Barry, J.P., S. Widdicombe, and J.M. Hall-Spencer. Effects of ocean acidification on marine biodiversity and ecosystem function. In Ocean Acidification, edited by J.P. Gattuso, L. Hansson, 192–209. Oxford, UK, Oxford University Press: 2011.
Becker, M., D. Crichton, E. Deelman, Y. Gil, T. Harmon, S. Granger, Q. Guo, P. Hanson, A. Hofmann, B. Jones, C. Knoblock, M. McCann, T. Stough, P. Szekely, R. Utz, and S. Villamizar. 2011. Information Sciences Institute Technical Report Number ISI-TR-674. Workshop on Aquatic Ecosystem Sustainability, 2011: 34.
Bertrand, A., A. Chaigneau, S. Peraltilla, J. Ledesma, M. Graco, F. Monetti, and F.P. Chavez. 2011. Oxygen: A fundamental property regulating pelagic ecosystem structure in the Coastal Southeastern Tropical Pacific. PLoS ONE, 6: E29558. http://dx.doi.org/10.1371/journal.pone.0029558
Bolstad, K.S.R., and H.J.T. Hoving. 2011. Spermatangium structure and implantation sites in onychoteuthid squid (Cephalopoda: Oegopsida). Marine Biodiversity Records, 4: E5. http://dx.doi.org/10.1017/S175526721000120X
Brewer, P.G., W. Ussler III, E.T. Peltzer, P. Walz, W. Kirkwood, and K.C. Hester. 2011. Accurate in situ observation of deep-sea sediment dissolved methane profiles in hydrate bearing provinces. 7th International Conference on Gas Hydrates, Edinburgh, Scotland, 17–21 July 2011.
Caress, D.W., and D.N. Chayes. 2011. MB-System Version 5.3.1909. Open source software distributed from the MBARI and L-DEO web sites.
Castro, C.G., C.A. Collins, J.T. Pennington, D. Zuniga, and F.P. Chavez. 2011. Spatial distribution and offshore export of total organic carbon along the eastern boundary of the Subtropical North Pacific. Advances in Oceanography and Limnology, 2: 93–106. http://dx.doi.org/10.1080/19475721.2011.626941
Cazenave, F., R. Zook, D. Carroll, M. Flagg, and S. Kim. 2011. Development of the ROV SCINI and deployment in McMurdo Sound, Antarctica. Journal of Ocean Technology, 6: 39–58.
Cazenave, F., Y. Zhang, E. McPhee-Shaw, J.G. Bellingham, and T.P. Stanton. 2011. High-resolution surveys of internal tidal waves in Monterey Bay, California, using an autonomous underwater vehicle. Limnology and Oceanography: Methods, 9: 571–581. http://dx.doi.org/10.4319/lom.2011.9.571
Ceballos, A., S. Bensalem, A. Cesta, L. de Silva, S. Fratini, F. Ingrand, J. Ocón, A. Orlandini, F. Py, K. Rajan, R. Rasconi, and M. van Winnendael. 2011. A goal-oriented autonomous controller for space exploration. 11th Symposium on Advanced Space Technologies in Robotics and Automation (ASTRA 2011), Noordwijk, Netherlands, 12–14 April 2011.
Chavez, F.P., M. Messié, and J.T. Pennington. 2011. Marine primary production in relation to climate variability and change. Annual Review of Marine Science, 3: 227–260. http://dx.doi.org/10.1146/annurev.marine.010908.163917
Clague, D.A., J.B. Paduan, D.W. Caress, H. Thomas, W.W. Chadwick Jr., and S.G. Merle. 2011. Volcanic morphology of West Mata Volcano, NE Lau Basin, based on high-resolution bathymetry and depth changes. Geochemistry, Geophysics, Geosystems, 12: QOAF03. http://dx.doi.org/10.1029/2011GC003791
Clague, G.E., W.J. Jones, J.B. Paduan, D.A. Clague, and R.C. Vrijenhoek. 2011. Phylogeography of Acesta clams from submarine seamounts and escarpments along the western margin of North America. Marine Ecology, 33: 75–87. http://dx.doi.org/10.1111/j.1439-0485.2011.00458.x
Coykendall, D.K., S.B. Johnson, S.A. Karl, R.A. Lutz, and R.C. Vrijenhoek. 2011. Genetic diversity and demographic instability in Riftia pachyptila tubeworms from eastern Pacific hydrothermal vents. BMC Evolutionary Biology, 11: 96. http://dx.doi.org/10.1186/1471-2148-11-96
Das, J., T. Maughan, M. McCann, M. Godin, T. O'Reilly, M. Messié, F. Bahr, K. Gomes, F. Py, J.G. Bellingham, G.S. Sukhatme, and K. Rajan. 2011. Towards mixed-initiative, multi-robot field experiments: Design, deployment, and lessons learned. Proceedings of the International Conference on Intelligent Robots and Systems, San Francisco, California, 25–30 September 2011.
