LaScala-Grunewald, D., N.H.N. Low, J.P. Barry, J.A. Brown, C. King, F.P. Chavez, and H.A. Ruhl. 2022. Building on a human-centred, iterative, and agile co-design strategy to facilitate the availability of deep ocean data. ICES Journal of Marine Science, 2022 (fsac145): 1–5. https://doi.org/10.1093/icesjms/fsac145
Messié, M., D.A. Sancho-Gallegos, J. Fiechter, J.A. Santora, and F.P. Chavez. 2022. Satellite-based Lagrangian Model reveals how upwelling and oceanic circulation shape krill hotspots in the California Current System. Frontiers in Marine Science, 9: 1–19. https://doi.org/10.3389/fmars.2022.835813
Chavez, F.P., M. Min, K. Pitz, N. Truelove, J. Baker, D. LaScala-Grunewald, M. Blum, K. Walz, C. Nye, A. Djurhuus, R.J. Miller, K.D. Goodwin, F.E. Muller-Karger, H.A. Ruhl, and C.A. Scholin. 2021. Observing life in the sea using environmental DNA. Oceanography, 34: 102–119. https://doi.org/10.5670/oceanog.2021.218
Chavez, F.P., R.J. Miller, F.E. Muller-Karger, K. Iken, G. Canonico, K. Egan, J. Price, and W. Turner. 2021. MBON—Marine Biodiversity Observation Network: An observing system for life in the sea. Oceanography, 34: 12–15. https://doi.org/10.5670/oceanog.2021.211
Lamy, T., K.J. Pitz, F.P. Chavez, C.E. York, and R.J. Miller. 2021. Environmental DNA reveals the fine-grained and hierarchical spatial structure of kelp forest fish communities. Scientific Reports, 11: 1–13. https://doi.org/10.1038/s41598-021-93859-5
Ruhl, H.A., J.A. Brown, A.R. Harper, E.L. Hazen, L. deWitt, P. Daniel, A. DeVogelaere, R.M. Kudela, J.P. Ryan, A.D. Fischer, F.E. Muller-Karger, and F.P. Chavez. 2021. Integrating biodiversity and environmental observations in support of national marine sanctuary and large marine ecosystem assessments. Oceanography, 34: 145–155. https://doi.org/10.5670/oceanog.2021.221
Santora, J.A., I.D. Schroeder, S.J. Bograd, F.P. Chavez, M.A. Cimino, J. Fiechter, E.L. Hazen, M.T. Kavanaugh, M. Messié, R.R. Miller, K.M. Sakuma, W.J. Sydeman, B.K. Wells, and J.C. Field. 2021. Pelagic biodiversity, ecosystem function, and services: An integrated observing and modeling approach. Oceanography, 34: 16–37. https://doi.org/10.5670/oceanog.2021.212
Takeshita, Y., B.D. Jones, K.S. Johnson, F.P. Chavez, D.L. Rudnick, M. Blum, K. Conner, S. Jensen, J.S. Long, T. Maughan, K.L. Mertz, J.T. Sherman, and J.K. Warren. 2021. Accurate pH and O2 measurements from Spray underwater gliders. Journal of Atmospheric and Oceanic Technology, 38: 181–195. https://doi.org/10.1175/JTECH-D-20-0095.1
Zhang, Y., B. Kieft, B.W. Hobson, B.Y. Raanan, S. Urmy, K.J. Pitz, C.M. Preston, B. Roman, K.J. Benoit-Bird, J.M. Birch, F.P. Chavez, and C.A. Scholin. 2021. Persistent sampling of vertically migrating biological layers by an autonomous underwater vehicle within the beam of a seabed-mounted echosounder. IEEE Journal of Oceanic Engineering, 46: 497–508. https://doi.org/10.1109/JOE.2020.2982811
Bach, L.T., A.J. Paul, T. Boxhammer, E. Von der Esch, M. Graco, K.G. Schulz, E. Achterberg, P. Aguayo, J. Arístegui, P. Ayón, I. Baños, A. Bernales, A.S. Boegeholz, F. Chavez, G. Chavez, S.M. Chen, K. Doering, A. Filella, M. Fischer, P. Grasse, M. Haunost, J. Hennke, N. Hernández-Hernández, M. Hopwood, M. Igarza, V. Kalter, L. Kittu, P. Kohnert, J. Ledesma, C. Lieberum, S. Lischka, C. Löscher, A. Ludwig, U. Mendoza, J. Meyer, J. Meyer, F. Minutolo, J.O. Cortes, J. Piiparinen, C. Sforna, K. Spilling, S. Sanchez, C. Spisla, M. Sswat, M. Zavala Moreira, and U. Riebesell. 2020. Factors controlling plankton community production, export flux, and particulate matter stoichiometry in the coastal upwelling system off Peru. Biogeosciences, 17: 4831–4852. https://doi.org/10.5194/bg-17-4831-2020
Djurhuus, A., C.J. Closek, R.P. Kelly, K.J. Pitz, R.P. Michisaki, H.A. Starks, K.R. Walz, E.A. Andruszkiewicz, E. Olesin, K.A. Hubbard, E. Montes, D. Otis, F.E. Muller-Karger, F.P. Chavez, A.B. Boehm, and M. Breitbart. 2020. Environmental DNA reveals seasonal shifts and potential interactions in a marine community. Nature Communications, 11: 1–9. https://doi.org/10.1038/s41467-019-14105-1
