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2012

Das, J., F. Py, T. Maughan, T. O'Reilly, M. Messié, J. Ryan, G.S. Sukhatme, and K. Rajan. 2012. Simultaneous tracking and sampling of dynamic oceanographic features with AUVs and drifters. Experimental Robotics, 79: 541–555. https://doi.org/10.1007/978-3-642-28572-1_37

Das, J., J. Harvey, J. Ryan, F. Py, R. Graham, K. Rajan, and G. Sukhatme. 2012. Multi-stage Bayesian regression for adaptive sampling of marine phenomena. RSS 2012 Workshop on Robotics for Environmental Monitoring, Sydney, NSW, Australia, 9–13 July 2012.

Demir-Hilton, E., D.A. Hutchins, K.J. Czymmek, and K.J. Coyne. 2012. Description of Viridilobus marinus (gen. et sp. nov.), a new raphidophyte from Delaware's Inland Bays. Journal of Phycology, 48: 1220–1231. http://dx.doi.org/10.1111/j.1529-8817.2012.01212.x

Doney, S.C., M. Ruckelshaus, J.E. Duffy, J.P. Barry, F. Chan, C.A. English, H.M. Galindo, J.M. Grebmeier, A.B. Hollowed, N. Knowlton, J. Polovina, N.N. Rabalais, W.J. Sydeman, and L.D. Talley. 2012. Climate change impacts on marine ecosystems. Annual Review of Marine Science, 4: 11–37. http://dx.doi.org/10.1146/annurev-marine-041911-111611

Edwards, K.J., C.G. Wheat, B.N. Orcutt, S. Hulme, K. Becker, H. Jannasch, A. Haddad, T. Pettigrew, W. Rhinehart, K. Grigar, W. Bach, W. Kirkwood, and A. Klaus. 2012. Design and deployment of borehole observatories and experiments during IODP Expedition 336, Mid-Atlantic Ridge flank at North Pond. Proceedings of the Integrated Ocean Drilling Program, 336: 1–43. http://dx.doi.org/10.2204/iodp.proc.336.109.2012

Fischer, E.V., K.R.M. Mackey, D.F. Cusack, L.R.G. DeSantis, L. Hartzell-Nichols, J.A. Lutz, J. Melbourne-Thomas, R. Meyer, D.A. Riveros-Iregui, C.J.B. Sorte, J.R. Taylor, and S.A. White. 2012. Is pre-tenure interdisciplinary research a career risk? EOS, 93: 311–312.

Fisher, A., T. Tsuji, K. Petronotis, C.G. Wheat, K. Becker, J.F. Clark, J. Cowen, K. Edwards, and H. Jannasch. 2012. IODP Expedition 327 and Atlantis Expedition AT 18-07: Observatories and Experiments on the Eastern Flank of the Juan de Fuca Ridge. Scientific Drilling Journal, 13: 4–11. http://dx.doi.org/10.2204/​iodp.sd.13.01.2011

Frolov, S., J. Paduan, M. Cook, and J. Bellingham. 2012. Improved statistical prediction of surface currents based on historic HF-radar observations. Ocean Dynamics, 62: 1111–1122. http://dx.doi.org/10.1007/s10236-012-0553-5

Frolov, S., J.P. Ryan, and F.P. Chavez. 2012. Predicting euphotic-depth-integrated chlorophyll-a from discrete depth and satellite-observable chlorophyll-a off central California . Journal of Geophysical Research, 117(C5): 1–7. http://dx.doi.org/10.1029/2011JC007322

García-Olaya, A., F. Py, J. Das, and K. Rajan. 2012. An online utility-based approach for sampling dynamic ocean fields. IEEE Journal of Oceanic Engineering, 37: 185–203. http://dx.doi.org/10.1109/JOE.2012.2183934

Gomez, F., A. Montecinos, S. Hormazabal, L.A. Cubillos, M. Correa-Ramirez, and F.P. Chavez. 2012. Impact of spring upwelling variability off southern-central Chile on common sardine (Strangomera bentincki) recruitment. Fisheries Oceanography, 21: 405–414. http://dx.doi.org/10.1111/j.1365-2419.2012.00632.x