del Rio, J., D.M. Toma, T.C. O'Reilly, A.H. Broring, A. Manuel, K.L. Headley, and D. Edgington. 2011. Interoperable data management and instrument control experiences at OBSEA. OCEANS 2011, 2011: 1–4. http://dx.doi.org/10.1109/Oceans-Spain.2011.6003616
Demir-Hilton, E., S. Sudek, M.L. Cuvelier, C.L. Gentemann, J.P. Zehr, and A.Z. Worden. 2011. Global distribution patterns of distinct clades of the photosynthetic picoeukaryote Ostreococcus. The ISME Journal, 5: 1095–1107. http://dx.doi.org/10.1038/ismej.2010.209
Edgington, D.R., R. Butler, T. Fleury, K. Gomes, J. Graybeal, R.A. Herlien, and V. Welch. 2011. Observatory Middleware Framework (OMF). In Remote Instrumentation Services on the e-Infrastructure, edited by F. Davoli, N. Meyer, R. Pugliese, and S. Zappatore, 231–240. New York: Springer, 2011.
Faichney, I.D.E., J.M. Webster, D.A. Clague, J.C. Braga, W. Renema, and D.C. Potts. 2011. The impact of the Mid-Pleistocene Transition on the composition of submerged reefs of the Maui Nui Complex, Hawaii. Palaeogeography, Palaeoclimatology, Palaeoecology, 299: 493–506. http://dx.doi.org/10.1016/j.palaeo.2010.11.027
Ferrario, M.E., A.O. Cefarelli, B. Robison, and M. Vernet. 2011. Thalassioneis signyensis (Bacillariophyceae) from northwest Weddell Sea icebergs, an emendation of the generic description. Journal of Phycology, 48: 222–230. http://dx.doi.org/10.1111/j.1529-8817.2011.01097.x
Field, D.B., F. Chavez, C.B. Lange, and P.E. Smith. 2011. Variations in fisheries and complex ocean environments. Shifting Baselines, 2: 59–76. http://dx.doi.org/10.5822/978-1-61091-029-3_5
Fredericks, J.J., and C. Rueda. 2011. Content-infused OGC web services enabling dynamic quality assessment in observing systems. Workshop on Sensor Web Enablement 2011, Banff, Alberta, Canada, 6–7 October 2011.
Gilmour, K.M., S.F. Perry, A.J. Esbaugh, J. Genz, J.R. Taylor, and M. Grosell. 2011. Compensatory regulation of acid-base balance during salinity transfer in rainbow trout (Oncorhynchus mykiss). Journal of Comparative Physiology B: Biochemical, Systemic, and Environmental Physiology, 182: 259–274. http://dx.doi.org/10.1007/s00360-011-0617-8
Godin, M.A., Y. Zhang, J.P. Ryan, T.T. Hoover, and J.G. Bellingham. 2011. Phytoplankton bloom patch center localization by the Tethys autonomous underwater vehicle. OCEANS’11 MTS/IEEE KONA, Hilton Waikoloa Village, Kona, Hawai'i, 19–22 September 2011.
