Johnson, K.S., L.J. Coletti, H.W. Jannasch, C.M. Sakamoto, D.D. Swift, and S.C. Riser. 2013. Long-term nitrate measurements in the ocean using the In Situ Ultraviolet Spectrophotometer: Sensor integration into the APEX profiling float. Journal of Atmospheric and Oceanic Technology, 30: 1854–1866. http://dx.doi.org/10.1175/JTECH-D-12-00221.1
Johnson, S.B., Y.J. Won, J.B.J. Harvey, and R.C. Vrijenhoek. 2013. A hybrid zone between Bathymodiolus mussel lineages from eastern Pacific hydrothermal vents. BMC Evolutionary Biology, 13: 21. http://dx.doi.org/10.1186/1471-2148-13-21
Kahn, A.S., J.B. Geller, H.M. Reiswig, and K.L. Smith Jr. 2013. Bathydorus laniger and Docosaccus maculatur (Lyssacinosida; Hexactinellida): Two new species of glass sponge from the abyssal eastern North Pacific Ocean. Zootaxa, 3646: 386–400. http://dx.doi.org/10.11646/zootaxa.3646.4.4
Kannberg, P.K., A.M. Tréhu, S.D. Pierce, C.K. Paull, and D.W. Caress. 2013. Temporal variation of methane flares in the ocean above Hydrate Ridge, Oregon. Earth and Planetary Science Letters, 368: 33–42. http://dx.doi.org/10.1016/j.epsl.2013.02.030
Kecy, C.D., E.T. Peltzer, P.M. Walz, K. Headley, R.A. Herlien, T. Maughan, G.I. Matsumoto, T.C. O'Reilly, K.A. Salamy, F. Shane, C. Lovera, J. Scholfield, W. Kirkwood, J.P. Barry, and P.G. Brewer. 2013. Open source instrumentation nodes for the greater oceanographic community. Proceedings of Marine Technology Society/Institute for Electrical and Electronics Engineers Oceans 2013, San Diego, 23–26 September 2013.
Kim, T.W., J.P. Barry, and F. Micheli. 2013. The effects of intermittent exposure to low pH and oxygen conditions on survival and growth of juvenile red abalone. Biogeosciences Discussions, 10: 3559–3576. http://dx.doi.org/10.5194/bgd-10-3559-2013
Kirkwood, W.J., E. Peltzer, P. Walz, K. Headley, C. Kecy, F. Shane, J. Scholfield, T. O'Reilly, T. Maughan, K. Salamy, and P.G. Brewer. 2013. xFOCE: An open source technology consortium for ocean acidification research. Proceedings of the 2013 Institute of Electrical and Electronics Engineers International Underwater Technology Symposium, 2013: 4–9. http://dx.doi.org/10.1109/UT.2013.6519808
Laguione-Marchais, C., D.S.M. Billett, G.L.D. Paterson, H.A. Ruhl, E.H. Soto, K.L. Smith Jr., and S. Thatje. 2013. Interannual dynamics of abyssal polychaete communities in the North East Pacific and North East Atlantic - A family-level study. Deep Sea Research I, 75: 175–186. http://dx.doi.org/10.1016/j.dsr.2012.12.007
Lapham, L., R. Wilson, M. Riedel, C.K. Paull, and M.E. Holmes. 2013. Temporal variability of in situ methane concentrations in gas hydrate-bearing sediments near Bullseye Vent, Northern Cascadia Margin. Geochemistry, Geophysics, Geosystems, 14: 2445–2459. http://dx.doi.org/10.1002/ggge.20167
Madin, L.P., W.M. Hamner, S.H.D. Haddock, and G.I. Matsumoto. Scuba diving in blue water: A window on ecology and evolution in the epipelagic ocean. In Research and Discovery: The Revolution of Science through Scuba, edited by Lang, M.A., R.L. Marinelli, S.J. Roberts, and P.R. Taylor, 71–82. Washington, D.C., Smithsonian Institution Scholarly Press: 2013.
Martin, E.J., H. Thomas, D.W. Caress, and B.W. Hobson. 2013. Seafloor mapping and imaging efforts using AUVs. Proceedings of the 18th International Symposium on Unmanned Untethered Submersible Technology, Portsmouth, New Hampshire, 11–14 August 2013.
McEwen, R., and S.M. Rock. 2013. Stability criterion for a wall-following AUV. Proceedings of the 18th International Symposium on Unmanned Untethered Submersible Technology, Portsmouth, New Hampshire, 11–14 August 2013.
