Messié, M., J. Ledesma, D.D. Kolber, R.P. Michisaki, D.G. Foley, and F.P. Chavez. 2009. Potential new production estimates in four eastern boundary upwelling ecosystems. Progress in Oceanography, 83: 151–158.
Moline, M.A., S.M. Blackwell, J.F. Case, S.H.D. Haddock, C.M. Herren, C.M. Orrico, and E. Terrill. 2009. Bioluminescence to reveal structure and interaction of coastal planktonic communities. Deep-Sea Research Part II, 56: 232–245. http://dx.doi.org/10.1016/j.dsr2.2008.08.002
Normark, W.R., C.K. Paull, D.W. Caress, W. Ussler III, and R. Sliter. 2009. Fine-scale relief related to late Holocene channel shifting within the floor of upper Redondo Fan Valley in San Pedro Basin, offshore southern California. Sedimentology, 56: 1690–1704.
O'Dor, R., J. Acosta, O.A. Bergstad, R. Brainard, J. Brattey, M. Canals, D. Costa, J.K. Horne, K. Iken, J. Kocik, B. Konar, J. Payne, C. Reid, W. Ussler III, D. Steinke, and E. Vanden Berge. 2009. Bringing life to ocean observation . Proceedings of OceansObs '09: Sustaining Ocean Observations and Information for Society, ESA Publication WPP-306.
O'Reilly, T., K. Headley, D.R. Edgington, C. Rueda, K. Lee, E. Song, C. Albrechts, J. del Rio, D. Toma, A. Manuel, E. Delory, C. Waldmann, S. Fairgrieve, L. Bermudez, E. Bridger, P. Bogden, and A. Amirault. 2009. Instrument interface standards for interoperable ocean sensor networks. Proceedings of the Institute of Electrical and Electronics Engineers/Oceans Engineering Society, Biloxi, Mississippi, 26–29 October 2009.
Okubo, P., and D. Clague. 2009. Earthquakes. Encyclopedia of Islands, edited by R.G. Gillespie, D.A. Clague, 240-244. Berkeley: University of California Press, 2009.
Osborn, K.J., S.H.D. Haddock, F. Pleijel, L.P. Madin, and G.W. Rouse. 2009. Deep-sea, swimming worms with luminescent "bombs". Science, 325: 964. http://dx.doi.org/10.1126/science.1172488
Paduan, J., D. Clague, and A.S. Davis. 2009. Evidence that three seamounts off southern California were ancient islands. Marine Geology, 265: 146–156. http://dx.doi.org/10.1016/j.margeo.2009.07.003
Paduan, J., D.W. Caress, D.A. Clague, C.K. Paull, and H. Thomas. 2009. High-resolution mapping of erosional, tectonic, and volcanic hazards using the MBARI mapping AUV. Rendiconti Online Società Geologica Italiana, 7: 181–186.
Paduan, J., D.W. Caress, D.A. Clague, C.K. Paull, and H. Thomas. 2009. High-resolution mapping of mass wasting, tectonic, and volcanic hazards using the MBARI mapping AUV. Proceedings of the International Conference on Seafloor Mapping and Geohazards Assessment.
Paull, C.K. Cold Seeps. In Encyclopedia of Islands, edited by R.G. Gillespie, D.A. Clague, 174–177. Berkeley: University of California Press, 2009.
Paull, C.K., W. Ussler III, W.R. Normark, and R. Keaten. Tracking the dispersal of DDT residue-bearing sediments onto the floor of Santa Monica Basin. In Progress in Pesticides Research, edited by C.M. Kanzantzakis, 397–413. New York: Nova Science Publishers, 2009.
Plant, J.N., K.S. Johnson, J.A. Needoba, and L.J. Coletti. 2009. NH4-Digiscan: An in situ and laboratory ammonium analyzer for estuarine, coastal and shelf waters. Limnology and Oceanography: Methods, 7: 144–156.