Gray, S.E.C., M.D. DeGrandpre, T.S. Moore, T.R. Martz, G.E. Friederich, and K.S. Johnson. 2011. Applications of in situ pH measurements for inorganic carbon calculations. Marine Chemistry, 125: 82–90. http://dx.doi.org/10.1016/j.marchem.2011.02.005
Graybeal, J., A.W. Isenor, and C. Rueda. 2011. Semantic mediation of vocabularies for ocean observing systems. Computers & Geosciences, 40: 120–131. http://dx.doi.org/10.1016/j.cageo.2011.08.002
Greenberg, J.A., C. Rueda, E.L. Hestir, M.J. Santos, and S.L. Ustin. 2011. Least cost distance analysis for spatial interpolation. Computers & Geosciences, 37: 272–276. http://dx.doi.org/10.1016/j.cageo.2010.05.012
Haddock, S.H.D., and C.W. Dunn. Practical computing for biologists. Sunderland, Massachusetts: Sinauer Associates, 2011.
Helo, C., M. Longpre, N. Shimizu, D.A. Clague, and J. Stix. 2011. Explosive eruptions at mid-ocean ridges driven by CO2-rich magmas. Nature Geoscience, 4: 260–263. http://dx.doi.org/10.1038/ngeo1104
Hill, T.M., C.K. Paull, and R.B. Critser. 2011. Glacial and deglacial seafloor methane emissions from pockmarks on the northern flank of the Storegga Slide complex. Geo-Marine Letters, 32: 73–84. http://dx.doi.org/10.1007/s00367-011-0258-7
Hill, T.M., H.J. Spero, T. Guilderson, M. LaVigne, D. Clague, S. Macalello, and N. Jang. 2011. Temperature and vital effect controls on bamboo coral (Isididae) isotope geochemistry: A test of the “lines method”. Geochemistry, Geophysics, Geosystems, 12: Q04008. http://dx.doi.org/10.1029/2010GC003443
Hobson, B.W., A.D. Sherman, and P.R. McGill. 2011. Imaging and sampling beneath free-drifting icebergs with a remotely operated vehicle. Deep-Sea Research II, 58: 1311–1317. http://dx.doi.org/10.1016/j.dsr2.2010.11.006
Hofmann, A.F., E.T. Peltzer, P.M. Walz, and P.G. Brewer. 2011. Hypoxia by degrees: Establishing definitions for a changing ocean. Deep-Sea Research I, 58: 1212–1226. http://dx.doi.org/10.1016/j.dsr.2011.09.004
Hofmann, G.E., J.E. Smith, K.S. Johnson, U. Send, L.A. Levin, F. Micheli, A. Paytan, N.N. Price, B. Peterson, Y. Takeshita, P.G. Matson, E.D. Crook, K.J. Kroeker, M.C. Gambi, E.B. Rivest, C.A. Frieder, P.C. Yu, and T.R. Martz. 2011. High-frequency dynamics of ocean pH: a multi-ecosystem comparison. PLoS ONE, 6: e28983. http://dx.doi.org/10.1371/journal.pone.0028983
Hoving, H.J.T., S.L. Bush, and B.H. Robison. 2011. A shot in the dark: same-sex sexual behavior in a deep-sea squid. Biology Letters, 8(2): 287–290. http://dx.doi.org/10.1098/rsbl.2011.0680
Hull, P.M., K.J. Osborn, R.D. Norris, and B.H. Robison. 2011. Seasonality and depth distribution of a mesopelagic foraminifer, Hastigerinella digitata, in Monterey Bay, California. Limnology and Oceanography, 56: 562–576. http://dx.doi.org/10.4319/lo.2011.56.2.0562
Johnson, K.S., J.P. Barry, L.J. Coletti, S.E. Fitzwater, H.W. Jannasch, and C.F. Love. 2011. Nitrate and oxygen flux across the sediment-water interface observed by eddy correlation measurements on the open continental shelf. Limnology and Oceanography Methods, 9: 543–553. http://dx.doi.org/10.4319/lom.2011.9.543
Kaufmann, R.S., B.H. Robison, R.E. Sherlock, K.R. Reisenbichler, and K.J. Osborn. 2011. Composition and structure of macrozooplankton and micronekton communities in the vicinity of free-drifting Antarctic icebergs. Deep-Sea Research II, 58: 1469–1484. http://dx.doi.org/10.1016/j.dsr2.2010.11.026
Kecy, C.D., E.T. Peltzer, P.M. Walz, K. Headley, B. Herlien, W. Kirkwood, T. O'Reilly, K.A. Salamy, F. Shane, J. Scholfield, and P.G. Brewer. 2011. Design and development of the CO2 enriched Seawater Distribution System. OCEANS 2011, 2011: 1–8.