Messié, M., and F.P. Chavez. 2013. Physical-biological synchrony in the global ocean associated with recent variability in the central and western equatorial Pacific. Journal of Geophysical Research, 118: 3782–3794. http://dx.doi.org/10.1002/jgrc.20278
Monier, A., S. Sudek, N.M. Fast, and A.Z. Worden. 2013. Gene invasion in distant eukaryotic lineages: discovery of mutually exclusive genetic elements reveals marine biodiversity. ISME Journal, 7: 1764–1774. http://dx.doi.org/10.1038/ismej.2013.70
Ottesen, E.A., C.R. Young, J.M. Eppley, J.P. Ryan, F.P. Chavez, C.A. Scholin, and E.F. DeLong. 2013. Pattern and synchrony of gene expression among sympatric marine microbial populations. Proceedings of the National Academy of Sciences, 110: E488–E497. http://dx.doi.org/10.1073/pnas.1222099110
Pargett, D.M. 2013. Design and fabrication of a 1m titanium sphere for 4000m ocean depth. Proceedings of Marine Technology Society/Institute of Electrical and Electronics Engineers Oceans 2013, San Diego, 23–26 September 2013.
Pargett, D.M., S.D. Jensen, B.A. Roman, C.M. Preston, W. Ussler III, P.R. Girguis, R. Marin III, J.M. Birch, and C.A. Scholin. 2013. Deep water instrument for microbial identification, quantification, and archiving. Proceedings of Marine Technology Society/Institute of Electrical and Electronics Engineers Oceans '13, San Diego, 23–26 September 2013.
Pohlman, J.W., M. Riedel, J.E. Bauer, E.A. Canuel, C.K. Paull, L. Lapham, K.S. Grabowski, R.B. Coffin, and G.D. Spence. 2013. Anaerobic methane oxidation in low-organic content methane seep sediments. Geochimica et Cosmochimica Acta, 108: 184–201. http://dx.doi.org/10.1016/j.gca.2013.01.022
Radenac, M.H., M. Messié, F. Léger, and C. Bosc. 2013. A very oligotrophic zone observed from space in the equatorial Pacific warm pool. Remote Sensing of Environment, 134: 224–233. http://dx.doi.org/10.1016/j.rse.2013.03.007
Read, B.A., J. Kegel, M.J. Klute, A. Kuo, S.C. lefebvre, F. Maumus, C. Mayer, J. Miller, A. Monier, A. Salamov, J. Young, M. Aguilar, J.M. Claverie, S. Frickenhaus, K. Gonzalez, E.K. Herman, Y.C. lin, J. Napier, H. Ogata, A.F. Sarno, J. Shmutz, D. Schroeder, C. de Vargas, F. Verret, P. von Dassow, K. Valentin, Y. Van de Peer, G. Wheeler, Emiliania huxleyi Annotation Consortium, J.B. dacks, C.F. Delwiche, S.T. dyhrman, G. Glockner, U. John, T. Richards, A.Z. Worden, X. Zhang, and I.V. Grigoriev. 2013. Pan genome of the phytoplankton Emiliania underpins its global distribution. Nature, 499: 209–213. http://dx.doi.org/10.1038/nature12221
Ryan, J.F., K. Pang, C.E. Schnitzler, A.D. Nguyen, R.T. Moreland, D.K. Simmons, B.J. Koch, W.R. Francis, P. Havlak, NISC Comparative Sequencing Program, S.A. Smith, N.H. Putnam, S.H.D. Haddock, C.W. Dunn, T.G. Wolfsberg, J.C. Mullikin, M.Q. Martindale, and A.D. Baxevanis. 2013. The genome of the ctenophore Mnemiopsis leidyi and its implications for cell type evolution. Science, 342: 1336–1344. http://dx.doi.org/10.1126/science.1242592
Santora, J.A., W.J. Sydeman, M. Messié, F. Chai, Y. Chao, S.A. Thompson, B.K. Wells, and F.P. Chavez. 2013. Triple check: Observations verify structural realism of an ocean ecosystem model. Geophysical Research Letters, 40: 1367–1372. http://dx.doi.org/10.1002/grl.50312
Santoro, A.E., C.M. Sakamoto, J.M. Smith, J.N. Plant, A.L. Gehman, A.Z. Worden, K.S. Johnson, C.A. Francis, and K.L. Casciotti. 2013. Measurements of nitrite production and nitrite-producing organisms in and around the primary nitrite maximum in the central California Current. Biogeosciences Discussions, 10: 5803–5840. http://dx.doi.org/10.5194/bgd-10-5803-2013
Schlining, K., S. Von Thun, L. Kuhnz, B. Schlining, L. Lundsten, N. Jacobsen Stout, L. Chaney, and J. Connor. 2013. Debris in the deep: Using a 22-year video annotation database to survey marine litter in Monterey Canyon, Central California, USA. Deep Sea Research I, 79: 96–105. http://dx.doi.org/10.1016/j.dsr.2013.05.006
Sedlacek, L., D. Thistle, G. Fernandez-Leborans, K.R. Carman, and J.P. Barry. 2013. First report of ciliate (Protozoa) epibionts on deep-sea harpacticoid copepods. Deep Sea Research II, 92: 165–171. http://dx.doi.org/10.1016/j.dsr2.2013.01.033
Sevadjian, J.C., M.A. McManus, J. Ryan, A.T. Greer, R.K. Cowen, and C.B. Woodson. 2013. Across-shore variability in plankton layering and abundance associated with physical forcing in Monterey Bay, California. Continental Shelf Research, 72: 138–151.