Fiechter, J., J. Santora, F.P. Chavez, D. Northcott, and M. Messié, 2020. Krill hotspot formation and phenology in the California Current Ecosystem. Geophysical Research Letters, 47(13): 1–10. https://doi.org/10.1029/2020GL088039
Guo, L., P. Xiu, F. Chai, and F. Chavez. 2020. Modeled Dynamics of Physical and Biological Processes in the Central California Current System From 1993 to 2016. Journal of Geophysical Research: Oceans, 125(5): e2019JC015664. https://doi.org/10.1029/2019JC015664
Reji, L., B.B. Tolar, F.P. Chavez, and C.A. Francis. 2020. Depth-differentiation and seasonality of planktonic microbial assemblages in the Monterey Bay upwelling system. Frontiers in Microbiology, 11: 1–14. https://dx.doi.org/10.3389%2Ffmicb.2020.01075
Tolar, B.B., L. Reji, J.M. Smith, M. Blum, J.T. Pennington, F.P. Chavez, and C.A. Francis. 2020. Time series assessment of Thaumarchaeota ecotypes in Monterey Bay reveals the importance of water column position in predicting distribution–environment relationships. Limnology and Oceanography, 65: 2041–2055. https://doi.org/10.1002/lno.11436
Kolody, B.C., J.P. McCrow, L. Zeigler Allen, F.O. Aylward, K.M. Fontanez, A. Moustafa, M. Moniruzzaman, F.P. Chavez, C.A. Scholin, E.E. Allen, A.Z. Worden, E.F. DeLong, and A.E. Allen. 2019. Diel transcriptional response of a California Current plankton microbiome to light, low iron, and enduring viral infection. The ISME Journal, 13: 2817–2833. https://doi.org/10.1038/s41396-019-0472-2
Miller, S., A. Rassweiler, L. Dee, K.M. Kleisner, T. Mangin, R. Oliveros-Ramos, J. Tam, F.P. Chavez, M. Ñiquen, S.E. Lester, M. Burden, S. Gaines, and C. Costello. 2019. Optimal harvest responses to environmental forecasts depend on resource knowledge and how it can be used. Canadian Journal of Fisheries and Aquatic Sciences, 76: 1495–1502. https://doi.org/10.1139/cjfas-2018-0283
Northcott, D., J. Sevadjian, D.A. Sancho-Gallegos, C. Wahl, G. Friederich, and F.P. Chavez. 2019. Impacts of urban carbon dioxide emissions on sea-air flux and ocean acidification in nearshore waters. PLoS ONE, 14(3): e0214403. https://doi.org/10.1371/journal.pone.0214403
Reji, L., B.B. Tolar, J.M. Smith, F.P. Chavez, and C.A. Francis. 2019. Depth distributions of Nitrite Reductase (nirK) Gene Variants Reveal Spatial Dynamics of Thaumarchaeal Ecotype Populations in Coastal Monterey Bay. Environmental Microbiology, 21(11): 4032–4045. https://doi.org/10.1111/1462-2920.14753
Reji, L., B.B. Tolar, J.M. Smith, F.P. Chavez, and C.A. Francis. 2019. Differential co-occurrence relationships shaping ecotype diversification within Thaumarchaeota populations in the coastal ocean water column. The ISME Journal, 13: 1144–1158. https://doi.org/10.1038/s41396-018-0311-x
Ryan, J.P., D.E. Cline, J.E. Joseph, T. Margolina, J.A. Santora, R.M. Kudela, F.P. Chavez, J.T. Pennington, C. Wahl, R. Michisaki, K.J. Benoit-Bird, K.A. Forney, A.K. Stimpert, A. DeVogelaere, N. Black, and M. Fischer. 2019. Humpback whale song occurrence reflects ecosystem variability in feeding and migratory habitat of the northeast Pacific. PLoS ONE, 14: 1–24. https://doi.org/10.1371/journal.pone.0222456
Todd, R.E., F.P. Chavez, S. Clayton, S. Cravatte, M. Goes, M. Graco, X. Lin, J. Sprintall, N.V. Zilberman, M. Archer, J. Arístegui, M. Balmaseda, J.M. Bane, M.O. Baringer, J.A. Barth, L.M. Beal, P. Brandt, P.H.R. Calil, E. Campos, L.R. Centurioni, M.P. Chidichimo, M. Cirano, M.F. Cronin, E.N. Curchitser, R.E. Davis, M. Dengler, B. deYoung, S. Dong, R. Escribano, A.J. Fassbender, S.E. Fawcett, M. Feng, G.J. Goni, A.R. Gray, D. Gutiérrez, D. Hebert, R. Hummels, S. Ito, M. Krug, F. Lacan, L. Laurindo, A. Lazar, C.M. Lee, M. Lengaigne, N.M. Levine, J. Middleton, I. Montes, M. Muglia, T. Nagai, H.I. Pavelsky, J.B. Palter, H.E. Phillips, A. Piola, A.J. Plueddemann, B. Qiu, R.R. Rodrigues, M. Roughan, D.L. Rudnick, R.R. Rykaczewski, M. Saraceno, H. Seim, A.S. Gupta, L. Shannon, B.M. Sloyan, A.J. Sutton, L. Thompson, A.K. van der Plas, D. Volkov, J. Wilkin, D. Zhang, and L. Zhang. 2019. Global perspectives on observing ocean boundary current systems. Frontiers in Marine Science, 6: 1–38. https://doi.org/10.3389/fmars.2019.00423