Preston, C.M., R. Marin III, S.D. Jensen, J. Feldman, J.M. Birch, E.I. Massion, E.F. DeLong, M. Suzuki, K. Wheeler, and C.A. Scholin. 2009. Near real-time, autonomous detection of marine bacterioplankton on a coastal mooring in Monterey Bay, California, using rRNA-targeted DNA probes. Environmental Microbiology, 11: 1168–1180.
Quinones, R.A., M.H. Gutierrez, G. Daneri, D. Gutierrez, H.E. Gonzalez, and F.P. Chavez. 2009. The Humboldt Current system. Carbon and Nutrient Fluxes in Continental Margins: 44–64.
Rago, T.A., R. Michisaki, B. Marinovic, M. Blum, and K. Whitaker. 2009. Physical, nutrient, and biological measurements of coastal waters off Central California in January 2009. Report of the Naval Postgraduate School.
Rago, T.A., R. Michisaki, B. Marinovic, M. Blum, and K. Whitaker. 2009. Physical, nutrient, and biological measurements of coastal waters off Central California in October 2008. Report of the Naval Postgraduate School.
Rajan, K., F. Py, C. McGann, J. Ryan, T. O'Reilly, T. Maughan, and B. Roman. 2009. Onboard adaptive control of AUV's using automated planning and execution. Proceedings of the International Symposium on Unmanned Untethered Submersible Technology, Durham, New Hampshire, 23–26 August 2009.
Ramp, S.R., L.K. Rosenfeld, T.D. Tisch, and M.R. Hicks. 2009. Moored observations of the current and temperature structure over the continental slope off central California. Part I: A basic description of the variability. Journal of Geophysical Research.
Ramp, S.R., R.E. Davis, N.E. Leonard, I. Shulman, Y. Chao, A.R. Robinson, J. Marsden, P.F.J. Lermusiaux, D.M. Fratantoni, J.D. Paduan, F.P. Chavez, F.L. Bahr, X.S. Liang, W. Leslie, and Z. Li. 2009. Preparing to predict: The second Autonomous Ocean Sampling Network (AOSN-II) experiment in the Monterey Bay. Deep-Sea Research Part II, 56: 68–86. http://dx.doi.org/10.1016/j.dsr2.2008.08.013
Rehder, G., I. Leifer, P. Brewer, G.E. Friederich, and E.T. Peltzer. 2009. Controls on methane bubble dissolution inside and outside the hydrate stability field from open field experiments and numerical modeling. Marine Chemistry, 114: 19–30. http://dx.doi.org/10.1016/j.marchem.2009.03.004
Reid, P.C., E. Lewis-Brown, A. Fischer, M. Meredith, M. Sparrow, A. Andersson, A. Antia, U. Bathman, G. Beaugrand, H. Brix, S. Dye, M. Edwards, T. Furevik, R. Gangstø, H. Hátún, R.R. Hopcroft, M. Kendall, S. Kasten, R. Keeling, C. LeQuéré, F.T. Mackenzie, G. Malin, C. Mauritzen, J. Ólafsson, C.K. Paull, E. Rignot, K. Shimada, M. Vogt, C. Wallace, Z. Wang, and R. Washington. 2009. Impacts of the oceans on climate change. Advances in Marine Biology, 56: 151.
Robison, B., and W.M. Hamner. Pocket basins, and deep-sea speciation. In Encyclopedia of Islands, edited by R.G. Gillespie, D.A. Clague, 755–757. Berkeley: University of California Press, 2009.
Robison, B.H. 2009. Conservation of deep pelagic biodiversity. Conservation Biology, 23: 846–858. http://dx.doi.org/10.1111/j.1523-1739.2009.01219.x
Romanowicz, B., P. McGill, D. Neuhauser, and D. Dolenc. 2009. Acquiring real-time data from the broadband ocean bottom seismic observatory in Monterey Bay (MOBB). Seismological Research Letters, 80: 196–204.