Shane, F.F., K. Headley, P. Walz, C. Kecy, G.I. Matsumoto, R.A. Herlien, E.T. Peltzer, J. Scholfield, K.A. Salamy, T. Maughan, T.C. O'Reilly, C. Lovera, W.J. Kirkwood, J. Barry, and P.G. Brewer. 2013. xFOCE: An open source, multi-disciplinary resource for in-situ ocean acidification research. Proceedings of Marine Technology Society/Institute of Electrical and Electronics Engineers Oceans 2013, San Diego, 23–27 September 2013.
Shortis, M.R., M. Ravanbakskh, F. Shaifat, E.S. Harvey, A. Mian, J.W. Seager, P.F. Culverhouse, D.E. Cline, and D.R. Edgington. 2013. A review of techniques for the identification and measurement of fish in underwater stereo-video image sequences. Proceedings of SPIE 8791, Videometrics, Range Imaging, and Applications XII; and Automated Visual Inspection, 8791G, 8791: 1–10. http://dx.doi.org/10.1117/12.2020941
Siebert, S., P.R. Pugh, S.H.D. Haddock, and C.W. Dunn. 2013. Re-evaluation of characters in Apolemiidae (Siphonophora), with description of two new species from Monterey Bay, California. Zootaxa, 3702: 201–232. http://dx.doi.org/10.11646/zootaxa.3702.3
Smith Jr., K.L., A.D. Sherman, T.J. Shaw, and J. Sprintall. 2013. Icebergs as unique Lagrangian ecosystems in polar seas. Annual Review of Marine Science, 5: 269–287. http://dx.doi.org/10.1146/annurev-marine-121211-172317
Smith Jr., K.L., H.A. Ruhl, M. Kahru, C.L. Huffard, and A.D. Sherman. 2013. Deep ocean communities impacted by changing climate over 24 y in the abyssal northeast Pacific Ocean. Proceedings of the National Academy of Sciences, 110: 19838–19841. https://doi.org/10.1073/pnas.1315447110
Stevens, T., C.K. Paull, W. Ussler III, M. McGann, J.P. Buylaert, and E. Lundsten. 2013. The timing of sediment transport down Monterey Submarine Canyon, offshore California. Geological Society of America Bulletin, 126: 103–121. http://dx.doi.org/10.1130/B30931.1
Stiller, J., V. Rousset, F. Pleijel, P. Chevaldonne, R.C. Vrijenhoek, and G.W. Rouse. 2013. Phylogeny, biogeography and systematics of hydrothermal vent and methane seep Amphisamytha (Ampharetidae, Annelida), with descriptions of three new species. Systematics and Biodiversity, 11: 35–65. http://dx.doi.org/10.1080/14772000.2013.772925
Sumner, E.J., J. Peakall, D.R. Parsons, R.B. Wynn, S.E. Darby, R.M. Dorrell, S.D. McPhail, J. Perrett, A. Webb, and D. White. 2013. First direct measurements of hydraulic jumps in an active submarine density current. Geophysical Research Letters, 40: 5904–5908. http://dx.doi.org/10.1002/2013GL057862
Sumner, E.J., M.I. Siti, L.C. McNeill, P.J. Talling, T.J. Henstock, R.B. Wynn, Y.S. Djajadihardja, and H. Permana. 2013. Can turbidites be used to reconstruct a paleoearthquake record for the central Sumatran margin?. Geology, 41: 763–766. http://dx.doi.org/10.1130/G34298.1
Takeshita, Y., T.R. Martz, K.S. Johnson, J.N. Plant, D. Gilbert, S.C. Riser, C. Neill, and B. Tilbrook. 2013. A climatology-based quality control procedure for profiling float oxygen data. Journal of Geophysical Research: Oceans, 118: 5640–5650. http://dx.doi.org/10.1002/jgrc.20399
Talling, P.J., C.K. Paull, and D.J.W. Piper. 2013. How are subaqueous sediment density flows triggered, what is their internal structure and how does it evolve? Direct observations from monitoring of active flows. Earth-Science Reviews, 125: 244–287. http://dx.doi.org/10.1016/j.earscirev.2013.07.005
Tang, Q., C.T.A. Chen, K. Yu, M. Dai, M. Zhao, C. Ke, G.T.F. Wong, F. Chai, G. Wei, L. Zhou, L. Chen, J. Song, J.P. Barry, Y. Wu, and K. Gao. 2013. The effects of ocean acidification on marine organisms and ecosystem. Chinese Science Bulletin, 58: 1307–1314.