González, J., I. Masmitjà, S. Gomáriz, E. Molino, J. del Río, A. Mànuel, J. Busquets, A. Guerrero, F. López, M. Carreras, D. Ribas, A. Carrera, C. Candela, P. Ridao, J. Sousa, P. Calado, J. Pinto, A. Sousa, R. Martins, D. Borrajo, A. Olaya, B. Garau, I. González, S. Torres, K. Rajan, M. McCann, and J. Gilabert. 2012. AUV based multi-vehicle collaboration: Salinity studies in Mar Menor coastal lagoon. Proceedings of the IFAC Workshop on- Navigation, Guidance and Control of Underwater Vehicles, 45(5): 287–292. http://dx.doi.org/10.3182/20120410-3-PT-4028.00048

Gottlieb, J., R. Graham, T. Maughan, F. Py, G. Elkaim, and K. Rajan. 2012. An experimental momentum-based front detection method for autonomous underwater vehicles. In: Proceedings of the IEEE International Conference on Robotics and Automation, 2012: 5322–5327. http://dx.doi.org/10.1109/ICRA.2012.6225115

Graham, R., F. Py, J. Das, D. Lucas, T. Maughan, and K. Rajan. 2012. Exploring space-time tradeoffs in autonomous sampling for marine robotics. 13th International Symposium on Experimental Robotics, Québec, Canada, 18–21 June 2012.

Haines, S., V. Subramanian, E. Mayorga, D. Snowden, R. Ragsdale, C. Rueda, and M. Howard. 2012. IOOS vocabulary and ontology strategy for observed properties. Oceans 2012, 2012: 1–9. http://dx.doi.org/10.1109/OCEANS.2012.6405083

Hales, B., P.G. Strutton, M. Saraceno, R. Letelier, T. Takahashi, R. Feely, C. Sabine, and F. Chavez. 2012. Satellite-based prediction of pCO2 in coastal waters of the eastern North Pacific. Progress in Oceanography, 103: 1–15. http://dx.doi.org/10.1016/j.pocean.2012.03.001

Harvey, J., Y. Zhang, and J. Ryan. 2012. AUVs for ecological studies of marine plankton communities. Sea Technology Magazine, 53: 51–54.

Harvey, J.B.J., J.P. Ryan, R. Marin III, C.M. Preston, N. Alvarado, C.A. Scholin, and R.C. Vrijenhoek. 2012. Robotic sampling, in situ monitoring and molecular detection of marine zooplankton. Journal of Experimental Marine Biology and Ecology, 413: 60–70. http://dx.doi.org/10.1016/j.jembe.2011.11.022

Hill, T.M., M. LaVigne, H.J. Spero, T. Guilderson, B. Gaylord, and D. Clague. 2012. Variations in seawater Sr/Ca recorded in deep-sea bamboo corals. Paleoceanography, 27: 1–7. http://dx.doi.org/10.1029/2011PA002260

Hobson, B.W., J.G. Bellingham, B. Kieft, R. McEwen, M. Godin, and Y. Zhang. 2012. Tethys-class long range AUVs-extending the endurance of propeller-driven cruising AUVs from days to weeks. Autonomous Underwater Vehicles (AUV), 2012 IEEE/OES, 2012: 1–8. http://dx.doi.org/10.1109/AUV.2012.6380735

Holland, N.D., K.J. Osborn, and L.A. Kuhnz. 2012. A new deep-sea species of harrimaniid enteropneust (Hemichordata). Proceedings of the Biological Society of Washington, 125: 228–240.

Holland, N.D., L.A. Kuhnz, and K.J. Osborn. 2012. Morphology of a new deep-sea acorn worm (class Enteropneusta, phylum Hemichordata): a part-time demersal drifter with externalized ovaries. Journal of Morphology, 273: 661–671. http://dx.doi.org/10.1002/jmor.20013

Hoving, H.J.T., and M. Vecchione. 2012. Mating behaviour of a deep-sea squid revealed by in situ videography and the study of archived specimens. Biological Bulletin, 223: 263–267.

Johnsen, S., T.M. Frank, S.H.D. Haddock, E.A. Widder, and C.G. Messing. 2012. Light and vision in the deep-sea benthos: I. Bioluminescence at 500–1000 m depth in the Bahamian Islands. Journal of Experimental Biology, 215: 3335–3343. http://doi.org/10.1242/jeb.072009

Jolliff, J.K., R.W. Gould Jr., B. Penta, W.J. Teague, S. DeRada, F.P. Chavez, and R.A. Arnone. 2012. Water mass bio-optical properties in the Monterey Bay region: Fluorescence-based inference of shifts in phytoplankton photophysiology. Journal of Geophyiscal Research: Oceans, 117: 1–16. http://dx.doi.org/10.1029/2011JC007568