Rose, J.M., Y. Feng, G. DiTullio, R. Dunbar, C.E. Hare, P. Lee, M. Lohan, M. Long, W.O. Smith Jr., B. Sohst, S. Tozzi, Y. Zhang, and D.A. Hutchins. 2009. Synergistic effects of iron and temperature on Antarctic plankton assemblages. Biogeosciences, 6: 3131–3147.
Rouse, G.W., N.G. Wilson, S.K. Goffredi, S.B. Johnson, T. Smart, C. Widmer, C.M. Young, and R.C. Vrijenhoek. 2009. Spawning and development in Osedax boneworms (Siboglinidae, Annelida). Marine Biology, 156: 395–405. http://dx.doi.org/10.1007/s00227-008-1091-z
Rueda, C., L. Bermudez, and J. Fredericks. 2009. The MMI Ontology Registry and Repository: A portal for marine metadata interoperability. Proceedings of the Marine Technology Society / Institute of Electrical and Electronics Engineers Oceans Conference, Biloxi, Mississippi, 26–29 October 2009.
Ryan, J., A. Fischer, R.M. Kudela, J.F.R. Gower, S.A. King, R. Marin III, and F.P. Chavez. 2009. Influences of upwelling and downwelling winds on red tide bloom dynamics in Monterey Bay, California. Continental Shelf Research, 29: 785–795. http://dx.doi.org/10.1016/j.csr.2008.11.006
Sakamoto, C.M., K.S. Johnson, and L.J. Coletti. 2009. An improved algorithm for the computation of nitrate concentrations in seawater using an in situ ultraviolet spectrophotometer. Limnology and Oceanography: Methods, 7: 132–143.
Scholin, C., G. Doucette, S. Jensen, B. Roman, D. Pargett, R. Marin III, C. Preston, W. Jones, J. Feldman, C. Everlove, A. Harris, N. Alvarado, E. Massion, J. Birch, D. Greenfield, R.C. Vrijenhoek, C. Mikulski, and K. Jones. 2009. Remote detection of marine microbes, small invertebrates, harmful algae and biotoxins using the Environmental Sample Processor (ESP). Oceanography, 22: 158–167.
Sedlacek, L., D. Thistle, K.R. Carman, J.W. Fleeger, and J.P. Barry. 2009. Effects of carbon dioxide on deep-sea harpacticoids revisited. Deep-Sea Research Part I, 56: 1018–1025. http://dx.doi.org/10.1016/j.dsr.2009.01.004
Shadden, S.C., F. Lekien, J.D. Paduan, F.P. Chavez, and J. Marsden. 2009. The correlation between surface drifters and coherent structures based on high-frequency radar data in Monterey Bay. Deep-Sea Research Part II, 56: 161–172. http://dx.doi.org/10.1016/j.dsr2.2008.08.008
Sherman, A.D., and K.L. Smith Jr. 2009. Deep-sea benthic boundary layer communities and food supply: A long-term monitoring strategy. Deep-Sea Research Part II, 56: 1754–1762. http://dx.doi.org/10.1016/j.dsr2.2009.05.020
Shulman, I., C. Rowley, S. Anderson, S. DeRada, J. Kindle, P. Martin, J. Doyle, J. Cummings, S.R. Ramp, F.P. Chavez, D. Fratantoni, and R.E. Davis. 2009. Impact of glider data assimilation on the Monterey Bay model. Deep-Sea Research Part II, 56: 188–198. http://dx.doi.org/10.1016/j.dsr2.2008.08.003
Skikne, S.A., R.E. Sherlock, and B.H. Robison. 2009. Uptake of dissolved organic matter by ephyrae of two species of scyphomedusae. Journal of Plankton Research, 31: 1563–1570. http://dx.doi.org/10.1093/plankt/fbp088
Smith Jr., K.L., H.A. Ruhl, B.J. Bett, D.S.M. Billett, R. Lampitt, and R.S. Kaufmann. 2009. Climate, carbon cycling and deep-ocean ecosystems. Proceedings of the National Academy of Sciences, 106: 19211–19218.
