Cahiers de Biologie Marine, 47: 403–407.
Kastner, M., K. Becker, E. Davis, A. Fisher, H. Jannasch, E. Solomon, and G. Wheat. 2006. New insights into the hydrology of the ocean crust through long-term monitoring. Oceanography, 19: 30–41.
Kerkering, H. 2006. Introducing CeNCOOS. Ocean Views. National Office for Integrated and Sustained Ocean Observations, 27: 1–3.
Kogan, I., C.K. Paull, L. Kuhnz, E.J. Burton, S. Von Thun, H.G. Greene, and J. Barry. 2006. ATOC/Pioneer Seamount cable after 8 years on the seafloor: Observations and environmental impact. Continental Shelf Research, 26: 771–787. http://dx.doi.org/10.1016/j.csr.2006.01.010
Lonsdale, D.J., D.I. Greenfield, E.H. Hillebrand, R. Nuzzi, and G.T. Taylor. 2006. Contrasting microplanktonic composition and food web structure in two coastal embayments (Long Island, NY, USA). Journal of Plankton Research, 28: 891–905. https://doi.org/10.1093/plankt/fbl027
Lowry, R., L. Bermudez, and J. Graybeal. 2006. Semantic interoperability: A goal for marine data management. Proceedings of the International Council for the Exploration of the Sea (ICES) Annual Science Conference.
Lucier, A., M. Palmer, H. Mooney, K. Nadelhoffer, D. Ojima, and F.P. Chavez. 2006. Ecosystems and Climate Change: Research Priorities for the U.S. Climate Change Science Program. Recommendations from the Scientific Community: 50.
Lundholm, N., Ø. Moestrup, Y. Kotaki, C.A. Scholin, and P. Miller. 2006. Inter- and intraspecific variation of the Pseudo-nitzschia delicatissima-complex (Bacillariophyceae) illustrated by rRNA probes, morphological data and phylogenetic analyses identification of P. decipiens and P. dolorosa. Journal of Phycology, 42: 464–481.
Lutz, R.A., A.G. Collins, E.R. Annis, A.J. Reed, K. Bennett, K.M. Halanych, and R.C. Vrijenhoek. 2006. Stauromedusan populations inhabiting deep-sea hydrothermal vents along the southern East Pacific Rise. Cahiers de Biologie Marine, 47: 409–413.
Malkiel, E., J.N. Abras, E.A. Widder, and J. Katz. 2006. On the spatial distribution and NND between particles in the water column determined from in situ holographic measurements. Journal of Plankton Research, 28: 149–170.
Marsaglia, K.M., A.S. Davis, K. Rimkus, and D.A. Clague. 2006. Evidence for interaction of a spreading ridge with the outer California borderland. Marine Geology, 229: 259–272. http://dx.doi.org/10.1016/j.margeo.2006.02.006
Marsaglia, K.M., A.S. Davis, K. Rimkus, and D.A. Clague. 2006. Evidence for spreading ridge subduction along the outer California Borderland. Marine Geology, 229: 259–272.
Massion, E. 2006. Ocean observing system: Vision and details. Proceedings of the Marine Technology Society / Institute of Electrical and Electronics Engineers Oceans Conference.
Massion, E. 2006. The MARS cabled observatory: Overview and lessons learned. Proceedings of the Institute of Electrical and Electronics Engineers Fourth International Workshop on Scientific Use of Submarine Cables and Related Technologies.
Massion, E., and K. Raybould. 2006. MARS, the Monterey Accelerated Research System. Sea Technology, 47: 39–42.
McBride, L.R., P.R. Girguis, and C. Reimers. 2006. Power storage and conversion from an ocean microbial energy source. Proceedings of the Marine Technology Society / Institute of Electrical and Electronics Engineers Oceans Conference.
McDonnell, J., L. Hotaling, G.I. Matsumoto, C. Parsons, B. Meeson, and R. Bell. 2006. Exploring the merit and feasibility of using observing system data in education. Marine Technology Society Journal, 39: 21–28.