Tavormina, P.L., W. Ussler III, J.A. Steele, S.A. Connon, M.G. Klotz, and V.J. Orphan. 2013. Abundance and distribution of diverse membrane-bound monooxygenase (Cu-MMOs) genes within the Costa Rica oxygen minimum zone. Environmental Microbiology, 5: 414–423. http://dx.doi.org/10.1111/1758-2229.12025
Taylor, J.R., C. Lovera, P.J. Whaling, K.R. Buck, E.F. Pane, and J.P. Barry. 2013. Physiological compensation for environmental acidification is limited in the deep-sea urchin Strongylocentrotus fragilis. Biogeosciences Discussions, 10: 8313–8341. http://dx.doi.org/10.5194/bgd-10-8313-2013
Thompson, D., D. Caress, D. Clague, D. Conlin, J. Harvey, E. Martin, J. Paduan, C. Paull, J. Ryan, H. Thomas, and Y. Zhang. 2013. MBARI Dorado AUV's scientific results. Proceedings of Marine Technology Society/Institute of Electrical and Electronics Engineers Oceans 2013, San Diego, 23–27 September 2013.
Thuesen, E.V., and S.H.D. Haddock. 2013. Archeterokrohnia docrickettsae (Chaetognatha: Phragmophora: Heterokrohniidae), a new species of deep-sea arrow worm from the Gulf of California. Zootaxa, 3717: 320–328. http://dx.doi.org/10.11646/zootaxa.3717.3.2
Ussler III, W., C.M. Preston, P. Tavormina, D. Pargett, S. Jensen, B. Roman, R. Marin III, S.R. Shah, P.R. Girguis, J.M. Birch, V.J. Orphan, and C. Scholin. 2013. Autonomous application of quantitative PCR in the deep sea: In situ surveys of aerobic methanotrophs using the deep-sea Environmental Sample Processor. Environmental Science and Technology, 47: 9339–9346. http://dx.doi.org/10.1021/es4023199
Vardaro, M.F., P.M. Bagley, D.M. Bailey, B.J. Bett, D.O.B. Jones, R.J. Milligan, I.G. Priede, C.M. Risien, G.T. Rowe, H.A. Ruhl, B.B. Sangolay, K.L. Smith Jr., A. Walls, and J. Clarke. 2013. A southeast Atlantic deep-ocean observatory: First experiences and results. Limnology and Oceanography: Methods, 11: 304–315. http://dx.doi.org/10.4319/lom.2013.11.304
Vergin, K.L., B. Beszteri, A. Monier, J.C. Thrash, B. Temperton, A.H. Treusch, F. Kilpert, A.Z. Worden, and S.J. Giovannoni. 2013. High-resolution SAR11 ecotype dynamics at the Bermuda Atlantic Time-Series Study site by phylogenetic placement of pyrosequences. ISME Journal, 7: 1322–1332. http://dx.doi.org/10.1038/ismej.2013.32
Vrijenhoek, R.C. 2013. On the instability and evolutionary age of deep-sea chemosynthetic communities. Deep Sea Research II, 92: 189–200. http://dx.doi.org/10.1016/j.dsr2.2012.12.004
Wilson, S.E., H.A. Ruhl, and K.L. Smith Jr. 2013. Zooplankton fecal pellet flux in the abyssal northeast Pacific: a 15 year time-series study. Limnology and Oceanography, 58: 881–892. http://dx.doi.org/10.4319/lo.2013.58.3.0881
Xu, Y., F. Chai, K.A. Rose, M. Niquen, and F.P. Chavez. 2013. Environmental influences on the interannual variation and spatial distribution of Peruvian anchovy (Engraulis ringens) population dynamics from 1991 to 2007: A three-dimensional modeling study. Ecological Modelling, 264: 64–82. https://doi.org/10.1016/j.ecolmodel.2013.01.009
Yeo, I.A., D.A. Clague, J.F. Martin, J.B. Paduan, and D.W. Caress. 2013. Pre-eruptive flow focussing in dikes feeding historic pillow ridges on the Juan de Fuca and Gorda Ridges. Geochemistry, Geophysics, Geosystems, 14: 3586–3599. http://dx.doi.org/10.1002/ggge.20210
Zhang, Y., J.G. Bellingham, J.P. Ryan, B. Kieft, and M.J. Stanway. 2013. Two-dimensional mapping and tracking of a coastal upwelling front by an autonomous underwater vehicle. Proceedings of Marine Technology Society/Institute of Electrical and Electronics Engineers Oceans 2013, San Diego, 23–27 September 2013. https://doi.org/10.23919/OCEANS.2013.6741231
Audzijonyte, A., E.M. Krylova, H. Sahling, and R.C. Vrijenhoek. 2012. Molecular taxonomy reveals broad trans-oceanic distributions and high species diversity of deep-sea clams (Bivalvia: Vesicomyidae: Pliocardiinae) in chemosynthetic environments. Systematics and Biodiversity, 10: 403–415. http://dx.doi.org/10.1080/14772000.2012.744112
Bjorkstedt, E.P., R. Goericke, S. McClatchie, E. Weber, W. Watson, N. Lo, W.T. Peterson, R.D. Brodeur, T. Auth, J. Fisher, C. Morgan, J. Peterson, J. Largier, S.J. Bograd, R. Durazo, G. Gaxiola-Castro, B. Lavaniegos, F.P. Chavez, C.A. Collins, B. Hannah, J. Field, K. Sakuma, W. Satterthwaite, M. O'Farrell, S. Hayes, J. Harding, W.J. Sydeman, S.A. Thompson, P. Warzybok, R. Bradley, J. Jahncke, R.T. Golightly, S.R. Schneider, R.M. Suryan, A.J. Gladics, C.A. Horton, S.Y. Kim, S.R. Melin, R.L. DeLong, and J. Abell. 2012. State of the California Current 2011–2012: ecosystems respond to local forcing as La Niña wavers and wanes. California Cooperative Oceanic Fisheries Investigations Reports, 53: 41–76.