Smith Jr., W.O., S. Tozzi, A. Shields, J. Dreyer, J. Peloquin, and V. Asper. 2009. Interannual, seasonal, and event-scale variability in the Ross Sea. Ocean Carbon and Biogeochemistry Newsletter, 2: 1–4.
Solomon, E.A., M. Kastner, C.G. Wheat, H. Jannasch, G. Robertson, E.E. Davis, and J.D. Morris. 2009. Long-term hydrogeochemical records in the oceanic basement and forarc prism at the Costa Rica subduction zone. Earth and Planetary Science Letters, 282: 240–251.
Steinbuck, J., M.T. Stacey, M.A. McManus, O.M. Cheriton, and J.P. Ryan. 2009. Observations of turbulent mixing in a phytoplankton thin layer: Implications for formation, maintenance, and breakdown. Limnology and Oceanography, 54: 1353–1369. http://dx.doi.org/10.4319/lo.2009.54.4.1353
Swift, H.F., W.M. Hamner, B.H. Robison, and L.P. Madin. 2009. Feeding behavior of the ctenophore Thalassocalyce inconstans: Revision of anatomy of the order Thalassocalycida. Marine Biology, 156: 1049–1056. http://dx.doi.org/10.1007/s00227-009-1149-6
Takahashi, T., S.C. Sutherland, R. Wanninkhof, C. Sweeney, R.A. Feely, D.W. Chipman, B. Hales, G.E. Friederich, F.P. Chavez, C. Sabine, A. Watson, D.C.E. Bakker, U. Schuster, N. Metzl, H. Yoshikawa-Inoue, M. Ishii, T. Midorikawa, Y. Nojiri, A. Kortzinger, T. Steinhoff, M. Hoppema, J. Olafsson, T.S. Arnarson, B. Tilbrook, T. Johannessen, A. Olsen, R. Bellerby, C.S. Wong, B. Delille, N.R. Bates, and H.J.W. de Baar. 2009. Climatological mean and decadal change in surface ocean pCO2, and net sea-air CO2 flux over the global oceans. Deep-Sea Research Part I, 56: 2075–2076.
Vardaro, M.F., H.A. Ruhl, and K.L. Smith Jr. 2009. Climate variation, carbon flux, and bioturbation in the abyssal North Pacific. Limnology and Oceanography, 54: 2081–2088. http://dx.doi.org/10.4319/lo.2009.54.6.2081
Vrijenhoek, R.C. 2009. Cryptic species, phenotypic plasticity, and complex life histories: Assessing deep-sea faunal diversity with molecular markers. Deep-Sea Research Part II, 56: 1713–1723. http://dx.doi.org/10.1016/j.dsr2.2009.05.016
Vrijenhoek, R.C. Hydrothermal vents. In Encyclopedia of Islands, edited by R.G. Gillespie, D.A. Clague, 424–427. Berkeley: University of California Press, 2009.
Vrijenhoek, R.C., and E.D. Parker. Geographical parthenogenesis, general purpose genotypes and frozen niche variation. Lost Sex: the Evolutionary Biology of Parthenogenesis, edited by I. Schön, K. Martens, P. van Dijk, 99–131. Dordrecht: Springer, 2009.
Vrijenhoek, R.C., S.B. Johnson, and G.W. Rouse. 2009. A remarkable diversity of bone-eating worms (Osedax; Siboglinidae; Annelida). BMC Biology, 7: 74. http://dx.doi.org/10.1186/1741-7007-7-74
Webster, J.M., J.C. Braga, D. Clague, C. Gallup, J.R. Hein, D. Potts, W. Renema, R. Riding, K. Riker-Coleman, E. Silver, and L.M. Wallace. 2009. Coral reef evolution on rapidly subsiding margins. Global and Planetary Change, 66: 129–148. http://dx.doi.org/10.1016/j.gloplacha.2008.07.010
Williams, G.C., and L. Lundsten. 2009. The nephtheid soft coral genus Gersemia (Marenzeller, 1878) with the description of a new species from the northeast Pacific and a review of two additional species (Octocorallia: Alcyonacea). Zoologische Mededelingen, 83: 1067–1081.