McGill, P., A.D. Sherman, B. Hobson, A.H. Uhlman, R.C. Glatts, and K.L. Smith. 2006. Rover II: An autonomous bottom-transecting instrument platform for long-term measurements in deep benthic environments. Proceedings of the 13th Ocean Sciences Meeting.
Metfies, K., K. Töbe, C.A. Scholin, and L.K. Medlin. 2006. Laboratory and field applications of ribosomal RNA probes to aid the detection and monitoring of harmful algae. Ecology of Harmful Algae: 311–325.
Miller, S.D, S.H.D. Haddock, C.D. Elvidge, and T.F. Lee. 2006. Twenty thousand leagues over the seas: The first satellite perspective on bioluminescent ‘milky seas’. International Journal of Remote Sensing, 27: 5131–5143. http://dx.doi.org/10.1080/01431160600554298
Moran, K., S. Farrington, E. Massion, C.K. Paull, R. Stephen, A. Trehu, and W. Ussler III. 2006. SCIMPI: A new seafloor observatory system. Proceedings of the Marine Technology Society / Institute of Electrical and Electronics Engineers Oceans Conference.
Needoba, J.A., A. Marchetti, M.F. Henry, P.J. Harrison, C.S. Wong, W.K. Johnson, and T.F. Pedersen. 2006. Stable nitrogen isotope dynamics of a mesoscale iron enrichment experiment in the NE subarctic pacific. Deep-Sea Research II, 53: 2214–2230. http://dx.doi.org/10.1016/j.dsr2.2006.05.021
O'Halloran, C., M.W. Silver, T.R. Holman, and C.A. Scholin. 2006. Heterosigma akashiwo in Central California waters. Harmful Algae, 5: 124–132. http://dx.doi.org/10.1016/j.hal.2005.06.009
O'Reilly, T., K. Headley, J. Graybeal, K. Gomes, D.R. Edgington, K.A. Salamy, D. Davis, and A. Chase. 2006. MBARI technology for self-configuring interoperable ocean observatories . Proceedings of the Marine Technology Society / Institute of Electrical and Electronics Engineers Oceans Conference.
Paull, C.K., W. Ussler III, P. Mitts, D. Caress, and G.J. West. 2006. Discordant 14C-stratigraphies in upper Monterey Canyon: A signal of anthropogenic disturbance. Marine Geology, 233: 21–36.
Pendleton, L., and J. Kildow. 2006. The non-market value of beach recreation in California. Shore and Beach, 74: 34–37.
Pennington, J.T., K.L. Mahoney, V.S. Kuwahara, D.D. Kolber, R. Calienes, and F.P. Chavez. 2006. Primary production in the eastern tropical Pacific: A review. Progress in Oceanography, 69: 285–317. http://dx.doi.org/10.1016/j.pocean.2006.03.012
Peterson, B., R. Emmett, R. Goericke, E. Venrick, A. Mantyla, S.J. Bograd, F.B. Schwing, R. Hewitt, N. Lo, W. Watson, J. Barlow, M. Lowry, C. Reiss, S. Ralston, K.A. Forney, S. Benson, B.E. Lavaniegos, W.J. Sydeman, D. Hyrenbach, R.W. Bradley, P. Warzybok, F.P. Chavez, K. Hunter, M. Weise, and J. Harvey. 2006. The state of the California Current, 2005–2006: Warm in the north, cool in the south. California Cooperative Oceanic Fisheries Investigations Report, 47: 30–74.
Rago, T.A., R. Michisaki, B. Marinovic, and K. Whitaker. 2006. Physical, nutrient and biological measurements of coastal waters off central California in October, 2005. Report to the Naval Postgraduate School: 70.
Reimers, C., P.R. Girguis, H. Stecher, and J. Westall. 2006. Microbial fuel cell energy from ocean cold seeps. Geobiology, 4: 123–136. http://dx.doi.org/10.1111/j.1472-4669.2006.00071.x
Rex, T., J. Roe, and J.R. de Young, Jr. 2006. The scale and the feather: A suggested evolution. Paleontology, 3: 125–128.