Kahn, A.S., H.A. Ruhl, and K.L. Smith. 2012. Temporal changes in deep-sea sponge populations are correlated to changes in surface climate and food supply. Deep Sea Research I, 70: 36–41. http://dx.doi.org/10.1016/j.dsr.2012.08.001

Kelley, D.S., S.M. Carbotte, D.W. Caress, D.A. Clague, J.R. Delaney, J.B. Gill, H. Hadaway, J.F. Holden, E.E.E. Hooft, J.P. Kellogg, M.D. Lilley, M. Stoermer, D. Toomey, R. Weekly, and W.S.D. Wilcock. 2012. Endeavour segment of the Juan de Fuca ridge: one of the most remarkable places on Earth. Oceanography, 25: 44–61. http://dx.doi.org/10.5670/oceanog.2012.03

Kitts, C., P. Mahacek, T. Adamek, K. Rasal, V. Howard, S. Li, A. Badaoui, W. Kirkwood, G. Wheat, and S. Hulme. 2012. Field operation of a robotic small waterplane area twin hull boat for shallow-water bathymetric characterization. Journal of Field Robotics, 29: 924–938. http://dx.doi.org/10.1002/rob.21427

Klapp, S.A., F. Enzmann, P. Walz, T. Huthwelker, J. Tuckermann, J.O. Schwarz, T. Pape, E.T. Peltzer, R. Mokso, D. Wangner, F. Marone, M. Kersten, G. Bohrmann, W.F. Kuhs, M. Stampanoni, and P.G. Brewer. 2012. Microstructure characteristics during hydrate formation and dissociation revealed by X-ray tomographic microscopy. Geo-Marine Letters, 32: 555–562. http://dx.doi.org/10.1007/s00367-012-0276-0

Kline, D.I., L. Teneva, K. Schneider, T. Miard, A. Chai, M. Marker, K. Headley, B. Opdyke, M. Nash, M. Valetich, J.K. Caves, B.D. Russell, S.D. Connell, W.J. Kirkwood, P. Brewer, E. Peltzer, J. Silverman, K. Caldeira, R.B. Dunbar, J.R. Koseff, S.G. Monismith, B.G. Mitchel, S. Dove, and O. Hoegh-Guldberg. 2012. A short-term in situ CO2 enrichment experiment on Heron Island (GBR). Scientific Reports, 2: 413. http://dx.doi.org/10.1038/srep00413

Lee, W.L., H.M. Reiswig, W.C. Austin, and L. Lundsten. 2012. An extraordinary new carnivorous sponge, Chondrocladia lyra, in the new subgenus Symmetrocladia (Demospongiae, Cladorhizidae), from off of northern California, USA. Invertebrate Biology, 131: 259–284. http://dx.doi.org/10.1111/ivb.12001

Levin, L.A., V.J. Orphan, G.W. Rouse, A.E. Rathburn, W. Ussler III, G.S. Cook, S.K. Goffredi, E.M. Perez, A. Waren, B.M. Grupe, G. Chadwick, and B. Strickrott. 2012. A hydrothermal seep on the Costa Rica margin: middle ground in a continuum of reducing ecosystems. Proceedings of the Royal Society B, 279: 2580–2588. http://dx.doi.org/10.1098/rspb.2012.0205

Lin, Y.C., T. Campbell, C.C. Chung, G.C. Gong, K.P. Chiang, and A.Z. Worden. 2012. Distribution patterns and phylogeny of marine stramenopiles in the North Pacific Ocean. Applied and Environmental Microbiology, 78: 3387–3399. http://dx.doi.org/10.1128/AEM.06952-11

Lundsten, L., S.B. Johnson, G.M. Calliet, A.P. DeVogelaere, and D.A. Clague. 2012. Morphological, molecular, and in situ behavioral observations of the rare deep-sea anglerfish Chaunacops coloratus (Garman, 1899), order Lophiiformes, in the eastern North Pacific. Deep Sea Research I, 68: 46–53. http://dx.doi.org/10.1016/j.dsr.2012.05.012

Mackey, K.R.M., C.E. Mioni, J.P. Ryan, and A. Paytan. 2012. Phosphorus cycling in the red tide incubator region of Monterey Bay in response to upwelling. Frontiers in Microbiology, 3: 1–14. http://dx.doi.org/10.3389/fmicb.2012.00033

Maier, K.L., A. Fildani, C.K. Paull, T.R. McHargue, S.A. Graham, and D.W. Caress. 2012. Deep-sea channel evolution and stratigraphic architecture from inception to abandonment from high-resolution autonomous underwater vehicle surveys offshore central California. Sedimentology, 60(4): 935–960. http://dx.doi.org/10.1111/j.1365-3091.2012.01371.x

Maier, K.L., A. Fildani, T.R. McHargue, C.K. Paull, S.A. Graham, and D.W. Caress. 2012. Deep-marine punctuated channel migration: High-resolution subsurface data from the Lucia Chica channel system, offshore California. Journal of Sedimentary Research (SEPM), 82: 1–8.