Brewer, P.G. 2012. Book Review: "Ocean Acidification" Edited by J.P. Gattuso and L. Hansson, Oxford University Press. Limnology and Oceanography Bulletin, 21: 14–16.
Buck, K.R., N.N. Rabalais, J.M. Bernhard, and J.P. Barry. 2012. Living assemblages from the ‘dead zone’ and naturally occurring hypoxic zones. Anoxia: Evidence for Eukaryote Survival and Paleontological Strategies, COLE 21: 343–352. http://dx.doi.org/10.1007/978-94-007-1896-8_18
Buitenhuis, E.T., W.K.W. Li, D. Vaulot, M.W. Lomas, M. Landry, F. Partensky, D.M. Karl, O. Ulloa, L. Campbell, S. Jacquet, F. Lantoine, F. Chavez, D. Macias, M. Gosselin, and G.B. McManus. 2012. Picophytoplankton biomass distribution in the global ocean. Earth System Science Data Discussions, 5: 221–242. http://dx.doi.org/10.5194/essdd-5-221-2012
Bush, S.L., H.J.T. Hoving, C.L. Huffard, B.H. Robison, and L.D. Zeidberg. 2012. Brooding and sperm storage by the deep-sea squid Bathyteuthis berryi (Cephalopoda: Decapodiformes). Journal of the Marine Biological Association of the United Kingdom, 92: 1629–1636. http://dx.doi.org/10.1017/S0025315411002165
Caress, D.W., D.A. Clague, J.B. Paduan, J.F. Martin, B.M. Dreyer, W.W. Chadwick Jr., A. Denny, and D.S. Kelley. 2012. Repeat bathymetric surveys at 1-metre resolution of lava flows erupted at Axial Seamount in April 2011. Nature Geoscience, 5: 483–488. http://dx.doi.org/10.1038/ngeo1496
Chavez, F.P. 2012. Climate change and marine ecosystems. Proceedings of the National Academy of Sciences of the United States of America, 109: 19045–19046. http://dx.doi.org/10.1073/pnas.1217112109
Condon, R.H., C.M. Duarte, K.A. Pitt, K.L. Robinson, C.H. Lucas, K.R. Sutherland, H.W. Mianzan, M. Bogeberg, J.E. Purcell, M.B. Decker, S.I. Uye, L.P. Madin, R.D. Brodeur, S.H.D. Haddock, A. Malej, G.D. Parry, E. Eriksen, J. Quiñones, M. Acha, M. Harvey, J.M. Arthur, and W.M. Graham. 2012. Recurrent jellyfish blooms are a consequence of global oscillations. Proceedings of the National Academy of Sciences of the United States of America, 110: 1000–1005. http://dx.doi.org/10.1073/pnas.1210920110
Condon, R.H., W.M. Graham, C.M. Duarte, K.A. Pitt, C.H. Lucas, S.H.D. Haddock, K.R. Sutherland, K.L. Robinson, M.N. Dawson, M.B. Decker, C.E. Mills, J.E. Purcell, A. Malej, H. Mianzan, S.I. Uye, S. Gelcich, and L.P. Madin. 2012. Questioning the rise of gelatinous zooplankton in the world's oceans. BioScience, 62: 160–169. http://dx.doi.org/10.1525/bio.2012.62.2.9
Curtis, B.A., G. Tanifuji, F. Burki, A. Gruber, M. Irimia, S. Maruyama, M.C. Arias, S.G. Ball, G.H. Gile, Y. Hirakawa, J.F. Hopkins, A. Kuo, S.A. Rensing, J. Schmutz, A. Symeonidi, M. Elias, J.M. Eveleigh, E.K. Herman, M.J. Klute, T. Nakayama, M. Obornik, A. Reyes-Prieto, E.V. Armbrust, S.J. Aves, R.G. Beiko, P. Coutinho, J.B. Dacks, D.G. Durnford, N.M. Fast, B.R. Green, C.J. Grisdale, F. Hempel, B. Henrissat, M.P. Höppner, K.I. Ishida