Woodson, C.B., L. Washburn, J.A. Barth, D.J. Hoover, A.R. Kirincich, M.A. McManus, J.P. Ryan, and J. Tyburczy. 2009. The northern Monterey Bay upwelling shadow front: Observations of a coastally and surface-trapped buoyant plume. Journal of Geophysical Research, 114: 1–15. http://dx.doi.org/10.1029/2009JC005623
Worden, A. Z., J.H. Lee, T. Mock, P. Rouzé, M.P. Simmons, and A.L. Aerts. 2009. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 324: 268–272. http://dx.doi.org/10.1126/science.1167222
Zhang, J., Q. Hart, M. Gertz, C. Rueda, and J. Bergamini. 2009. Sensor data dissemination systems using web-based standards: A case study of publishing data in support of evapotranspiration models in California. Civil Engineering and Environmental Systems, 26: 35–52. http://dx.doi.org/10.1080/10286600802003567
Zhang, X., K.C. Hester, O. Mancillas, E.T. Peltzer, P.M. Walz, and P.G. Brewer. 2009. Geochemistry of chemical weapon breakdown products on the seafloor: 1,4-Thioxane in sea water. Environmental Science & Technology, 43: 610–615.
Zhang, Y., R.S. McEwen, J. Ryan, and J.G. Bellingham. 2009. An adaptive triggering method for capturing peak samples in a thin phytoplankton layer by an autonomous underwater vehicle. Proceedings of the Marine Technology Society/Institute of Electrical and Electronics Engineers Oceans Conference, Biloxi, Mississippi, 26–29 October 2009.
Barry, J.P., C. Lovera, C. Okuda, E. Nelson, and E. Pane. 2008. A gas-controlled aquarium system for ocean acidification studies. Proceedings of the Marine Technology Society / Institute of Electrical and Electronics Engineers Kobe Techno Ocean Meeting.
Bellingham, J.G. 2008. Powering robotic ocean observing systems. Lithium Mobile Power, Second Edition.
Bellingham, J.G., and M.A. Godin. 2008. Exploring ocean data. SIGMOD Record Jim Gray Tribute Issue, 37: 78–82.
Bellingham, J.G., E. Cokelet, and W.J. Kirkwood. 2008. Observation of warm water transport and mixing in the Arctic Basin with the ALTEX AUV. Proceedings of the Institute of Electrical and Electronics Engineers / Oceanic Engineering Society AUV Conference.
Bertrand, A., F. Gerlotto, S. Bertrand, M. Gutiérrez, L. Alza, A. Chipollini, E. Diaz, P. Espinoza, L. Ledesma, R. Quesquén, S. Peraltilla, and F.P. Chavez. 2008. Schooling behaviour and environmental forcing in relation to anchoveta distribution: An analysis across multiple spatial scales. Progress in Oceanography, 79: 264–277. http://dx.doi.org/10.1016/j.pocean.2008.10.018
Bograd, S.J., C.G. Castro, E. Di Lorenzo, D.M. Palacios, H. Bailey, W. Gilly, and F.P. Chavez. 2008. Oxygen declines and the shoaling of the hypoxic boundary in the California Current. Geophysical Research Letters, 35: 1–6. http://dx.doi.org/10.1029/2008GL034185
Booth, J.A.T., H.A. Ruhl, L.L. Lovell, and K.L. Smith Jr. 2008. Size frequency dynamics of northeast Pacific abyssal ophiuroids (Echinodermata: Ophiuroidea). Marine Biology, 154: 933–941.