Rife, J.H., and S.M. Rock. 2006. Design and validation of a robotic control law for observation of deep-ocean jellyfish. Ieee Transactions on Robotics, 22: 282–291. http://doi.org/10.1109/TRO.2005.862484
Robinson, J.E., B.W. Eakins, T. Kanamatsu, J. Naka, E. Takahashi, K. Satake, J.R. Smith, D.A. Clague, and H. Yokose. 2006. JAMSTEC multibeam surveys and submersible dives around the Hawaiian Islands: A collaborative Japan-USA exploration of Hawaii's deep seafloor. U.S. Geological Survey Digital Data Series, 171.
Romanowicz, B., D. Stakes, D. Dolenc, D. Neuhauser, P. McGill, R. Uhrhammer, and T.M. Ramirez. 2006. The Monterey Bay Broadband Ocean Bottom Seismic Observatory. Annals of Geophysics, 49: 607–623.
Ryan, J.P., I. Ueki, Y. Chao, H. Zhang, P.S. Polito, and F.P. Chavez. 2006. Western pacific modulation of large phytoplankton blooms in the central and eastern equatorial Pacific. Journal of Geophysical Research, 111: 1–14. http://dx.doi.org/10.1029/2005JG000084
Schlining, B. 2006. Turning video into information. Proceedings of the Australian Society for Fish Biology Conference and Workshop on Cutting-edge Technologies in Fish and Fisheries Science.
Schlining, B., and N. Jacobsen Stout. 2006. MBARI's Video Annotation and Reference System. Proceedings of the Marine Technology Society / Institute of Electrical and Electronics Engineers Oceans Conference.
Scholin, C.A., S. Jensen, B. Roman, E. Massion, R. Marin III, C. Preston, D. Greenfield, W. Jones, and K. Wheeler. 2006. The Environmental Sample Processor (ESP)― An autonomous robotic device for detecting microorganisms remotely using molecular probe technology. Proceedings of the Marine Technology Society / Institute of Electrical and Electronics Engineers Oceans Conference.
Sharp, W., and D.A. Clague. 2006. Revised age and volcanic migration rates for the Hawaii-Emperor bend and vicinity. Science, 313: 1281–1284.
Sharp, W.D., and D.A. Clague. 2006. 50-Ma Initiation of Hawaiian-Emperor Bend records major change in Pacific plate motion. Science, 313: 1281–1284. http://dx.doi.org/10.1126/science.1128489
Sherman, A.D., E.T. Peltzer, W. Kirkwood, R.M. Dunk, P. Walz, J. Scholfield, C. Everlove, and P.G. Brewer. 2006. Lessons learned while optimizing instrument sensitivity for deep ocean raman spectroscopy. Proceedings of the Marine Technology Society / Institute of Electrical and Electronics Engineers Oceans Conference.
Smith Jr., K.L., R.J. Baldwin, H.A. Ruhl, M. Kahru, B.G. Mitchel, and R.S. Kaufmann. 2006. Climate effect on food supply to depths greater than 4,000 meters in the Northeast Pacific. Limnology and Oceanography, 51: 166–176.
Stakes, D., M.R. Perfit, M.A. Tivey, D.W. Caress, T.M. Ramirez, and N. Maher. 2006. The Cleft revealed: Geologic, magnetic, and morphologic evidence for construction of upper oceanic crust along the southern Juan de Fuca Ridge. Geochemistry, Geophysics, Geosystems, 7: 1–32. http://dx.doi.org/10.1029/2005GC001038
Stein, D.L., J.C. Drazen, K.L. Schlining, J. Barry, and L. Kuhnz. 2006. Snailfishes of Monterey Canyon: Video, photographic, and morphological observations. Journal of Fish Biology, 69: 970–986.
Stoffers, P., T.J. Worthington, U. Schwarz-Schampera, M.D. Hannington, G.J. Massoth, R. Hekinian, M. Schmidt, L.J. Lundsten, L.J. Evans, R. Vaiomo'unga, and T. Kerby. 2006. Submarine volcanoes and high-temperature hydrothermal venting on the Tonga arc, southwest Pacific. Geology, 34: 453–456. http://dx.doi.org/10.1130/G22227.1
Thistle, D., L. Sedlacek, K.R. Carman, J.W. Fleeger, P.G. Brewer, and J. Barry. 2006. Simulated sequestration of anthropogenic carbon dioxide at a deep-sea site: Effects on harpacticoid-copepod species. Journal of Experimental Marine Biology and Ecology, 330: 141–158.