McGillivary, P., K. Rajan, J.B. de Sousa, F. Leroy, and R. Martins. 2012. Integrating autonomous underwater vessels, surface vessels and aircraft as persistent surveillance components of ocean observing studies. In: Proceedings of Oceanic Engineering Society/IEEE Autonomous Underwater Vehicles, 2012: 1–5. http://dx.doi.org/10.1109/AUV.2012.6380734

Messié, M., and F.P. Chavez. 2012. A global analysis of ENSO synchrony: The oceans' biological response to physical forcing. Journal of Geophyiscal Research, 117(C9): 1–19. http://dx.doi.org/10.1029/2012JC007938

Moeseneder, M.M., K.L. Smith Jr., H.A. Ruhl, D.O.B. Jones, U. Witte, and J.I. Prosser. 2012. Temporal and depth-related differences in prokaryotic communities in abyssal sediments associated with particulate organic carbon flux. Deep Sea Research I, 70: 26–35. http://dx.doi.org/10.1016/j.dsr.2012.07.010

Monier, A., R.M. Welsh, C. Gentemann, G. Weinstock, E. Sodergren, E.V. Armbrust, J.A. Eisen, and A.Z. Worden. 2012. Phosphate transporters in marine phytoplankton and their viruses: Cross-domain commonalities in viral-host gene exchanges. Environmental Microbiology, 14: 162–176. http://dx.doi.org/10.1111/j.1462-2920.2011.02576.x

Patterson, J., J. Thomas, L. Rosenfeld, J. Newton, L. Hazard, J. Scianna, R. Kudela, E. Mayorga, C. Cohen, M. Cook, M. Otero, and J. Adelaars. 2012. Addressing ocean and coastal issues at the West Coast scale through regional ocean observing system collaboration. Oceans 2012, 2012: 1–8. http://dx.doi.org/10.1109/OCEANS.2012.6404937

Paull, C.K., D.W. Caress, E. Lundsten, R. Gwiazda, K. Anderson, M. McGann, J. Conrad, B. Edwards, and E.J. Sumner. 2012. Anatomy of the La Jolla Submarine Canyon system; offshore southern California. Marine Geology, 335: 16–34. http://dx.doi.org/10.1016/j.margeo.2012.10.003

Pfeil, B., A. Olsen, D.C.E. Bakker, S. Hankin, H. Koyuk, A. Kozyr, J. Malczyk, A. Manke, N. Metzl, C.L. Sabine, J. Akl, S.R. Alin, R.G.J. Bellerby, A. Borges, J. Boutin, P.J. Brown, W.J. Cai, F.P. Chavez, A. Chen, C. Cosca, A.J. Fassbender, R.A. Feely, M. González-Dávila, C. Goyet, N. Hardman-Mountford, C. Heinze, M. Hood, M. Hoppema, C.W. Hunt, D. Hydes, M. Ishii, T. Johannessen, S.D. Jones, R.M. Key, A. Körtzinger, P. Landschützer, S.K. Lauvset, N. Lefèvre, A. Lenton, A. Lourantou, L. Merlivat, T. Midorikawa, L. Mintrop, C. Miyazaki, A. Murata, A. Nakadate, Y. Nakano, S. Nakaoka, Y. Nojiri, A.M. Omar, X.A. Padin, G.H. Park, K. Paterson, F.F. Perez, D. Pierrot, A. Poisson, A.F. Ríos, J.M. Santana-Casiano, J. Salisbury, V.V.S.S. Sarma, R. Schlitzer, B. Schneider, U. Schuster, R. Sieger, I. Skjelvan, T. Steinhoff, T. Suzuki, T. Takahashi, K. Tedesco, M. Telszewski, H. Thomas, B. Tilbrook, J. Tjiputra, D. Vandemark, T. Veness, R. Wanninkhof, A.J. Watson, R. Weiss, C.S. Wong, and H. Yoshikawa-Inoue. 2012. A uniform, quality controlled Surface Ocean CO2 Atlas (SOCAT). Earth System Science Data Discussions, 5: 735–780. http://dx.doi.org/10.5194/essdd-5-735-2012

Pinto, J., J.B. de Sousa, F. Py, and K. Rajan. 2012. Experiments with deliberative planning on autonomous underwater vehicles. IROS 2012 Workshop on Robotics for Environmental Monitoring, Vilamoura, Algarve, Portugal, 7–12 October 2012.