Brewer, P.G., and J.P. Barry. 2008. The other CO2 problem. Scientific American: Special Edition Earth 3.0: 22–23.
Brewer, P.G., and N. Nakayama. 2008. What lies beneath: A plea for complete information. Environmental Science and Technology, 42: 1394–1399.
Buck, K.R., F.P. Chavez, and A.S. Davis. 2008. Minidiscus trioculatus, a small diatom with a large presence in the upwelling systems of central California. Nova Hedwigia Beiheft, 133: 1–6.
Buesseler, K.O., S. Doney, D.M. Karl, P.W. Boyd, K. Caldeira, F. Chai, K.H. Coale, H.J.W. de Baar, P. Falkowski, K.S. Johnson, R. Lampitt, A. Michaels, W. Naqvi, V. Smetacek, S. Takeda, and A. Watson. 2008. Ocean iron fertilization—moving forward in a sea of uncertainty. Science, 319: 162. http://dx.doi.org/10.1126/science.1154305
Burton, E.J., and L. Lundsten. 2008. Davidson Seamount Taxonomic Guide. Marine Sanctuaries Conservation Series ONMS-08-08: 145.
Caress, D.W., and D.N. Chayes. 2008. MB-System Version 5.1.1. Open source software distributed from the MBARI and L-DEO web sites, 5.1.1.
Caress, D.W., H. Thomas, W.J. Kirkwood, R. McEwen, R. Henthorn, D.A. Clague, C.K. Paull, J.B. Paduan, and K.L. Maier. 2008. High-resolution multibeam, sidescan, and subbottom surveys of seamounts, submarine canyons, deep-sea fan channels, and gas seeps using the MBARI AUV D. Allan B.. Marine Habitat Mapping Technology for Alaska: 47–70.
Carr, S.D., X.J. Capet, J.C. McWilliams, J.T. Pennington, and F.P. Chavez. 2008. The influence of diel vertical migration on zooplankton transport and recruitment in an upwelling region: Estimates from a coupled behavioral-physical model. Fisheries Oceanography, 17: 1–15. http://dx.doi.org/10.1111/j.1365-2419.2007.00447.x
Chavez, F.P., A. Bertrand, R. Guevara, P. Soler, and J. Csirke. 2008. The northern Humboldt Current System: Brief history, present status and a view towards the future. Progress in Oceanography, 79: 95–105. http://dx.doi.org/10.1016/j.pocean.2008.10.012
Clague, D.A., and A.T. Calvert. 2008. Postshield stage transitional volcanism on Mahukona Volcano, Hawaii. Bulletin of Volcanology, 71: 533–539. http://dx.doi.org/10.1007/s00445-008-0240-z
Cokelet, E.D., N. Tervalon, and J.G. Bellingham. 2008. Hydrography of the West Spitsbergen Current, Svalbard Branch: Autumn 2001. Journal of Geophysical Research, 113. http://dx.doi.org/10.1029/2007JC004150
Collins, A.G., B. Bentlage, A. Lindner, D. Lindsay, S.H.D. Haddock, G. Jarms, J.L. Norenburg, T. Jankowski, and P. Cartwright. 2008. Phylogenetics of Trachylina (Cnidaria: Hydrozoa) with new insights on the evolution of some problematical taxa. Journal of the Marine Biological Association of the United Kingdom, 88: 1673–1685. http://dx.doi.org/10.1017/S0025315408001732
Cuvelier, M.L., A. Ortiz, E. Kim, H. Moehlig, D.E. Richardson, J.F. Heidelberg, J.M. Archibald, and A.Z. Worden. 2008. Widespread distribution of a unique marine protistan lineage. Environmental Microbiology, 10: 1621–1634. http://dx.doi.org/10.1111/j.1462-2920.2008.01580.x
Davis, A.S., D.A. Clague, B.L. Cousens, R. Keaten, and J.B. Paduan. 2008. Geochemistry of basalt from the North Gorda segment of the Gorda Ridge: Evolution toward ultra-slow spreading ridge lavas due to decreasing magma supply. Geochemistry, Geophysics, Geosystems, 9. http://dx.doi.org/10.1029/2007GC001775
Demir, E., K.J. Coyne, M.A. Doblin, S.M. Handy, and D.A. Hutchins. 2008. Assessment of microzooplankton grazing on Heterosigma akashiwo using a species-specific approach combining quantitative real time PCR (QPCR) and dilution methods. Microbial Ecology, 55: 583–584.