Ussler III, W., and C.K. Paull. 2006. Pore water gradients in giant piston cores from the northern Gulf of Mexico; Chapter 8. Initial Report of the IMAGES VIII/PAGE 127 Gas Hydrates and Paleoclimate Cruise on the R/V Marion Dufresne in the Gulf of Mexico, 2–18 July 2002, U.S. Geological Survey Open-File Report 2004-1358.
Ussler III, W., C.K. Paull, P. McGill, D. Schroeder, and D. Ferrell. 2006. A test of the temperature, pressure, and conductivity (TPC) tool at a gas-free background. Proceedings of the Ocean Drilling Program: Scientific Results 201.
Ussler III, W., C.K. Paull, P. McGill, D. Schroeder, and D. Ferrell. 2006. Results of the temperature, pressure, and conductivity (TPC) tool on ODP leg 204. Proceedings of the Ocean Drilling Program: Scientific Results 204.
Von Damm, K.L., C.M. Parker, M.D. Lilley, D.A. Clague, R.A. Zierenberg, E.J. Olson, and J.S. McClain. 2006. Chemistry of vent fluids and its implications for subsurface conditions at Sea Cliff hydrothermal field, Gorda Ridge. Geochemistry, Geophysics, Geosystems, 7: 1–18. http://dx.doi.org/10.1029/2005GC001034
Vrijenhoek, R.C. 2006. Polyploid hybrids: Multiple origins of a treefrog species. Current Biology, 16: 245–247. http://dx.doi.org/10.1016/j.cub.2006.03.005
Webster, J.M., D.A. Clague, and J.C. Braga. 2006. Support for the Giant Wave Hypothesis: evidence from submerged terraces off Lanai, Hawaii. International Journal of Earth Sciences, 96: 517–524. http://dx.doi.org/10.1007/s00531-006-0107-5
Webster, J.M., D.A. Clague, J.C. Braga, H. Spalding, W. Renema, C. Kelley, B. Applegate, J.R. Smith, C.K. Paull, J.G. Moore, and D. Potts. 2006. Drowned coralline algal dominated deposits off Lanai, Hawaii; carbonate accretion and vertical tectonics over the last 30 ka. Marine Geology, 225: 223–246. http://dx.doi.org/10.1016/j.margeo.2005.08.002
White, S.N., P.G. Brewer, and E.T. Peltzer. 2006. Determination of gas bubble fractionation rates in the deep ocean by laser Raman spectroscopy. Marine Chemistry, 99: 12–23. http://dx.doi.org/10.1016/j.marchem.2004.10.006
White, S.N., R.M. Dunk, E.T. Peltzer, J.J. Freeman, and P.G. Brewer. 2006. In situ Raman analyses of deep-sea hydrothermal and cold seep systems (Gorda Ridge & Hydrate Ridge). Geochemistry, Geophysics, Geosystems, 7: 1–12. http://dx.doi.org/10.1029/2005GC001204
Winters, W., T. Lorenson, and C.K. Paull. 2006. IMAGES VIII/PAGE 127 Gas Hydrate and Paleoclimate Cruise on the R/V Marion Dufresne in the Gulf of Mexico, 2–18 July 2002; Introduction, Chapter 1. Initial Report of the Images VIII/PAGE 127 Gas Hydrate and Paleoclimate Cruise on the R/V Marion Dufresne in the Gulf of Mexico, 2–18 July 2002, U.S. Geological Survey Open-File Report 2004-1358.
Winters, W., T. Lorenson, and C.K. Paull. 2006. Initial report of the IMAGES VIII/PAGE 127 Gas Hydrate and Paleoclimate Cruise on the R/V Marion Dufresne in the Gulf of Mexico, 2–18 July 2002. U.S. Geological Survey Open-File Report 2004-1358.