Powers, M.L., A.G. McDermott, N. Shaner, and S.H.D. Haddock. 2012. Expression and characterization of the calcium-activated photoprotein from the ctenophore Bathocyroe fosteri: Insights into light-sensitive photoproteins. Biochemical and Biophysical Research Communications, 431(2): 360–366. http://dx.doi.org/10.1016/j.bbrc.2012.12.026

Py, F., and K. Rajan. 2012. Towards Distributed Decision-Making in Situated Agents. Conference on Advances in Cognitive Systems, Palo Alto, California, 6–8 December 2012.

Rago, T.A., R. Michisaki, B. Marinovic, and M. Blum. 2012. Physical, Nutrient, and Biological Measurements of Coastal Waters off Central California in March 2012. Calhoun, 63.

Rajan, K., and F. Py. T-REX: Partitioned inference for AUV mission control. In Further Advances in Unmanned Marine Vehicles, edited by G.N. Roberts and R. Sutton, 171–199. London, Institution of Electrical Engineers: 2012. http://dx.doi.org/10.1049/PBCE077E_ch9

Robidart, J.C., C.M. Preston, R.W. Paerl, K.A. Turk, A.C. Mosier, C.A. Francis, C.A. Scholin, and J.P. Zehr. 2012. Seasonal Synechococcus and Thaumarchaeal population dynamics examined with high resolution with remote in situ instrumentation. The ISME Journal, 6: 513–523. http://dx.doi.org/10.1038/ismej.2011.127

Rosenfeld, L., Y. Chao, and R. Signell. 2012. IOOS modeling subsystem: vision and implementation strategy. Integrated Ocean Observing System Summit, Herndon, Virginia, 13–16 November 2012.

Rubin, K.H., S.A. Soule, W.W. Chadwick Jr., D.J. Fornari, D.A. Clague, R.W. Embley, E.T. Baker, M.R. Perfit, D.W. Caress, and R.P. Dziak. 2012. Volcanic eruptions in the deep sea. Oceanography, 25: 142–157. http://dx.doi.org/10.5670/oceanog.2012.12

Ryan, H.F., J.E. Conrad, C.K. Paull, and M. McGann. 2012. Slip rate on the San Diego Trough Fault Zone, inner California Borderland, and the 1986 Oceanside earthquake swarm revisited. Bulletin of the Seismological Society of America, 102: 2300–2312. http://dx.doi.org/10.1785/0120110317

Sabine, C.L., S. Hankin, H. Koyuk, D.C.E. Bakker, B. Pfeil, A. Olsen, N. Metzl, A. Kozyr, A. Fassbender, A. Manke, J. Malczyk, J. Akl, S.R. Alin, R.G.J. Bellerby, A. Borges, J. Boutin, P.J. Brown, W.J. Cai, F.P. Chavez, A. Chen, C. Cosca, R.A. Feely, M. González-Dávila, C. Goyet, N. Hardman-Mountford, C. Heinze, M. Hoppema, C.W. Hunt, D. Hydes, M. Ishii, T. Johannessen, R.M. Key, A. Körtzinger, P. Landschützer, S.K. Lauvset, N. Lefèvre, A. Lenton, A. Lourantou, L. Merlivat, T. Midorikawa, L. Mintrop, C. Miyazaki, A. Murata, A. Nakadate, Y. Nakano, S. Nakaoka, Y. Nojiri, A.M. Omar, X.A. Padin, G.H. Park, K. Patterson, F.F. Perez, D. Pierrot, A. Poisson, A.F. Ríos, J. Salisbury, J.M. Santana-Casiano, V.V.S.S. Sarma, R. Schlitzer, B. Schneider, U. Schuster, R. Sieger, I. Skjelvan, T. Steinhoff, T. Suzuki, T. Takahashi, K. Tedesco, M. Telszewski, H. Thomas, B. Tilbrook, D. Vandemark, T. Veness, A.J. Watson, R. Weiss, C.S. Wong, and H. Yoshikawa-Inoue. 2012. Surface Ocean CO2 Atlas (SOCAT) gridded data products. Earth System Science Data Discussions, 5: 781–804. http://dx.doi.org/10.5194/essdd-5-781-2012