Yamahara, K.M., C.M. Preston, J. Birch, K.R. Walz, R. Marin III, S. Jensen, D. Pargett, B. Roman, W. Ussler III, Y. Zhang, J. Ryan, B. Hobson, B. Kieft, B.Y. Raanan, K.D. Goodwin, F.P. Chavez, and C.A. Scholin. 2019. In situ Autonomous Acquisition and Preservation of Marine Environmental DNA Using an Autonomous Underwater Vehicle. Frontiers in Marine Science, 6: 1–14. https://doi.org/10.3389/fmars.2019.00373
Zhang, Y., C. Rueda, B. Kieft, J.P. Ryan, C. Wahl, T.C. O'Reilly, T. Maughan, and F.P. Chavez. 2019. Autonomous tracking of an oceanic thermal front by a Wave Glider. Journal of Field Robotics, 36(5): 940–954. https://doi.org/10.1002/rob.21862
Zhang, Y., J.P. Ryan, B. Kieft, B.W. Hobson, R.S. McEwen, M.A. Godin, J.B. Harvey, B. Barone, J.G. Bellingham, J.M. Birch, C.A. Scholin, and F.P. Chavez. 2019. Targeted sampling by autonomous underwater vehicles. Frontiers in Marine Science, 6: 1–12. https://doi.org/10.3389/fmars.2019.00415
Branch, A., M.M. Flexas, B. Claus, A.F. Thompson, Y. Zhang, E.B. Clark, S. Chien, D. Fratantoni, J.C. Kinsey, B. Hobson, B. Kieft, and F.P. Chavez. 2018. Front delineation and tracking with multiple underwater vehicles. Journal of Field Robotics, 36(3): 568–586. https://doi.org/10.1002/rob.21853
Breitburg, D., L.A. Levin, A. Oschlies, M. Grégoire, F.P. Chavez, D.J. Conley, V. Garçon, D. Gilbert, D. Gutiérrez, K. Isensee, G.S. Jacinto, K.E. Limburg, I. Montes, S.W.A. Naqvi, G.C. Pitcher, N.N. Rabalais, M.R. Roman, K.A. Rose, B.A. Seibel, M. Telszewski, M. Yasuhara, and J. Zhang. 2018. Declining oxygen in the global ocean and coastal waters. Science, 359: 13. https://doi.org/10.1126/science.aam7240
Castro, C.G., F.P. Chavez, J.T. Pennington, R. Durazo, and C.A. Collins. 2018. Temporal variability of downward fluxes of organic carbon off Monterey Bay. Deep Sea Research Part II Topical Studies in Oceanography, 151: 89–101. https://doi.org/10.1016/j.dsr2.2018.07.001
Chavez, F.P., C.A. Collins, and K.H. Coale. 2018. Studies of the California Current, Part 3. Deep Sea Research Part II: Topical Studies in Oceanography, 151: 146. https://doi.org/10.1016/j.dsr2.2018.05.002
Chavez, F.P., J. Sevadjian, C. Wahl, J. Friederich, and G.E. Friederich. 2018. Measurement of pCO2 and pH from an autonomous surface vehicle in a coastal upwelling system. Deep Sea Research Part II Topical Studies in Oceanography, 151: 137–146. https://doi.org/10.1016/j.dsr2.2017.01.001
Coale, K., M. Prince, R. Muller, S. Lamerdin, F.P. Chavez, and C. Collins. 2018. Introduction to the California Current Studies, Part 3, including a brief description of R/V Point Sur and her contributions to graduate research and education, 1986-2016. Deep Sea Research Part II Topical Studies in Oceanography, 151: 1–3. https://doi.org/10.1016/j.dsr2.2018.05.002
Hobson, B., B. Kieft, B.Y. Raanan, Y. Zhang, J. Birch, J.P. Ryan, and F.P. Chavez. 2018. An autonomous vehicle-based open ocean Lagrangian observatory. 2018 IEEE OES Autonomous Underwater Vehicle Symposium, Porto, 6–9 November 2018. IEEE Oceanic Engineering Society, Laboratório de Sistemas e Tecnologia Subaquática, Universidade do Porto.
Jones, B., F.P. Chavez, B. Kieft, T. O'Reilly, and C. Wahl. 2018. Field results from point to point real-time underwater acoustic tracking using a simple mathematical filter. 2018 IEEE OES Autonomous Underwater Vehicle Symposium, Porto, 6–9 November 2018. IEEE Oceanic Engineering Society, Laboratório de Sistemas e Tecnologia Subaquática, Universidade do Porto.