Winters, W., T. Lorenson, C.K. Paull, and Y. Balut. 2006. Coring and gas hydrate related operations during the IMAGES VIII/PAGE 127 gas hydrate and paleoclimate cruise on the R/V Marion Dufresne in the Gulf of Mexico, 2–18 July 2002; Chapter 3. Initial Report of the IMAGES/PAGE 127 Gas Hydrate and Paleoclimate Cruise on the R/V Marion Dufresne in the Gulf of Mexico, 2–18 July 2002, U.S. Geological Survey Open-File Report 2004-1358.
Worden, A.Z. 2006. Picoeukaryote diversity in coastal waters of the Pacific Ocean. Aquatic Microbial Ecology, 43: 165–175. http://dx.doi.org/10.3354/ame043165
Zeidberg, L.D., W.M. Hamner, N. Nezlin, and A. Henry. 2006. The fishery for California market squid (Loligo opalescens) (Cephalopoda: Myopsida), from 1981 through 2003. Fishery Bulletin, 104: 46–59.
Zhang, Y., and J.G. Bellingham. 2006. Synoptic chemical sampling with distributed mobile systems: A possibility? Arctic/Subarctic Ocean Fluxes Newsletter, 5: 11–18.
Ananyev, G., Z.S. Kolber, D. Klimov, P.G. Falkowski, J.A. Berry, U. Rascher, R. Martin, and B. Osmond. 2005. Remote sensing of heterogeneity in photosynthetic efficiency, electron transport, and dissipation of excess light in Populus deltoides stands under ambient and elevated CO2 concentrations, and in a tropical forest canopy, using a new laser-induced fluorescence transient (LIFT) device. Global Change Biology, 11: 1195–1206.
Anderson, D.M., D.M. Kulis, B.A. Keafer, K.E. Gribble, R. Marin III, and C.A. Scholin. 2005. Identification and enumeration of Alexandrium spp. from the Gulf of Maine using molecular probes. Deep-Sea Research Part II, 52: 2467–2490. http://dx.doi.org/10.1016/j.dsr2.2005.06.015
Ayers, K., L. Rhodes, J. Tyrrell, M. Gladstone, and C.A. Scholin. 2005. International accreditation of sandwich hybridisation assay format DNA probes for micro-algae. New Zealand Journal of Marine and Freshwater Research, 39: 1225–1231.
Babin, M., J.J. Cullen, C.S. Roesler, P.L. Donaghay, G.J. Doucette, M. Kahru, M.R. Lewis, C.A. Scholin, M.E. Sieracki, and H.M. Sosik. 2005. New approaches and technologies for observing harmful algal blooms. Oceanography, 18: 210–227.
Barry, J.P., K.R. Buck, C. Lovera, L. Kuhnz, and P.J. Whaling. 2005. Utility of deep-sea CO2 release experiments in understanding the biology of a high CO2 ocean: Effects of hypercapnia on deep-sea meiofauna. Journal of Geophysical Research, Oceans, 110: C09S12. http://dx.doi.org/10.1029/2004JC002629
Bellingham, J.G., and Y. Zhang. 2005. Observing processes that vary in time and space with heterogeneous mobile networks. Proceedings of the International Workshop on Underwater Robotics: 9–16.
Bermudez, L., J. Graybeal, A. Isenor, R. Lowry, and D. Wright. 2005. Construction of marine vocabularies in the Marine Metadata Interoperability Project. Proceedings of the Marine Technology Society / Institute of Electrical and Electronics Engineers Oceans Conference.
Braby, C.E., and G.N. Somero. 2005. Ecological gradients and relative abundance of native (Mytilus trossulus) and invasive (Mytilus galloprovincialis) blue mussels in the California hybrid zone. Marine Biology, 148: 1249–1262. http://dx.doi.org/10.1007/s00227-005-0177-0
Bresina, J., A. Jonsson, P. Morris, and K. Rajan. 2005. Activity planning for the Mars Exploration Rovers. Proceedings for the International Conference on Automated Planning and Scheduling.