Deschamps, P., H. Moreau, A.Z. Worden, D. Dauvillée, and S.G. Ball. 2008. Early gene duplication within chloroplastida and its correspondence with relocation of starch metabolism to chloroplasts. Genetics, 178: 2373–2387. http://dx.doi.org/10.1534/genetics.108.087205
Dixon, J.E., D.A. Clague, B. Cousens, M.L. Monsalve and M.L. Uhl. 2008. Carbonatite and silicate melt metasomatism of the mantle surrounding the Hawaiian plume: Evidence from volatiles, trace elements, and radiogenic isotopes in rejuvenated-stage lavas from Niihau, Hawaii. Geochemistry, Geophysics, Geosystems, 9: 1–34. http://dx.doi.org/10.1029/2008GC002076
Drazen, J.C., B.N. Popp, C.A. Choy, T. Clemente, L. DeForest, and K.L. Smith Jr. 2008. Bypassing the abyssal benthic food web: Macrourid diet in the eastern North Pacific inferred from stomach content and stable isotope analyses. Limnology and Oceanography, 53: 2644–2654. http://dx.doi.org/10.4319/lo.2008.53.6.2644
Dunn, C.W., A. Hejnol, D.Q. Matus, K. Pang, W.E. Browne, S.A. Smith, E. Seaver, G.W. Rouse, M. Obst, G.D. Edgecombe, M.V. Sorensen, S.H.D. Haddock, A. Schmidt-Rhaesa, A. Okusu, R.M. Kristensen, W.C. Wheeler, M.Q. Martindale, and G. Giribet. 2008. Broad phylogenomic sampling improves resolution of the animal tree of life. Nature, 452: 745–749. http://dx.doi.org/10.1038/nature06614
Elrod, V.A., K.S. Johnson, S.E. Fitzwater, and J.N. Plant. 2008. A long-term, high-resolution record of surface water iron concentrations in the upwelling-driven central California region. Journal of Geophysical Research, 113: 1–13. http://dx.doi.org/10.1029/2007JC004610
Freon, P., C. Werner, and F.P. Chavez. 2008. Conjectures on the influence of climate change on ocean ecosystems dominated by small pelagic fish. Climate Change and Small Pelagic Fish: 312–343.
Friederich, G.E., J. Ledesma, O. Ulloa, and F.P. Chavez. 2008. Air-sea carbon dioxide fluxes in the coastal southeastern tropical Pacific. Progress in Oceanography, 79: 156–166. http://dx.doi.org/10.1016/j.pocean.2008.10.001
Génio, L., S.B. Johnson, R.C. Vrijenhoek, M.R. Cunha, P.A. Tyler, S. Kiel, and C.T.S. Little. 2008. New record of “Bathymodiolus” mauritanicus Cosel 2002 from the Gulf of Cadiz (NE Atlantic) mud volcanoes. Journal of Shellfish Research, 27: 53–61.
Goffredi, S.K., W.J. Jones, H. Erhlich, A. Springer, and R.C. Vrijenhoek. 2008. Epibiotic bacteria associated with the recently discovered Yeti crab, Kiwa hirsuta. Environmental Microbiology, 10: 2623–2634. http://dx.doi.org/10.1111/j.1462-2920.2008.01684.x
Greenfield, D., R. Marin III, G.J. Doucette, C. Mikulski, S. Jensen, B. Roman, N. Alvarado, and C.A. Scholin. 2008. Field applications of the second-generation Environmental Sample Processor (ESP) for remote detection of harmful algae: 2006–2007. Limnology and Oceanography: Methods, 6: 667–679.