Muller-Karger, F.E., P. Miloslavich, N.J. Bax, S. Simmons, M.J. Costello, I.S. Pinto, G. Canonico, W. Turner, M. Gill, E. Montes, B.D. Best, J. Pearlman, P. Halpin, D. Dunn, A. Benson, C.S. Martin, L.V. Weatherdon, W. Appeltans, P. Provoost, E. Klein, C.R. Kelble, R.J. Miller, F.P. Chavez, K. Iken, S. Chiba, D. Obura, L.M. Navarro, H.M. Pereira, V. Allain, S. Batten, L. Benedetti-Checchi, J.E. Duffy, R.M. Kudela, L. Rebelo, Y. Shin, and G. Geller. 2018. Advancing Marine Biological Observations and Data Requirements of the Complementary Essential Ocean Variables (EOVs) and Essential Biodiversity Variables (EBVs) Frameworks. Frontiers in Marine Science, 5: 1–15. https://doi.org/10.3389/fmars.2018.00211
Nielsen, K., J. Stachowicz, H. Carter, K. Boyer, M. Bracken, F. Chan, F. Chavez, K. Hovel, M. Kent, K. Nickols, J. Ruesink, J. Tyburczy, and S. Wheeler. 2018. Emerging understanding of the potential role of seagrass and kelp as an ocean acidification management tool in California. California Ocean Science Trust. https://www.oceansciencetrust.org/projects/sav/
Pennington, J.T., and F.P. Chavez. 2018. Decade-scale oceanographic fluctuation in Monterey Bay, California, 1989-2011. Deep Sea Research Part II Topical Studies in Oceanography, 151: 4–15. https://doi.org/10.1016/j.dsr2.2017.07.005
Pitz, K., J. Closek, A. Djurhuus, R.P. Michisaki, K.R. Walz, H. Starks, A.B. Boehm, M. Breitbart, R.P. Kelly, and F.P. Chavez. 2018. Tracking biological communities using 'omics: Examples from Monterey Bay combining different sequencing-based approaches. Workshop on enhancing interoperability & coordination of long-term omics observations, Bremen, February 21–23 2018. AtlantOS, Agriculture and Agri-Food Canada, Genome Canada.
Ren, A.S., F. Chai, H. Xue, D.M. Anderson, and F.P. Chavez. 2018. A sixteen-year decline in dissolved oxygen in the central California Current. Scientific Reports, 8(7290): 1–9. https://doi.org/10.1038/s41598-018-25341-8
Andruszkiewicz, E.A., H.A. Starks, F.P. Chavez, L.M. Sassoubre, B.A. Block, and A.B. Boehm. 2017. Biomonitoring of marine vertebrates in Monterey Bay using eDNA metabarcoding. PLoS One, 12: e0176343. http://dx.doi.org/10.1371/journal.pone.0176343
Chavez, F.P., J. Sevadjian, C. Wahl, J. Friederich, and G.E. Friederich. 2017. Measurements of pCO2 and pH from an autonomous surface vehicle in a coastal upwelling system. Deep Sea Research Part II: Topical Studies in Oceanography, 151: 137–146. http://dx.doi.org/10.1016/j.dsr2.2017.01.001
Chavez, F.P., J.T. Pennington, R.P. Michisaki, M. Blum, G.M. Chavez, J. Friederich, B. Jones, B. Herlien, B. Kieft, B. Hobson, A.S. Ren, J. Ryan, J.C. Sevadjian, C. Wahl, K.R. Walz, K. Yamahara, G.E. Friederich, and M. Messié. 2017. Climate variability and change: Response of a coastal ocean ecosystem. Oceanography, 30: 128–145. https://doi.org/10.5670/oceanog.2017.429
Chavez, F.P., P.G. Brewer, and C.A. Scholin. 2017. Celebrating 30 years of ocean science technology at the Monterey Bay Aquarium Research Institute. Oceanography, 30: 18–25. https://doi.org/10.5670/oceanog.2017.420
Chavez, F.P., P.G. Brewer, and C.A. Scholin. Special issue on celebrating 30 years of ocean science and technology at the Monterey Bay Aquarium Research Institute. Oceanography, 30. https://tos.org/oceanography/issue/volume-30-issue-04
Manning, C.C., R.H.R. Stanley, D.P. Nicholson, J.M. Smith, J.T. Pennington, M.R. Fewings, M.E. Squibb, and F.P. Chavez. 2017. Impact of recently upwelled water on productivity investigated using in situ and incubation-based methods in Monterey Bay. Journal of Geophysical Research-Oceans, 122: 1901–1926. http://dx.doi.org/10.1002/2016JC012306
Messié, M., and F.P. Chavez. 2017. Nutrient supply, surface currents, and plankton dynamics predict zooplankton hotspots in coastal upwelling systems. Geophysical Research Letters, 44: 8979–8986. http://dx.doi.org/10.1002/2017GL074322
Ryan, J.P., R.M. Kudela, J.M. Birch, M. Blum, H.A. Bowers, F.P. Chavez, G.J. Doucette, K. Hayashi, R. Marin III, C.M. Mikulski, T. Pennington, C.A. Scholin, G.J. Smith, A. Woods, and Y. Zhang. 2017. Causality of an extreme harmful algal bloom in Monterey Bay, California, during the 2014–2016 northeast Pacific warm anomaly. Geophysical Research Letters, 44: 5571–5579. https://doi.org/10.1002/2017GL072637
Sakamoto, C.M., K.S. Johnson, L.J. Coletti, T.L. Maurer, G. Massion, J.T. Pennington, J.N. Plant, H.W. Jannasch, and F.P. Chavez. 2017. Hourly in situ nitrate on a coastal mooring: A 15-year record and insights into new production. Oceanography, 30: 114–127. https://doi.org/10.5670/oceanog.2017.428