Salathé, R.M., and R.C. Vrijenhoek. 2012. Temporal variation and lack of host specificity among bacterial endosymbionts of Osedax bone worms (Polychaeta: Siboglinidae). BMC Evolutionary Biology, 12: 189. http://dx.doi.org/10.1186/1471-2148-12-189

Schnitzler, C.E., K. Pang, M.L. Powers, A.M. Reitzel, J.F. Ryan, D. Simmons, T. Tada, M. Park, J. Gupta, S.Y. Brooks, R.W. Blakesley, S. Yokoyama, S.H.D. Haddock, M.Q. Martindale, and A.D. Baxevanis. 2012. Genomic organization, evolution, and expression of photoprotein and opsin genes in Mnemiopsis leidyi: a new view of ctenophore photocytes. BMC Biology, 10: 1–26. http://dx.doi.org/10.1186/1741-7007-10-107

Secor, S.M., J.R. Taylor, and M. Grosell. 2012. Selected regulation of gastrointestinal acid-base secretion and tissue metabolism for the diamondback water snake and Burmese python. Journal of Experimental Biology, 215: 185–196. http://dx.doi.org/10.1242/jeb.056218

Shulman, I., B. Penta, M.A. Moline, S.H.D. Haddock, S. Anderson, M.J. Oliver, and P. Sakalaukus. 2012. Can vertical migrations of dinoflagellates explain observed bioluminescence patterns during an upwelling event in Monterey Bay, California?. Journal of Geophysical Research, 117: C01016. http://dx.doi.org/10.1029/2011JC007480

Sumner, E.J., P.J. Talling, L.A. Amy, R.B. Wynn, C.J. Stevenson, and M. Frenz. 2012. Facies architecture of individual basin-plain turbidites: Comparison with existing models and implications for flow processes. Sedimentology, 59: 1850–1887. http://dx.doi.org/10.1111/j.1365-3091.2012.01329.x

Talling, P.J., G. Malgesini, E.J. Sumner, L.A. Amy, F. Felletti, G. Blakbourn, C. Nutt, C. Wilcox, I.C. Harding, and S. Akbari. 2012. Planform geometry, stacking pattern, and extrabasinal origin of low strength and intermediate strength cohesive debris flow deposits in the Marnoso-arenacea Formation, Italy. Geosphere, 8: 1207–1230. http://dx.doi.org/10.1130/GES00734.1

Vernet, M., K.L. Smith Jr., A.O. Cefarelli, J.J. Helly, R.S. Kaufmann, H. Lin, D.G. Long, A.E. Murray, B.H. Robison, H.A. Ruhl, T.J. Shaw, A.D. Sherman, J. Sprintall, G.R. Stephenson Jr., K.M. Stuart, and B.S. Twining. 2012. Islands of ice: Influence of free-drifting Antarctic icebergs on pelagic marine ecosystems. Oceanography, 25: 38–39. http://dx.doi.org/10.5670/oceanog.2012.72

Vrijenhoek, R.C. Fitness loss and genetic rescue in stream-dwelling topminnows. In Conservation and the Genetics of Populations, 2nd Edition, edited by F.W. Allendorf, G. Luikart, S.N. Aitken, 313. West Sussex, UK, Wiley-Blackwell: 2012.

Weiss-Penzias, P.S., C. Ortiz Jr., R.P. Acosta, W. Heim, J.P. Ryan, D. Fernandez, J.L. Collett Jr., and A.R. Flegal. 2012. Total and monomethyl mercury in fog water from the central California coast. Geophysical Research Letters, 39: 1–5. http://dx.doi.org/10.1029/2011GL050324

Wheat, C.G., K.J. Edwards, T. Pettigrew, H.W. Jannasch, K. Becker, E.E. Davis, H. Villinger, and W. Bach. 2012. CORK-lite: bringing legacy boreholes back to life. Scientific Drilling Journal, 14: 39–43. http://dx.doi.org/10.2204/iodp.sd.14.05.2012

Worden, A.Z., J. Janouskovek, D. McRose, A. Engman, R.M. Welsh, S. Malfatti, S.G. Tringe, and P.J. Keeling. 2012. Global distribution of a wild alga revealed by targeted metagenomics. Current Biology, 22: R675–R677. http://dx.doi.org/10.1016/j.cub.2012.07.054