Guillou, L., M. Viprey, A. Chambouvet, R.M. Welsh, A.R. Kirkham, R. Massanna, D.J. Scanlan, and A.Z. Worden. 2008. Widespread occurrence and genetic diversity of marine parasitoids belonging to Syndiniales (Alveolata). Environmental Microbiology, 10: 3349–3365. http://dx.doi.org/10.1111/j.1462-2920.2008.01731.x
Haddock, S. H. D. 2008. Reconsidering evidence for potential climate-related increases in jellyfish. Limnology and Oceanography, 53: 2759–2762.
Handy, S.H., E. Demir, K.J. Coyne, C.E. Hare, K.J. Portune, and D.A. Hutchins. 2008. Using quantitative PCR analyses to investigate competition between dinoflagellates and raphidophytes at various N:P ratios. Harmful Algae, 7: 599–613.
Harvey, J.B.J., M.S. Hoy, and R.J. Rodriguez. 2008. Molecular detection of native and invasive marine invertebrate larvae present in ballast and open water environmental samples collected in Puget Sound. Journal of Experimental Marine Biology and Ecology, 369: 93–99.
Hein, J.R., D.A. Clague, R.A. Koski, R.W. Embley, and R.E. Dunham. 2008. Metalliferous Sediment and a Silica-Hematite Deposit within the Blanco Fracture Zone, Northeast Pacific. Marine Georesources & Geotechnology, 26: 317–339. http://dx.doi.org/10.1080/10641190802430986
Hester, K.C., E.T. Peltzer, W. Kirkwood, and P.G. Brewer. 2008. Unanticipated consequences of ocean acidification: A noisier ocean at lower pH. Geophysical Research Letters, 35: 1–5. http://dx.doi.org/10.1029/2008GL034913
Holm, C.S., Z. Chase, H.W. Jannasch, and K.S. Johnson. 2008. Development and initial deployments of an autonomous in situ instrument for long-term monitoring of copper (II) in the marine environment. Limnology and Oceanography: Methods, 6: 336–346.
Jannasch, H.W., L.J. Coletti, K.S. Johnson, S.E. Fitzwater, J.A. Needoba, and J.N. Plant. 2008. The Land/Ocean Biogeochemical Observatory: A robust networked mooring system for continuously monitoring complex biogeochemical cycles in estuaries. Limnology and Oceanography: Methods, 6: 263–276.
Johnson, K.S., and J.A. Needoba. 2008. Mapping the spatial variability of plankton metabolism using nitrate and oxygen sensors on an autonomous underwater vehicle. Limnology and Oceanography, 53: 2237–2250. http://dx.doi.org/10.4319/lo.2008.53.5_part_2.2237
Johnson, S.B., A. Warén, and R.C. Vrijenhoek. 2008. DNA barcoding of Lepetodrilus limpets reveals cryptic species. Journal of Shellfish Research, 27: 43–51. http://dx.doi.org/10.2983/0730-8000(2008)27[43:Dbollr]2.0.Co;2
Jones, W.J., C.M. Preston, R. Marin III, C.A. Scholin, and R.C. Vrijenhoek. 2008. A robotic molecular method for in situ detection of marine invertebrate larvae. Molecular Ecology Resources, 8: 540–550. http://dx.doi.org/10.1111/j.1471-8286.2007.02021.x
Jones, W.J., S.B. Johnson, G.W. Rouse, and R.C. Vrijenhoek. 2008. Marine worms (genus Osedax) colonize cow bones. Proceedings of the Royal Society B, 275: 387–391. http://dx.doi.org/10.1098/rspb.2007.1437