Zhang, Yanwu, B. Kieft, M.J. Stanway, R.S. McEwen, B.W. Hobson, J.G. Bellingham, J.P. Ryan, T.C. O'Reilly, B.Y. Raanan, M. Messié, J.M. Smith, and F.P. Chavez. 2017. Isotherm tracking by an autonomous underwater vehicle in drift mode. IEEE Journal of Oceanic Engineering, 42: 808–817. http://dx.doi.org/10.1109/JOE.2016.2625058
Kavanaugh, M.T., M.J. Oliver, F.P. Chavez, R.M. Letelier, F.E. Muller-Karger, and S.C. Doney. 2016. Seascapes as a new vernacular for pelagic ocean monitoring, management and conservation. ICES Journal of Marine Science, 73: 1839–1850. http://dx.doi.org/10.1093/icesjms/fsw086
Kroeker, K.J., E. Sanford, J.M. Rose, C.A. Blanchette, F. Chan, F.P. Chavez, B. Gaylord, B. Helmuth, T.M. Hill, G.E. Hofmann, M.A. McManus, B.A. Menge, K.J. Nielsen, P.T. Raimondi, A.D. Russell, and L. Washburn. 2016. Interacting environmental mosaics drive geographic variation in mussel performance and predation vulnerability. Ecology Letters, 19: 771–779. http://dx.doi.org/10.1111/ele.12613
Mariano-Matias, M., G. Gaxiola-Castro, M.E. De la Cruz-Orozco, and F.P. Chavez. 2016. Seasonal air–sea CO2 fluxes in the southern California Current off the Baja California Peninsula (Mexico). Ciencias Marinas, 42: 157–177. http://dx.doi.org/10.7773/cm.v42i3.2651
Zhang, Y., B. Kieft, C. Rueda, T. O'Reilly, J. Ryan, T. Maughan, C. Wahl, and F. Chavez. 2016. Autonomous front tracking by a Wave Glider. Marine Technology Society / Institute of Electrical and Electronics Engineers Oceans Conference, 2016: 1–4. http://dx.doi.org/10.1109/OCEANS.2016.7761070
Ziccarelli, L., R. Dellor, R. Johnson, H. Schmitz, T. O'Reilly, and F. Chavez. 2016. A novel method of obtaining near real-time observations of phytoplankton from a mobile autonomous platform. Marine Technology Society / Institute of Electrical and Electronics Engineers Oceans Conference, 2016: 1–5. http://dx.doi.org/10.1109/OCEANS.2016.7761230
Aylward, F.O., J.M. Eppley, J.M. Smith, F.P. Chavez, C.A. Scholin, and E.F. DeLong. 2015. Microbial community transcriptional networks are conserved in three domains at ocean basin scales. Proceedings of the National Academy of Sciences, 112: 5443–5448. http://dx.doi.org/10.1073/pnas.1502883112
Hughes, B.B., M.D. Levey, M.C. Fountain, A.B. Carlisle, F.P. Chavez, and M.G. Gleason. 2015. Climate mediates hypoxic stress on fish diversity and nursery function at the land-sea interface. Proceedings of the National Academy of Sciences, 112: 8025–8030. http://dx.doi.org/10.1073/pnas.1505815112
Messié, M., and F.P. Chavez. 2015. Seasonal regulation of primary production in eastern boundary upwelling systems. Progress in Oceanography, 134: 1–18. http://dx.doi.org/10.1016/j.pocean.2014.10.011
Pennington, J.T., M. Blum, and F.P. Chavez. 2015. Seawater sampling by an autonomous underwater vehicle: “Gulper” sample validation for nitrate, chlorophyll, phytoplankton, and primary production. Limnology and Oceanography: Methods, 14: 14–23. http://dx.doi.org/10.1002/lom3.10065
Smith, J.M., J. Damashek, F.P. Chavez, and C.A. Francis. 2015. Factors influencing nitrification rates and the abundance and transcriptional activity of ammonia-oxidizing microorganisms in the dark northeast Pacific Ocean. Limnology and Oceanography, 62: 596–609. http://dx.doi.org/10.1002/lno.10235
Xu, Y., K.A. Rose, F. Chai, F.P. Chavez, and P. Ayón. 2015. Does spatial variation in environmental conditions affect recruitment? A study using a 3-D model of Peruvian anchovy. Progress in Oceanography, 138: 417–430. http://dx.doi.org/10.1016/j.pocean.2015.04.002
Doney, S., A.A. Rosenburg, M. Alexander, F. Chavez, C.D. Harvell, G. Hoffmann, M. Orback, and M. Rucklehaus. 2014. Oceans and Marine Resources. In Climate Change Impacts in the United States: The Third National Climate Assessment, 2014: 557–558. http://dx.doi.org/10.7930/J0RF5RZW
Fiechter, J., E.N. Curchitser, C.A. Edwards, F. Chai, N.L. Goebel, and F.P. Chavez. 2014. Air-sea CO2 fluxes in the California Current: Impacts of model resolution and coastal topography. Global Biogeochemical Cycles, 28: 371–385. http://dx.doi.org/10.1002/2013GB004683
Guo, L., F. Chai, P. Xiu, H. Xue, S. Rao, Y. Liu, and F.P. Chavez. 2014. Seasonal dynamics of physical and biological processes in the central California Current System: A modeling study. Ocean Dynamics, 64: 1137–1153. http://dx.doi.org/10.1007/s10236-014-0721-x
Howard, M.K., F.C. Gayanilo, C.A. Rueda, S.R. Smith, T.A. Chavez, and J.C. Gilbeaut. 2014. What's in a name? Vocabularies for search, browse and interoperability. Proceedings of 2014 Gulf of Mexico Oil Spill & Ecosystem Science Conference, Mobile, Alabama, 26–29 January 2014.