Zhang, H., and M.P. Hare. 2012. Identifying and reducing AFLP genotyping error: an example of tradeoffs when comparing population structure in broadcast spawning versus brooding oysters. Heredity, 108: 616–625. http://dx.doi.org/10.1038/hdy.2011.132

Zhang, X., W.J. Kirkwood, P.M. Walz, E.T. Peltzer, and P.G. Brewer. 2012. A review of advances in deep-ocean Raman spectroscopy. Applied Spectroscopy, 66: 237–249. http://dx.doi.org/10.1366/11-06539

Zhang, Y., J.G. Bellingham, M.A. Godin, and J.P. Ryan. 2012. Using an autonomous underwater vehicle to track the thermocline based on peak-gradient detection. IEEE Journal of Oceanic Engineering, 37: 544–553. http://dx.doi.org/10.1109/JOE.2012.2192340

Zhang, Y., J.P. Ryan, J.G. Bellingham, J.B.J. Harvey, and R.S. McEwen. 2012. Autonomous detection and sampling of water types and fronts in a coastal upwelling system by an autonomous underwater vehicle. Limnology and Oceanography: Methods, 10: 934–951. http://dx.doi.org/10.4319/lom.2012.10.934

Zhang, Y., M.A. Godin, J.G. Bellingham, and J.P. Ryan. 2012. Using an autonomous underwater vehicle to track a coastal upwelling front. IEEE Journal of Oceanic Engineering, 37: 338–347. http://dx.doi.org/10.1109/JOE.2012.2197272

Zhu, Z., T.W. Kim, and J.C. Choe. 2012. Is female preference for large sexual ornaments due to the bias to escape predation risk? BMC Evolutionary Biology, 12: 1–7. http://dx.doi.org/10.1186/1471-2148-12-33

2011

Adams, L.G., and G.I. Matsumoto. 2011. The benefits and challenges of using real-time data in the classroom: Perspectives from the students, educators, and researchers. Marine Technology Society Journal, 45: 55–58.

Barry, J.P., S. Widdicombe, and J.M. Hall-Spencer. Effects of ocean acidification on marine biodiversity and ecosystem function. In Ocean Acidification, edited by J.P. Gattuso, L. Hansson, 192–209. Oxford, UK, Oxford University Press: 2011.

Becker, M., D. Crichton, E. Deelman, Y. Gil, T. Harmon, S. Granger, Q. Guo, P. Hanson, A. Hofmann, B. Jones, C. Knoblock, M. McCann, T. Stough, P. Szekely, R. Utz, and S. Villamizar. 2011. Information Sciences Institute Technical Report Number ISI-TR-674. Workshop on Aquatic Ecosystem Sustainability, 2011: 34.

Bertrand, A., A. Chaigneau, S. Peraltilla, J. Ledesma, M. Graco, F. Monetti, and F.P. Chavez. 2011. Oxygen: A fundamental property regulating pelagic ecosystem structure in the Coastal Southeastern Tropical Pacific. PLoS ONE, 6: E29558. http://dx.doi.org/10.1371/journal.pone.0029558

Bolstad, K.S.R., and H.J.T. Hoving. 2011. Spermatangium structure and implantation sites in onychoteuthid squid (Cephalopoda: Oegopsida). Marine Biodiversity Records, 4: E5. http://dx.doi.org/10.1017/S175526721000120X

Brewer, P.G., W. Ussler III, E.T. Peltzer, P. Walz, W. Kirkwood, and K.C. Hester. 2011. Accurate in situ observation of deep-sea sediment dissolved methane profiles in hydrate bearing provinces. 7th International Conference on Gas Hydrates, Edinburgh, Scotland, 17–21 July 2011.

Caress, D.W., and D.N. Chayes. 2011. MB-System Version 5.3.1909. Open source software distributed from the MBARI and L-DEO web sites.

Castro, C.G., C.A. Collins, J.T. Pennington, D. Zuniga, and F.P. Chavez. 2011. Spatial distribution and offshore export of total organic carbon along the eastern boundary of the Subtropical North Pacific. Advances in Oceanography and Limnology, 2: 93–106. http://dx.doi.org/10.1080/19475721.2011.626941

Cazenave, F., R. Zook, D. Carroll, M. Flagg, and S. Kim. 2011. Development of the ROV SCINI and deployment in McMurdo Sound, Antarctica. Journal of Ocean Technology, 6: 39–58.