Kieft, B., J. Bellingham, M. Godin, B. Hobson, T. Hoover, R. McEwen, and E. Mellinger. 2011. Fault Detection and Failure Prevention on the Tethys Long-Range Autonomous Underwater Vehicle. 17th International Symposium on Unmanned Untethered Submersible Technology 2011, Portsmouth, New Hampshire, 21–24 August 2011.
Kim, E., J.W. Harrison, S. Sudek, M.D.M. Jones, H.M. Wilcox, T.A. Richards, A.Z. Worden, and J.M. Archibald. 2011. Newly identified and diverse plastid-bearing branch on the eukaryotic tree of life. Proceedings of the National Academy of Sciences, 109: 1469–1500. http://dx.doi.org/10.1073/pnas.1013337108
Kirkwood, W.J., E.T. Peltzer, P. Walz, K. Headley, B. Herlien, C.D. Kecy, T. Maughan, T. O'Reilly, K.A. Salamy, F. Shane, J. Scholfield, and P.G. Brewer. 2011. Cabled instrument technologies for ocean acidification research — FOCE (free ocean CO2 enrichment). Underwater Technology, 2011 IEEE Symposium on and 2011 Workshop on Scientific Use of Submarine Cables and Related Technologies, 2011: 1–8. http://dx.doi.org/10.1109/UT.2011.5774089
Klapp, S.A., M.M. Murshed, T. Pape, G. Bohrmann, P. Brewer, and W.F. Kuhs. 2011. Dual hydrate structures sI and sII at the Chapopote Knoll, southern Gulf of Mexico. 7th International Conference on Gas Hydrates, 2011: 10.
Kuhnz, L.A., J.P. Barry, K. Buck, C. Lovera, and P.J. Whaling. Potential impacts of the Monterey Accelerated Research System (MARS) on the seabed and benthic faunal assemblages. Moss Landing, California: Monterey Bay Aquarium Research Institute, 2011.
Kumar, S., S.J. Celorrio, F. Py, D. Khemani, and K. Rajan. 2011. Optimizing hidden Markov models for ocean feature detection. Proceedings of the 24th Florida Artificial Intelligence Research Society (FLAIRS) Conference, Palm Beach, Florida, 18–20 May 2011.
Levin, L.A., M.C. Gambi, J.P. Barry, A. Genin, and S. Thrush. 2011. The Dayton legacy: baselines, benchmarks, climate, disturbance, and proof. Marine Ecology, 32: 261–265. http://dx.doi.org/10.1111/j.1439-0485.2011.00473.x
Maier, K.L., A. Fildani, C.K. Paull, S.A. Graham, T.R. McHargue, D.W. Caress, and M. McGann. 2011. The elusive character of discontinuous deep-water channels: New insights from Lucia Chica channel system, offshore California. Geology, 39: 327–330. http://dx.doi.org/10.1130/G31589.1
Matsumoto, G.I., and T.A. Potts. 2011. Two ways of researching the underwater world. Brooks/Cole Enrichment Module: 1–27.