Muller-Karger, F.E., M.T. Kavanaugh, E. Montes, W.M. Balch, M. Breitbart, F.P. Chavez, S.C. Doney, E.M. Johns, R.M. Letelier, M.W. Lomas, H.M. Sosik, and A.E. White. 2014. Commentary: A framework for a marine biodiversity observing network within changing continental shelf seascapes. Oceanography, 27: 18–23. http://dx.doi.org/10.5670/oceanog.2014.56
Ryan, J.P., M.A. McManus, R.M. Kudela, M.L. Artigas, J.G. Bellingham, F.P. Chavez, G. Doucette, D. Foley, M. Godin, J.B.J. Harvey, R. Marin III, M. Messié, C. Mikulski, T. Pennington, F. Py, K. Rajan, I. Shulman, Z. Wang, and Y. Zhang. 2014. Boundary influences on HAB phytoplankton ecology in a stratification-enhanced upwelling shadow. Deep Sea Research Part II: Topical Studies in Oceanography, 101: 63–79. http://dx.doi.org/10.1016/j.dsr2.2013.01.017
Smith, J.M., F.P. Chavez, and C.A. Francis. 2014. Ammonium uptake by phytoplankton regulates nitrification in the sunlit ocean. PLoS ONE, 9: 1–9. http://dx.doi.org/10.1371/journal.pone.0108173
Smith, J.M., K.L. Casciotti, F.P. Chavez, and C.A. Francis. 2014. Differential contributions of archaeal ammonia oxidizer ecotypes to nitrification in coastal surface waters. ISME Journal, 8: 1704–1714. http://dx.doi.org/10.1038/ismej.2014.11
Sudek, S., R.C. Everroad, A.M. Gehman, J.M. Smith, C.L. Poirier, F.P. Chavez, and A.Z. Worden. 2014. Cyanobacterial distributions along a physico-chemical gradient in the Northeastern Pacific Ocean. Environmental Microbiology, 17(10): 3692–3707. http://dx.doi.org/10.1111/1462-2920.12742
Sutton, A.J., R.A. Feely, C.L. Sabine, M.J. McPhaden, T. Takahashi, F.P. Chavez, G.E. Friederich, and J.T. Mathis. 2014. Natural variability and anthropogenic change in equatorial Pacific surface ocean pCO2 and pH. Global Biogeochemical Cycles, 28: 131–145. http://dx.doi.org/10.1002/2013GB004679
Berdalet, E., M.A. McManus, O.N. Ross, H. Burchard, F.P. Chavez, J.S. Jaffe, I.R. Jenkinson, R. Kudela, I. Lips, U. Lips, A. Lucas, D. Rivas, R.M.C. la Torre, J. Ryan, J.M. Sullivan, and H. Yamazaki. 2013. Understanding harmful algae in stratified systems: Review of progress and future directions. Deep Sea Research II, 101: 4–20. http://dx.doi.org/10.1016/j.dsr2.2013.09.042
Gomes, K., D. Cline, D. Edgington, M. Godin, T. Maughan, M. McCann, T. O'Reilly, F. Bahr, F. Chavez, M. Messié, J. Das, and K. Rajan. 2013. ODSS: A decision support system for ocean exploration. Proceedings of the Workshop on Data-Driven Decision Guidance and Support Systems (DGSS), 29th Institute of Electrical and Electronics Engineers International Conference on Data Engineering 2013, Brisbane, QLD, Australia, 8–12 April 2013.
Messié, M., and F.P. Chavez. 2013. Physical-biological synchrony in the global ocean associated with recent variability in the central and western equatorial Pacific. Journal of Geophysical Research, 118: 3782–3794. http://dx.doi.org/10.1002/jgrc.20278
Ottesen, E.A., C.R. Young, J.M. Eppley, J.P. Ryan, F.P. Chavez, C.A. Scholin, and E.F. DeLong. 2013. Pattern and synchrony of gene expression among sympatric marine microbial populations. Proceedings of the National Academy of Sciences, 110: E488–E497. http://dx.doi.org/10.1073/pnas.1222099110
Santora, J.A., W.J. Sydeman, M. Messié, F. Chai, Y. Chao, S.A. Thompson, B.K. Wells, and F.P. Chavez. 2013. Triple check: Observations verify structural realism of an ocean ecosystem model. Geophysical Research Letters, 40: 1367–1372. http://dx.doi.org/10.1002/grl.50312
Xu, Y., F. Chai, K.A. Rose, M. Niquen, and F.P. Chavez. 2013. Environmental influences on the interannual variation and spatial distribution of Peruvian anchovy (Engraulis ringens) population dynamics from 1991 to 2007: A three-dimensional modeling study. Ecological Modelling, 264: 64–82. https://doi.org/10.1016/j.ecolmodel.2013.01.009
Bjorkstedt, E.P., R. Goericke, S. McClatchie, E. Weber, W. Watson, N. Lo, W.T. Peterson, R.D. Brodeur, T. Auth, J. Fisher, C. Morgan, J. Peterson, J. Largier, S.J. Bograd, R. Durazo, G. Gaxiola-Castro, B. Lavaniegos, F.P. Chavez, C.A. Collins, B. Hannah, J. Field, K. Sakuma, W. Satterthwaite, M. O'Farrell, S. Hayes, J. Harding, W.J. Sydeman, S.A. Thompson, P. Warzybok, R. Bradley, J. Jahncke, R.T. Golightly, S.R. Schneider, R.M. Suryan, A.J. Gladics, C.A. Horton, S.Y. Kim, S.R. Melin, R.L. DeLong, and J. Abell. 2012. State of the California Current 2011–2012: ecosystems respond to local forcing as La Niña wavers and wanes. California Cooperative Oceanic Fisheries Investigations Reports, 53: 41–76.