Cazenave, F., Y. Zhang, E. McPhee-Shaw, J.G. Bellingham, and T.P. Stanton. 2011. High-resolution surveys of internal tidal waves in Monterey Bay, California, using an autonomous underwater vehicle. Limnology and Oceanography: Methods, 9: 571–581. http://dx.doi.org/10.4319/lom.2011.9.571

Ceballos, A., S. Bensalem, A. Cesta, L. de Silva, S. Fratini, F. Ingrand, J. Ocón, A. Orlandini, F. Py, K. Rajan, R. Rasconi, and M. van Winnendael. 2011. A goal-oriented autonomous controller for space exploration. 11th Symposium on Advanced Space Technologies in Robotics and Automation (ASTRA 2011), Noordwijk, Netherlands, 12–14 April 2011.

Clague, D.A., J.B. Paduan, D.W. Caress, H. Thomas, W.W. Chadwick Jr., and S.G. Merle. 2011. Volcanic morphology of West Mata Volcano, NE Lau Basin, based on high-resolution bathymetry and depth changes. Geochemistry, Geophysics, Geosystems, 12: QOAF03. http://dx.doi.org/10.1029/2011GC003791

Clague, G.E., W.J. Jones, J.B. Paduan, D.A. Clague, and R.C. Vrijenhoek. 2011. Phylogeography of Acesta clams from submarine seamounts and escarpments along the western margin of North America. Marine Ecology, 33: 75–87. http://dx.doi.org/10.1111/j.1439-0485.2011.00458.x

Coykendall, D.K., S.B. Johnson, S.A. Karl, R.A. Lutz, and R.C. Vrijenhoek. 2011. Genetic diversity and demographic instability in Riftia pachyptila tubeworms from eastern Pacific hydrothermal vents. BMC Evolutionary Biology, 11: 96. http://dx.doi.org/10.1186/1471-2148-11-96

Das, J., T. Maughan, M. McCann, M. Godin, T. O'Reilly, M. Messié, F. Bahr, K. Gomes, F. Py, J.G. Bellingham, G.S. Sukhatme, and K. Rajan. 2011. Towards mixed-initiative, multi-robot field experiments: Design, deployment, and lessons learned. Proceedings of the International Conference on Intelligent Robots and Systems, San Francisco, California, 25–30 September 2011.

del Rio, J., D.M. Toma, T.C. O'Reilly, A.H. Broring, A. Manuel, K.L. Headley, and D. Edgington. 2011. Interoperable data management and instrument control experiences at OBSEA. OCEANS 2011, 2011: 1–4. http://dx.doi.org/10.1109/Oceans-Spain.2011.6003616

Demir-Hilton, E., S. Sudek, M.L. Cuvelier, C.L. Gentemann, J.P. Zehr, and A.Z. Worden. 2011. Global distribution patterns of distinct clades of the photosynthetic picoeukaryote Ostreococcus. The ISME Journal, 5: 1095–1107. http://dx.doi.org/10.1038/ismej.2010.209

Edgington, D.R., R. Butler, T. Fleury, K. Gomes, J. Graybeal, R.A. Herlien, and V. Welch. 2011. Observatory Middleware Framework (OMF). In Remote Instrumentation Services on the e-Infrastructure, edited by F. Davoli, N. Meyer, R. Pugliese, and S. Zappatore, 231–240. New York: Springer, 2011.

Faichney, I.D.E., J.M. Webster, D.A. Clague, J.C. Braga, W. Renema, and D.C. Potts. 2011. The impact of the Mid-Pleistocene Transition on the composition of submerged reefs of the Maui Nui Complex, Hawaii. Palaeogeography, Palaeoclimatology, Palaeoecology, 299: 493–506. http://dx.doi.org/10.1016/j.palaeo.2010.11.027

Ferrario, M.E., A.O. Cefarelli, B. Robison, and M. Vernet. 2011. Thalassioneis signyensis (Bacillariophyceae) from northwest Weddell Sea icebergs, an emendation of the generic description. Journal of Phycology, 48: 222–230. http://dx.doi.org/10.1111/j.1529-8817.2011.01097.x

Fredericks, J.J., and C. Rueda. 2011. Content-infused OGC web services enabling dynamic quality assessment in observing systems. Workshop on Sensor Web Enablement 2011, Banff, Alberta, Canada, 6–7 October 2011.