Mazillo, F.F.M., J.P. Ryan, and M.W. Silver. 2011. Parasitism as a biological control agent of dinoflagellate blooms in the California Current System. Harmful Algae, 10: 763–773. https://doi.org/10.1016/j.hal.2011.06.009
McClain, C.R., J.C. Nekola, L. Kuhnz, and J.P. Barry. 2011. Local-scale faunal turnover on the deep Pacific seafloor. Marine Ecology Progress Series, 422: 193–200. http://dx.doi.org/10.3354/meps08924
McGill, P.R., K.R. Reisenbichler, S.A. Etchemendy, T.C. Dawe, and B.W. Hobson. 2011. Aerial surveys and tagging of free-drifting icebergs using an unmanned aerial vehicle (UAV). Deep-Sea Research II, 58: 1318–1326. http://dx.doi.org/10.1016/j.dsr2.2010.11.007
Messié, M., and F.P. Chavez. 2011. Global modes of sea surface temperature variability in relation to regional climate indices. Journal of Climate, 24: 4314–4331. http://dx.doi.org/10.1175/2011JCLI3941.1
Osborn, K.J., L.A. Kuhnz, I.G. Priede, M. Urata, A.V. Gebruk, and N.D. Holland. 2011. Diversification of acorn worms (Hemichordata, Enteropneusta) revealed in the deep sea. Proceedings of the Royal Society B, 279: 1646–1654. http://dx.doi.org/10.1098/rspb.2011.1916
Osborn, K.J., S.H.D. Haddock, and G.W. Rouse. 2011. Swima (Annelida, Acrocirridae), holopelagic worms from the deep Pacific. Zoological Journal of the Linnean Society, 163: 663–678. http://dx.doi.org/10.1111/j.1096-3642.2011.00727.x
Ottesen, E.A., R. Marin III, C.M. Preston, C.R. Young, J.P. Ryan, C.A. Scholin, and E.F. DeLong. 2011. Metatranscriptomic analysis of autonomously collected and preserved marine bacterioplankton. The ISME Journal, 5: 1881–1895. http://dx.doi.org/10.1038/ismej.2011.70
Paerl, R.W., K.A. Turk, R.A. Beinart, F.P. Chavez, and J.P. Zehr. 2011. Seasonal change in the abundance of Synechococcus and multiple distinct phylotypes in Monterey Bay determined by rbcL and narB quantitative PCR. Environmental Microbiology, 14: 580–593. http://dx.doi.org/10.1111/j.1462-2920.2011.02594.x
Paerl, R.W., K.S. Johnson, R.M. Welsh, A.Z. Worden, F.P. Chavez, and J.P. Zehr. 2011. Differential distributions of Synechococcus subgroups across the California current system. Frontiers in Aquatic Microbiology, 2: 1–22. http://dx.doi.org/10.3389/fmicb.2011.00059
Paull, C.K., D.W. Caress, W. Ussler III, E. Lundsten, and M. Meiner-Johnson 2011. High-resolution bathymetry of the axial channels within Monterey and Soquel submarine canyons, offshore central California. Geosphere, 7: 1077–1101. http://dx.doi.org/10.1130/GES00636.1
Paull, C.K., S. Dallimore, J. Hughes-Clarke, S. Blasco, E. Lundsten, W. Ussler III, D. Graves, A.D. Sherman, K. Conway, H. Melling, S. Vagle, and T. Collett. 2011. Tracking the decomposition of submarine permafrost and gas hydrate under the shelf and slope of the Beaufort Sea. 7th International Conference on Gas Hydrates, 2011: 12.
Pauly, B.D., P. Schiffman, R.A. Zierenberg, and D.A. Clague. 2011. Environmental and chemical controls on palagonitization. Geochemistry, Geophysics, Geosystems, 12: Q12017. http://dx.doi.org/10.1029/2011GC003639
Phohlman, J.W., M. Riedel, I. Novosel, J.E. Bauer, E.A. Canuel, C.K. Paull, R.B. Coffin, K.S. Grabowski, D.L. Kines, R.D. Hyndman, and G.D. Spence. 2011. Evidence and biogeochemical implications for glacially-derived sediments in an active margin cold seep. 7th International Conference on Gas Hydrate, 2011: 12.