, E. Kim, L. Kořený, P.G. Kroth, Y. Liu, S.B. Malik, U.G. Maier, D. McRose, T. Mock, J.A.D. Neilson, N.T. Onodera, A.M. Poole, E.J. Pritham, T.A. Richards, G. Rocap, S.W. Roy, C. Sarai, S. Schaack, S. Shirato, C.H. Slamovits, D.F. Spencer, S. Suzuki, A.Z. Worden, S. Zauner, K. Barry, C. Bell, A.K. Bharti, J.A. Crow, J. Grimwood, R. Kramer, E. Lindquist, S. Lucas, A. Salamov, G.I. McFadden, C.E. Lane, P.J. Keeling, M.W. Gray, I.V. Grigoriev, and J.M. Archibald. 2012. Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs. Nature, 492: 59–65. http://dx.doi.org/10.1038/nature11681
Das, J., F. Py, T. Maughan, T. O'Reilly, M. Messié, J. Ryan, G.S. Sukhatme, and K. Rajan. 2012. Coordinated sampling of dynamic oceanographic features with underwater vehicles and drifters. International Journal of Robotics Research, 31: 626–646. http://dx.doi.org/10.1177/0278364912440736
Das, J., F. Py, T. Maughan, T. O'Reilly, M. Messié, J. Ryan, G.S. Sukhatme, and K. Rajan. 2012. Simultaneous tracking and sampling of dynamic oceanographic features with AUVs and drifters. Experimental Robotics, 79: 541–555. https://doi.org/10.1007/978-3-642-28572-1_37
Das, J., J. Harvey, J. Ryan, F. Py, R. Graham, K. Rajan, and G. Sukhatme. 2012. Multi-stage Bayesian regression for adaptive sampling of marine phenomena. RSS 2012 Workshop on Robotics for Environmental Monitoring, Sydney, NSW, Australia, 9–13 July 2012.
Demir-Hilton, E., D.A. Hutchins, K.J. Czymmek, and K.J. Coyne. 2012. Description of Viridilobus marinus (gen. et sp. nov.), a new raphidophyte from Delaware's Inland Bays. Journal of Phycology, 48: 1220–1231. http://dx.doi.org/10.1111/j.1529-8817.2012.01212.x
Doney, S.C., M. Ruckelshaus, J.E. Duffy, J.P. Barry, F. Chan, C.A. English, H.M. Galindo, J.M. Grebmeier, A.B. Hollowed, N. Knowlton, J. Polovina, N.N. Rabalais, W.J. Sydeman, and L.D. Talley. 2012. Climate change impacts on marine ecosystems. Annual Review of Marine Science, 4: 11–37. http://dx.doi.org/10.1146/annurev-marine-041911-111611
Drazen, J.C., D.M. Bailey, H.A. Ruhl, and K.L. Smith Jr. 2012. The role of carrion supply in the abundance of deep-water fish off California. PloS One, 7: e49332. http://dx.doi.org/10.1371/journal.pone.0049332
Edwards, K.J., C.G. Wheat, B.N. Orcutt, S. Hulme, K. Becker, H. Jannasch, A. Haddad, T. Pettigrew, W. Rhinehart, K. Grigar, W. Bach, W. Kirkwood, and A. Klaus. 2012. Design and deployment of borehole observatories and experiments during IODP Expedition 336, Mid-Atlantic Ridge flank at North Pond. Proceedings of the Integrated Ocean Drilling Program, 336: 1–43. http://dx.doi.org/10.2204/iodp.proc.336.109.2012
Fischer, E.V., K.R.M. Mackey, D.F. Cusack, L.R.G. DeSantis, L. Hartzell-Nichols, J.A. Lutz, J. Melbourne-Thomas, R. Meyer, D.A. Riveros-Iregui, C.J.B. Sorte, J.R. Taylor, and S.A. White. 2012. Is pre-tenure interdisciplinary research a career risk? EOS, 93: 311–312.