Brewer, P.G., E.T. Peltzer, P. Walz, I. Aya, K. Yamane, R. Kojima, Y. Nakajima, N. Nakayama, P. Haugan, and T. Johannessen. 2005. Deep ocean experiments with fossil fuel carbon dioxide: Creation and sensing of a controlled plume at 4 km depth. Journal of Marine Research, 63: 9–33. http://dx.doi.org/10.1357/0022240053693860
Buck, K.R., R. Marin III, and F.P. Chavez. 2005. Heterotrophic dinoflagellate fecal pellet production: Grazing of large, chain-forming diatoms during upwelling events in Monterey Bay, California. Aquatic Microbial Ecology, 40: 293–298. http://dx.doi.org/10.3354/ame040293
Caldeira, K., M. Akai, P.G. Brewer, B. Chen, P. Haugan, T. Iwama, P. Johnston, H. Kheshgi, Q. Li, T. Ohsumi, H. Poertner, C. Sabine, Y. Shirayama, and J. Thomson. 2005. Ocean Storage. Carbon Dioxide Capture and Storage: A special report of IPCC Working Group III: 279–317.
Caress, D.W., and D.N. Chayes. 2005. MB-System Version 5.0.6. Open source software distributed from the MBARI and L-DEO web sites, 5.0.6-5.0.7.
Chase, Z., K.S. Johnson, V.A. Elrod, J.N. Plant, S.E. Fitzwater, L. Pickell, and C.M. Sakamoto. 2005. Manganese and iron distributions off central California influenced by upwelling and shelf width. Marine Chemistry, 95: 235–254. http://dx.doi.org/10.1016/j.marchem.2004.09.006
Chavez, F.P. 2005. Biological consequences of interannual to multidecadal variability. In the Sea V.13: 643–679.
Croll, D.A., B. Marinovic, S. Benson, F.P. Chavez, N. Black, R. Ternullo, and B.R. Tershy. 2005. From wind to whales: Trophic links in a coastal upwelling system. Marine Ecology Progress Series, 289: 117–130. http://dx.doi.org/10.3354/meps289117
Davis, D.L. 2005. MBARI software infrastructure and applications for Monterey Ocean Observing Systems, Plug and Work Infrastructure. Standardisation in Seafloor Observatories.
Dawe, T.C., L.E. Bird, M. Talkovic, K. Brekke, D.J. Osborne, and S. Etchemendy. 2005. Operational support of regional cabled observatories, The MARS facility. Proceedings of the Marine Technology Society / Institute of Electrical and Electronics Engineers Oceans Conference.
DeVogelaere, A.P., E.J. Burton, T. Treju, C.E. King, D.A. Clague, M.N. Tamburri, G.M. Cailliet, R.E. Kochevar, and W.J. Duros. 2005. Deep-sea corals and resource protection at the Davidson Seamount, California, U.S.A.. Cold-Water Corals and Ecosystems: 1189–1198.
Dolenc, D., B. Romanowicz, D. Stakes, P. McGill, and D. Neuhauser. 2005. Observations of infragravity waves at the Monterey Ocean Bottom Broadband Station (MOBB). Geochemistry, Geophysics, Geosystems, 6: Q09002. http://dx.doi.org/10.1029/2005GC000988
Drazen, J.C., L.E. Bird, and J.P. Barry. 2005. Development of a hyperbaric trap-respirometer for the capture and maintenance of live deep-sea organisms. Limnology and Oceanography: Methods, 3: 488–498.
Dunk, R.M., E.T. Peltzer, P. Walz, and P.G. Brewer. 2005. Seeing a deep ocean CO2 enrichment experiment in a new light: Laser raman detection of dissolved CO2 in seawater. Environmental Science Technology, 39: 9630–9636.
Dunn, C.W., P.R. Pugh, and S.H.D. Haddock. 2005. Marrus claudanielis, a new species of deep-sea physonect siphonophore (Siphonophora, Physonectae). Bulletin of Marine Science, 76: 699–714.
Dunn, C.W., P.R. Pugh, and S.H.D. Haddock. 2005. Molecular Phylogenetics of the Siphonophora (Cnidaria), with implications for the evolution of functional specialization. Systematic Biology, 54: 916–935. http://dx.doi.org/10.1080/10635150500354837