Preston, C.M., A. Harris, J.P. Ryan, B. Roman, R. Marin III, S. Jensen, C. Everlove, J. Birch, J.M. Dzenitis, D. Pargett, M. Adachi, K. Turk, J.P. Zehr, and C.A. Scholin. 2011. Underwater application of quantitative PCR on an ocean mooring. PLoS ONE, 6: E22522. http://dx.doi.org/10.1371/journal.pone.0022522
Resing, J.A., K.H. Rubin, R.W. Embley, J.E. Lupton, E.T. Baker, R.P. Dziak, T. Baumberger, M.D. Lilley, J.A. Huber, T.M. Shank, D.A. Butterfield, D.A. Clague, N.S. Keller, S.G. Merle, N.J. Buck, P.J. Michael, A. Soule, D.W. Caress, S.L. Walker, R. Davis, J.P. Cowen, A.L. Reysenbach, and H. Thomas. 2011. Active submarine eruption of boninite in the northeastern Lau Basin. Nature Geoscience, 4: 799–806. http://dx.doi.org/10.1038/ngeo1275
Robison, B.H., M. Vernet, and K.L. Smith Jr. 2011. Algal communities attached to free-drifting, Antarctic icebergs. Deep-Sea Research II, 58: 1451–1456. http://dx.doi.org/10.1016/j.dsr2.2010.11.024
Rouse, G.W., S.K. Goffredi, S.B. Johnson, and R.C. Vrijenhoek. 2011. Not whale-fall specialists, Osedax worms also consume fishbones. Biology Letters, 7: 736–739. http://dx.doi.org/10.1098/rsbl.2011.0202
Ryan, J., D. Greenfield, R. Marin III, C. Preston, B. Roman, S. Jensen, D. Pargett, J. Birch, C. Mikulski, G. Doucette, and C. Scholin. 2011. Harmful phytoplankton ecology studies using an autonomous molecular analytical and ocean observing network. Limnology and Oceanography, 56: 1255–1272. http://dx.doi.org/10.4319/lo.2011.56.4.1255
Ryan, J.P., Y. Zhang, H. Thomas, E.V. Rienecker, R.K. Nelson, and S.R. Cummings. 2011. A high-resolution survey of a deep hydrocarbon plume in the Gulf of Mexico during the 2010 Macondo blowout. Monitoring and Modeling the Deepwater Horizon Oil Spill: A Record-Breaking Enterprise, 195: 63–75. http://dx.doi.org/10.1029/2011GM001106
Saito, M.A., V.V. Bulygin, D.M. Moran, C. Taylor, and C. Scholin. 2011. Examination of microbial proteome preservation techniques applicable to autonomous environmental sample collection. Frontiers in Aquatic Microbiology, 2: 1–10. http://dx.doi.org/10.3389/fmicb.2011.00215
Shaw, T.J., K.L. Smith Jr., C.R. Hexel, R. Dudgeon, A.D. Sherman, M. Vernet, and R.S. Kaufmann. 2011. 234Th-based carbon export around free-drifting icebergs in the Southern Ocean. Deep-Sea Research II, 58: 1384–1391. http://dx.doi.org/10.1016/j.dsr2.2010.11.019
Shaw, T.J., R. Raiswell, C.R. Hexel, H.P. Vu, W.S. Moore, R. Dudgeon, and K.L. Smith Jr. 2011. Input, composition, and potential impact of terrigenous material from free-drifting icebergs in the Weddell Sea. Deep-Sea Research II, 58: 1376–1383. http://dx.doi.org/10.1016/j.dsr2.2010.11.012
Sherlock, R.E., K.R. Reisenbichler, S.L. Bush, K.J. Osborn, and B.H. Robison. 2011. Near-field zooplankton, ice-face biota and proximal hydrography of free-drifting Antarctic icebergs. Deep-Sea Research II, 58: 1457–1468. http://dx.doi.org/10.1016/j.dsr2.2010.11.025
Sherman, A.D., B.W. Hobson, P.R. McGill, R.E. Davis, M.C. McClune, and K.L. Smith Jr. 2011. Lagrangian sediment traps for sampling at discrete depths beneath free-drifting icebergs. Deep-Sea Research II-Topical Studies in oceanography, 58: 1327–1335. http://dx.doi.org/10.1016/j.dsr2.2010.11.008
Shulman, I., M.A. Moline, B. Penta, S. Anderson, M. Oliver, and S.H.D. Haddock. 2011. Observed and modeled bio-optical, bioluminescent, and physical properties during a coastal upwelling event in Monterey Bay, California. Journal of Geophysical Research-Oceans, 116: 1–13. http://dx.doi.org/10.1029/2010JC006525
Siebert, S., M.D. Robinson, S.C. Tintori, F.E. Goetz, R.R. Helm, S.A. Smith, N. Shaner, S.H.D. Haddock, and C.W. Dunn. 2011. Differential gene expression in the Siphonophore Nanomia bijuga (Cnidaria) assessed with multiple next generation sequencing workflows. PLoS ONE, 6: 1–12. http://dx.doi.org/10.1371/journal.pone.0022953
Smith Jr., K.L. 2011. Free-drifting icebergs in the Southern Ocean: An overview. Deep-Sea Research II, 58: 1277–1284.