Fisher, A., T. Tsuji, K. Petronotis, C.G. Wheat, K. Becker, J.F. Clark, J. Cowen, K. Edwards, and H. Jannasch. 2012. IODP Expedition 327 and Atlantis Expedition AT 18-07: Observatories and Experiments on the Eastern Flank of the Juan de Fuca Ridge. Scientific Drilling Journal, 13: 4–11. http://dx.doi.org/10.2204/iodp.sd.13.01.2011
Frolov, S., J. Paduan, M. Cook, and J. Bellingham. 2012. Improved statistical prediction of surface currents based on historic HF-radar observations. Ocean Dynamics, 62: 1111–1122. http://dx.doi.org/10.1007/s10236-012-0553-5
Frolov, S., J.P. Ryan, and F.P. Chavez. 2012. Predicting euphotic-depth-integrated chlorophyll-a from discrete depth and satellite-observable chlorophyll-a off central California . Journal of Geophysical Research, 117(C5): 1–7. http://dx.doi.org/10.1029/2011JC007322
García-Olaya, A., F. Py, J. Das, and K. Rajan. 2012. An online utility-based approach for sampling dynamic ocean fields. IEEE Journal of Oceanic Engineering, 37: 185–203. http://dx.doi.org/10.1109/JOE.2012.2183934
Gomez, F., A. Montecinos, S. Hormazabal, L.A. Cubillos, M. Correa-Ramirez, and F.P. Chavez. 2012. Impact of spring upwelling variability off southern-central Chile on common sardine (Strangomera bentincki) recruitment. Fisheries Oceanography, 21: 405–414. http://dx.doi.org/10.1111/j.1365-2419.2012.00632.x
González, J., I. Masmitjà, S. Gomáriz, E. Molino, J. del Río, A. Mànuel, J. Busquets, A. Guerrero, F. López, M. Carreras, D. Ribas, A. Carrera, C. Candela, P. Ridao, J. Sousa, P. Calado, J. Pinto, A. Sousa, R. Martins, D. Borrajo, A. Olaya, B. Garau, I. González, S. Torres, K. Rajan, M. McCann, and J. Gilabert. 2012. AUV based multi-vehicle collaboration: Salinity studies in Mar Menor coastal lagoon. Proceedings of the IFAC Workshop on- Navigation, Guidance and Control of Underwater Vehicles, 45(5): 287–292. http://dx.doi.org/10.3182/20120410-3-PT-4028.00048
Gottlieb, J., R. Graham, T. Maughan, F. Py, G. Elkaim, and K. Rajan. 2012. An experimental momentum-based front detection method for autonomous underwater vehicles. In: Proceedings of the IEEE International Conference on Robotics and Automation, 2012: 5322–5327. http://dx.doi.org/10.1109/ICRA.2012.6225115
Graham, R., F. Py, J. Das, D. Lucas, T. Maughan, and K. Rajan. 2012. Exploring space-time tradeoffs in autonomous sampling for marine robotics. 13th International Symposium on Experimental Robotics, Québec, Canada, 18–21 June 2012.
Haines, S., V. Subramanian, E. Mayorga, D. Snowden, R. Ragsdale, C. Rueda, and M. Howard. 2012. IOOS vocabulary and ontology strategy for observed properties. Oceans 2012, 2012: 1–9. http://dx.doi.org/10.1109/OCEANS.2012.6405083
Hales, B., P.G. Strutton, M. Saraceno, R. Letelier, T. Takahashi, R. Feely, C. Sabine, and F. Chavez. 2012. Satellite-based prediction of pCO2 in coastal waters of the eastern North Pacific. Progress in Oceanography, 103: 1–15. http://dx.doi.org/10.1016/j.pocean.2012.03.001
Harvey, J., Y. Zhang, and J. Ryan. 2012. AUVs for ecological studies of marine plankton communities. Sea Technology Magazine, 53: 51–54.
Harvey, J.B.J., J.P. Ryan, R. Marin III, C.M. Preston, N. Alvarado, C.A. Scholin, and R.C. Vrijenhoek. 2012. Robotic sampling, in situ monitoring and molecular detection of marine zooplankton. Journal of Experimental Marine Biology and Ecology, 413: 60–70. http://dx.doi.org/10.1016/j.jembe.2011.11.022
Hill, T.M., M. LaVigne, H.J. Spero, T. Guilderson, B. Gaylord, and D. Clague. 2012. Variations in seawater Sr/Ca recorded in deep-sea bamboo corals. Paleoceanography, 27: 1–7. http://dx.doi.org/10.1029/2011PA002260
Hobson, B.W., J.G. Bellingham, B. Kieft, R. McEwen, M. Godin, and Y. Zhang. 2012. Tethys-class long range AUVs-extending the endurance of propeller-driven cruising AUVs from days to weeks. Autonomous Underwater Vehicles (AUV), 2012 IEEE/OES, 2012: 1–8. http://dx.doi.org/10.1109/AUV.2012.6380735
Holland, N.D., K.J. Osborn, and L.A. Kuhnz. 2012. A new deep-sea species of harrimaniid enteropneust (Hemichordata). Proceedings of the Biological Society of Washington, 125: 228–240.
Holland, N.D., L.A. Kuhnz, and K.J. Osborn. 2012. Morphology of a new deep-sea acorn worm (class Enteropneusta, phylum Hemichordata): a part-time demersal drifter with externalized ovaries. Journal of Morphology, 273: 661–671. http://dx.doi.org/10.1002/jmor.20013
Houts, S.E., S.M. Rock, and R. McEwen. 2012. Aggressive terrain following for motion-constrained AUVs. Autonomous Underwater Vehicles, 2012: 1–7. http://dx.doi.org/10.1109/AUV.2012.6380749
Hoving, H.J.T., and B.H. Robison. 2012. Vampire squid: detritivores in the oxygen minimum zone. Proceedings of the Royal Society B, 279: 4559–4567. http://dx.doi.org/10.1098/rspb.2012.1357
Hoving, H.J.T., and M. Vecchione. 2012. Mating behaviour of a deep-sea squid revealed by in situ videography and the study of archived specimens. Biological Bulletin, 223: 263–267.