Buitenhuis, E.T., W.K.W. Li, D. Vaulot, M.W. Lomas, M. Landry, F. Partensky, D.M. Karl, O. Ulloa, L. Campbell, S. Jacquet, F. Lantoine, F. Chavez, D. Macias, M. Gosselin, and G.B. McManus. 2012. Picophytoplankton biomass distribution in the global ocean. Earth System Science Data Discussions, 5: 221–242. http://dx.doi.org/10.5194/essdd-5-221-2012
Chavez, F.P. 2012. Climate change and marine ecosystems. Proceedings of the National Academy of Sciences of the United States of America, 109: 19045–19046. http://dx.doi.org/10.1073/pnas.1217112109
Frolov, S., J.P. Ryan, and F.P. Chavez. 2012. Predicting euphotic-depth-integrated chlorophyll-a from discrete depth and satellite-observable chlorophyll-a off central California . Journal of Geophysical Research, 117(C5): 1–7. http://dx.doi.org/10.1029/2011JC007322
Gomez, F., A. Montecinos, S. Hormazabal, L.A. Cubillos, M. Correa-Ramirez, and F.P. Chavez. 2012. Impact of spring upwelling variability off southern-central Chile on common sardine (Strangomera bentincki) recruitment. Fisheries Oceanography, 21: 405–414. http://dx.doi.org/10.1111/j.1365-2419.2012.00632.x
Hales, B., P.G. Strutton, M. Saraceno, R. Letelier, T. Takahashi, R. Feely, C. Sabine, and F. Chavez. 2012. Satellite-based prediction of pCO2 in coastal waters of the eastern North Pacific. Progress in Oceanography, 103: 1–15. http://dx.doi.org/10.1016/j.pocean.2012.03.001
Jolliff, J.K., R.W. Gould Jr., B. Penta, W.J. Teague, S. DeRada, F.P. Chavez, and R.A. Arnone. 2012. Water mass bio-optical properties in the Monterey Bay region: Fluorescence-based inference of shifts in phytoplankton photophysiology. Journal of Geophyiscal Research: Oceans, 117: 1–16. http://dx.doi.org/10.1029/2011JC007568
Messié, M., and F.P. Chavez. 2012. A global analysis of ENSO synchrony: The oceans' biological response to physical forcing. Journal of Geophyiscal Research, 117(C9): 1–19. http://dx.doi.org/10.1029/2012JC007938
Pfeil, B., A. Olsen, D.C.E. Bakker, S. Hankin, H. Koyuk, A. Kozyr, J. Malczyk, A. Manke, N. Metzl, C.L. Sabine, J. Akl, S.R. Alin, R.G.J. Bellerby, A. Borges, J. Boutin, P.J. Brown, W.J. Cai, F.P. Chavez, A. Chen, C. Cosca, A.J. Fassbender, R.A. Feely, M. González-Dávila, C. Goyet, N. Hardman-Mountford, C. Heinze, M. Hood, M. Hoppema, C.W. Hunt, D. Hydes, M. Ishii, T. Johannessen, S.D. Jones, R.M. Key, A. Körtzinger, P. Landschützer, S.K. Lauvset, N. Lefèvre, A. Lenton, A. Lourantou, L. Merlivat, T. Midorikawa, L. Mintrop, C. Miyazaki, A. Murata, A. Nakadate, Y. Nakano, S. Nakaoka, Y. Nojiri, A.M. Omar, X.A. Padin, G.H. Park, K. Paterson, F.F. Perez, D. Pierrot, A. Poisson, A.F. Ríos, J.M. Santana-Casiano, J. Salisbury, V.V.S.S. Sarma, R. Schlitzer, B. Schneider, U. Schuster, R. Sieger, I. Skjelvan, T. Steinhoff, T. Suzuki, T. Takahashi, K. Tedesco, M. Telszewski, H. Thomas, B. Tilbrook, J. Tjiputra, D. Vandemark, T. Veness, R. Wanninkhof, A.J. Watson, R. Weiss, C.S. Wong, and H. Yoshikawa-Inoue. 2012. A uniform, quality controlled Surface Ocean CO2 Atlas (SOCAT). Earth System Science Data Discussions, 5: 735–780. http://dx.doi.org/10.5194/essdd-5-735-2012
Sabine, C.L., S. Hankin, H. Koyuk, D.C.E. Bakker, B. Pfeil, A. Olsen, N. Metzl, A. Kozyr, A. Fassbender, A. Manke, J. Malczyk, J. Akl, S.R. Alin, R.G.J. Bellerby, A. Borges, J. Boutin, P.J. Brown, W.J. Cai, F.P. Chavez, A. Chen, C. Cosca, R.A. Feely, M. González-Dávila, C. Goyet, N. Hardman-Mountford, C. Heinze, M. Hoppema, C.W. Hunt, D. Hydes, M. Ishii, T. Johannessen, R.M. Key, A. Körtzinger, P. Landschützer, S.K. Lauvset, N. Lefèvre, A. Lenton, A. Lourantou, L. Merlivat, T. Midorikawa, L. Mintrop, C. Miyazaki, A. Murata, A. Nakadate, Y. Nakano, S. Nakaoka, Y. Nojiri, A.M. Omar, X.A. Padin, G.H. Park, K. Patterson, F.F. Perez, D. Pierrot, A. Poisson, A.F. Ríos, J. Salisbury, J.M. Santana-Casiano, V.V.S.S. Sarma, R. Schlitzer, B. Schneider, U. Schuster, R. Sieger, I. Skjelvan, T. Steinhoff, T. Suzuki, T. Takahashi, K. Tedesco, M. Telszewski, H. Thomas, B. Tilbrook, D. Vandemark, T. Veness, A.J. Watson, R. Weiss, C.S. Wong, and H. Yoshikawa-Inoue. 2012. Surface Ocean CO2 Atlas (SOCAT) gridded data products. Earth System Science Data Discussions, 5: 781–804. http://dx.doi.org/10.5194/essdd-5-781-2012