Smith Jr., K.L., A.D. Sherman, T.J. Shaw, A.E. Murray, M. Vernet, and A.O. Cefarelli. 2011. Carbon export associated with free-drifting icebergs in the Southern Ocean. Deep Sea Research Part II: Topical Studies in Oceanography, 58: 1485–1496. http://dx.doi.org/10.1016/j.dsr2.2010.11.027
Steward, G.F., and C.M. Preston. 2011. Analysis of a viral metagenomic library from 200 m depth in Monterey Bay, California constructed by direct shotgun cloning. Virology Journal, 8: 1–14. http://dx.doi.org/10.1186/1743-422X-8-287
Swan, B.K., M. Martinez-Garcia, C.M. Preston, A. Sczyrba, T. Woyke, D. Lamy, T. Reinthaler, N.J. Poulton, E.D.P. Masland, M. Lluesma Gomez, M.E. Sieracki, E.F. DeLong, G.J. Herndl, and R. Stepanauskas. 2011. Potential for chemolithoautotrophy among ubiquitous bacteria lineages in the dark ocean. Science, 333: 1296–1300. http://dx.doi.org/10.1126/science.1203690
Thaler, A.D., K. Zelnio, W. Saleu, T.F. Schultz, J. Carlsson, C. Cunningham, R.C. Vrijenhoek, and C.L. Van Dover. 2011. The spatial scale of genetic subdivision in populations of Ifremeria nautilei, a hydrothermal-vent gastropod from the southwest Pacific. BMC Evolutionary Biology, 11: 1–12. http://dx.doi.org/10.1186/1471-2148-11-372
Tkacik, D.S., Y. Luna-Cruz, N. Clinton, S. Spak, and J. Ryan. 2011. Atmospheric correction for MASTER image data using localized modelled and observed meteorology and trace gases. Remote Sensing Letters, 3: 201–209. https://doi.org/10.1080/01431161.2010.551550
Toma, D.M., T. O'Reilly, J. del Rio, K. Headley, A. Manuel, A. Broring, and D. Edgington. 2011. Smart sensors for interoperable Smart Ocean Environment. OCEANS 2011, 2011: 1–4. http://dx.doi.org/10.1109/Oceans-Spain.2011.6003654
Treusch, A.H., E. Demir-Hilton, K.L. Vergin, A.Z. Worden, C.A. Carlson, M.G. Donatz, R.M. Burton, and S.J. Giovannoni. 2011. Phytoplankton distribution patterns in the northwestern Sargasso Sea revealed by small subunit rRNA genes from plastids. ISME Journal, 6: 481–492. http://dx.doi.org/10.1038/ismej.2011.117
Woodson, C.B., J.A. Barth, O.M. Cheriton, M.A. McManus, J.P. Ryan, L. Washburn, K.N. Carden, B.S. Cheng, J. Fernandes, L.E. Garske, T.C. Gouhier, A.J. Haupt, K.T. Honey, M.F. Hubbard, A. Iles, L. Kara, M.C. Lynch, B. Mahoney, M. Pfaff, M.L. Pinsky, M.J. Robart, J.S. Stewart, S.J. Teck, and A. True. 2011. Observations of internal wave packets propagating along-shelf in northern Monterey Bay. Geophysical Research Letters, 38: 1–6. http://dx.doi.org/10.1029/2010GL045453
Yoklavich, M., T. Laidig, L. Krigsman, A. Taylor, D. Watters, M. Love, L. Lundsten, and B. Negrete. 2011. A characterization of the coral and sponge community on Piggy Bank seamount in southern California from a survey using a remotely operated vehicle: a report to NOAA Deep-sea Coral Research and Technology Program, August 31, 2011. National Oceanic and Atmospheric Administration, Coral Reef Conservation Program (U.S.), 869: 1–63. https://repository.library.noaa.gov/view/noaa/869
Zehr, J.P., J. Robidart, and C. Scholin. 2011. Global environmental change demands a deeper understanding of how marine microbes drive global ecosystems. Microbe Magazine, 6: 169–175.
Zhang, X., K.C. Hester, W. Ussler III, P.M. Walz, E.T. Peltzer, and P.G. Brewer. 2011. In situ Raman-based measurements of high dissolved methane concentrations in hydrate-rich ocean sediments. Geophysical Research Letters, 38: L08605. http://dx.doi.org/10.1029/2011GL047141
Zhang, X., W.J. Kirkwood, K.C. Hester, P.M. Walz, W. Ussler III, E.T. Peltzer, F. Shane, and P. Brewer. 2011. In situ Raman probe for quantitative observation of sediment pore waters in the deep ocean — development and applications. OCEANS 2011, 2011: 8.