Johnsen, S., T.M. Frank, S.H.D. Haddock, E.A. Widder, and C.G. Messing. 2012. Light and vision in the deep-sea benthos: I. Bioluminescence at 500–1000 m depth in the Bahamian Islands. Journal of Experimental Biology, 215: 3335–3343. http://doi.org/10.1242/jeb.072009
Jolliff, J.K., R.W. Gould Jr., B. Penta, W.J. Teague, S. DeRada, F.P. Chavez, and R.A. Arnone. 2012. Water mass bio-optical properties in the Monterey Bay region: Fluorescence-based inference of shifts in phytoplankton photophysiology. Journal of Geophyiscal Research: Oceans, 117: 1–16. http://dx.doi.org/10.1029/2011JC007568
Kahn, A.S., H.A. Ruhl, and K.L. Smith. 2012. Temporal changes in deep-sea sponge populations are correlated to changes in surface climate and food supply. Deep Sea Research I, 70: 36–41. http://dx.doi.org/10.1016/j.dsr.2012.08.001
Kelley, D.S., S.M. Carbotte, D.W. Caress, D.A. Clague, J.R. Delaney, J.B. Gill, H. Hadaway, J.F. Holden, E.E.E. Hooft, J.P. Kellogg, M.D. Lilley, M. Stoermer, D. Toomey, R. Weekly, and W.S.D. Wilcock. 2012. Endeavour segment of the Juan de Fuca ridge: one of the most remarkable places on Earth. Oceanography, 25: 44–61. http://dx.doi.org/10.5670/oceanog.2012.03
Kitts, C., P. Mahacek, T. Adamek, K. Rasal, V. Howard, S. Li, A. Badaoui, W. Kirkwood, G. Wheat, and S. Hulme. 2012. Field operation of a robotic small waterplane area twin hull boat for shallow-water bathymetric characterization. Journal of Field Robotics, 29: 924–938. http://dx.doi.org/10.1002/rob.21427
Klapp, S.A., F. Enzmann, P. Walz, T. Huthwelker, J. Tuckermann, J.O. Schwarz, T. Pape, E.T. Peltzer, R. Mokso, D. Wangner, F. Marone, M. Kersten, G. Bohrmann, W.F. Kuhs, M. Stampanoni, and P.G. Brewer. 2012. Microstructure characteristics during hydrate formation and dissociation revealed by X-ray tomographic microscopy. Geo-Marine Letters, 32: 555–562. http://dx.doi.org/10.1007/s00367-012-0276-0
Kline, D.I., L. Teneva, K. Schneider, T. Miard, A. Chai, M. Marker, K. Headley, B. Opdyke, M. Nash, M. Valetich, J.K. Caves, B.D. Russell, S.D. Connell, W.J. Kirkwood, P. Brewer, E. Peltzer, J. Silverman, K. Caldeira, R.B. Dunbar, J.R. Koseff, S.G. Monismith, B.G. Mitchel, S. Dove, and O. Hoegh-Guldberg. 2012. A short-term in situ CO2 enrichment experiment on Heron Island (GBR). Scientific Reports, 2: 413. http://dx.doi.org/10.1038/srep00413
Lee, W.L., H.M. Reiswig, W.C. Austin, and L. Lundsten. 2012. An extraordinary new carnivorous sponge, Chondrocladia lyra, in the new subgenus Symmetrocladia (Demospongiae, Cladorhizidae), from off of northern California, USA. Invertebrate Biology, 131: 259–284. http://dx.doi.org/10.1111/ivb.12001
Levin, L.A., V.J. Orphan, G.W. Rouse, A.E. Rathburn, W. Ussler III, G.S. Cook, S.K. Goffredi, E.M. Perez, A. Waren, B.M. Grupe, G. Chadwick, and B. Strickrott. 2012. A hydrothermal seep on the Costa Rica margin: middle ground in a continuum of reducing ecosystems. Proceedings of the Royal Society B, 279: 2580–2588. http://dx.doi.org/10.1098/rspb.2012.0205
Lin, Y.C., T. Campbell, C.C. Chung, G.C. Gong, K.P. Chiang, and A.Z. Worden. 2012. Distribution patterns and phylogeny of marine stramenopiles in the North Pacific Ocean. Applied and Environmental Microbiology, 78: 3387–3399. http://dx.doi.org/10.1128/AEM.06952-11
Lundsten, L., S.B. Johnson, G.M. Calliet, A.P. DeVogelaere, and D.A. Clague. 2012. Morphological, molecular, and in situ behavioral observations of the rare deep-sea anglerfish Chaunacops coloratus (Garman, 1899), order Lophiiformes, in the eastern North Pacific. Deep Sea Research I, 68: 46–53. http://dx.doi.org/10.1016/j.dsr.2012.05.012