Zhang, Y., M. Godin, J.G. Bellingham, and J.P. Ryan. 2011. Ocean front detection and tracking by an autonomous underwater vehicle. OCEANS 2011, 2011: 1–4.
Zhang, Y., R.S. McEwen, J.P. Ryan, J.G. Bellingham, and H. Thomas. 2011. A peak-capture algorithm used on an autonomous underwater vehicle in the 2010 Gulf of Mexico oil spill response scientific survey. Journal of Field Robotics, 28: 484–496. http://dx.doi.org/10.1002/rob.20399
Alford, M.H., R.C. Lien, H. Simmons, J. Klymak, S.R. Ramp, Y.J. Yang, T.Y. Tang, D. Farmer, and M.H. Chang. 2010. Speed and evolution of nonlinear internal waves transitioning the south China Sea . Journal of Physical Oceanography, 40: 1338–1355.
Audzijonyte, A., and R.C. Vrijenhoek. 2010. Three nuclear genes for phylogenetic, SNP and population genetic studies of molluscs and other invertebrates. Molecular Ecology Resources, 10: 200–204. http://dx.doi.org/10.1111/j.1755-0998.2009.02737.x
Audzijonyte, A., and R.C. Vrijenhoek. 2010. When gaps really are gaps: Statistical phylogeography of hydrothermal vent invertebrates. Evolution, 64: 2369–2384. http://dx.doi.org/10.1111/j.1558-5646.2010.00987.x
Barry, J., et al. 2010. "Frequently asked questions about ocean acidification." U.S. Ocean Carbon and Biogeochemistry, European Project on Ocean Acidification, 19 March 2010.
Barry, J., L. Kuhnz, K. Buck, C. Lovera, and P.J. Whaling. 2010. Potential impacts of the MARS cable on the seabed and benthic faunal assemblages. Report to: Monterey Bay National Marine Sanctuary.
Barry, J.P. 2010. Marine organisms and ecosystems in a high CO2 ocean, and an overview of recommendations from the NRC committee report on development of an integrated science strategy for ocean acidification monitoring, research, and impacts assessment. Daily Digest: U.S. Senate Hearing on the Environmental and Economic impacts of Ocean Acidification, April 22, 2010: D423.
Barry, J.P., J.M. Hall-Spencer, and T. Tyrrell. In situ perturbation experiments: Natural venting sites, spatial/temporal gradients in ocean pH, manipulative in situ pCO2 perturbations. Best Practices for Ocean Acidification Research, edited by U. Riebesell, 123–136. Luxembourg: Publications Office of the European Union, 2010.
Barry, J.P., T. Tyrrell, L. Hansson, G.K. Plattner, and J.P. Gattuso. Atmospheric CO2 targets for ocean acidification perturbation experiments. Best Practices for Ocean Acidification, edited by U. Riebesell, 53–63. Luxembourg: Publications Office of the European Union, 2010.
Bayha, K.M., M.N. Dawson, A.G. Collins, M.S. Barbeitos, and S.H.D. Haddock. 2010. Evolutionary relationships among scyphozoan jellyfish families based on complete taxon sampling and phylogenetic analyses of 18S and 28S ribosomal DNA. Integrative and Comparative Biology, 50: 436–455. http://dx.doi.org/10.1093/icb/icq074
Bellingham, J.G. 2010. Autonomous underwater vehicles. Measurement Techniques, Platforms & Sensors: 162–173.
Bellingham, J.G., Y. Zhang, J.E. Kerwin, J. Erikson, B. Hobson, B. Kieft, M. Godin, R. McEwen, T. Hoover, J. Paul, A. Hamilton, J. Franklin, and A. Banka. 2010. Efficient propulsion for the Tethys long-range autonomous underwater vehicle. Proceedings of the Oceanic Engineering Society / Institute of Electrical and Electronics Engineers Autonomous Underwater Vehicle Conference, Monterey, California, 1–3 September 2010.