Bertrand, A., A. Chaigneau, S. Peraltilla, J. Ledesma, M. Graco, F. Monetti, and F.P. Chavez. 2011. Oxygen: A fundamental property regulating pelagic ecosystem structure in the Coastal Southeastern Tropical Pacific. PLoS ONE, 6: E29558. http://dx.doi.org/10.1371/journal.pone.0029558
Castro, C.G., C.A. Collins, J.T. Pennington, D. Zuniga, and F.P. Chavez. 2011. Spatial distribution and offshore export of total organic carbon along the eastern boundary of the Subtropical North Pacific. Advances in Oceanography and Limnology, 2: 93–106. http://dx.doi.org/10.1080/19475721.2011.626941
Chavez, F.P., M. Messié, and J.T. Pennington. 2011. Marine primary production in relation to climate variability and change. Annual Review of Marine Science, 3: 227–260. http://dx.doi.org/10.1146/annurev.marine.010908.163917
Field, D.B., F. Chavez, C.B. Lange, and P.E. Smith. 2011. Variations in fisheries and complex ocean environments. Shifting Baselines, 2: 59–76. http://dx.doi.org/10.5822/978-1-61091-029-3_5
Messié, M., and F.P. Chavez. 2011. Global modes of sea surface temperature variability in relation to regional climate indices. Journal of Climate, 24: 4314–4331. http://dx.doi.org/10.1175/2011JCLI3941.1
Paerl, R.W., K.A. Turk, R.A. Beinart, F.P. Chavez, and J.P. Zehr. 2011. Seasonal change in the abundance of Synechococcus and multiple distinct phylotypes in Monterey Bay determined by rbcL and narB quantitative PCR. Environmental Microbiology, 14: 580–593. http://dx.doi.org/10.1111/j.1462-2920.2011.02594.x
Paerl, R.W., K.S. Johnson, R.M. Welsh, A.Z. Worden, F.P. Chavez, and J.P. Zehr. 2011. Differential distributions of Synechococcus subgroups across the California current system. Frontiers in Aquatic Microbiology, 2: 1–22. http://dx.doi.org/10.3389/fmicb.2011.00059
Bjorkstedt, E.P., R. Goericke, S. McClatchie, E. Weber, W. Watson, N. Lo, B. Peterson, B. Emmett, J. Peterson, R. Durazo, G. Gaxiola-Castro, F.P. Chavez, J.T. Pennington, C.A. Collins, J. Field, S. Ralston, K. Sakuma, S.J. Bograd, F.B. Schwing, Y. Xue, W.J. Sydeman, S.A. Thompson, J.A. Santora, J. Largier, C. Halle, S. Morgan, S.Y. Kim, K.P.B. Merkens, J.A. Hildebrand, and L.M. Munger. 2010. State of the California Current 2009-2010: Regional variation persists through transition from la Niña to el Niño (and back?). California Cooperative Oceanic Fisheries Investigations Report, 51: 39–69.
Cuvelier, M.L., A.E. Allen, A. Monier, J.P. McCrow, M. Messié, S.G. Tringe, T. Woyke, R.M. Welsh, T. Ishoey, J.H. Lee, B.J. Binder, C.L. DuPont, M. Latasa, C. Guigand, K.R. Buck, J. Hilton, M. Thiagarajan, E. Caler, B. Read, R.S. Lasken, F.P. Chavez, and A.Z. Worden. 2010. Targeted metagenomics and ecology of globally important uncultured eukaryotic phytoplankton. Proceedings of the National Academy of Sciences, 107: 14679–14684. http://dx.doi.org/10.1073/pnas.1001665107
Lester, S.E., K.L. McLeod, H. Tallis, M. Ruckelshaus, B.S. Halpern, P.S. Levin, F.P. Chavez, C. Pomeroy, B.J. McCay, C. Costello, S.D. Gaines, A.J. Mace, J.A. Barth, D.L. Fluharty, and J.K. Parrish. 2010. Science in support of ecosystem-based management for the U.S. west coast and beyond. Biological Conservation, 143: 576–587.
Pennington, J.T., C.A. Castro, C.A. Collins, W.W. Evans, G.E. Friederich, R. Michisaki, and F.P. Chavez. 2010. The northern and central California coastal upwelling system. In Carbon and Nutrient Fluxes in Continental Margins: A Global Synthesis, edited by K.K. Liu, 29–44. Berlin: Springer Verlag, 2010.
Chao, Y., Z. Li, J. Farrara, J.C. McWilliams, J.G. Bellingham, X. Capet, F.P. Chavez, J.K. Choi, R.E. Davis, J. Doyle, D. Fratantoni, P. Li, P. Marchesiello, M.A. Moline, J. Paduan, and S.R. Ramp. 2009. Development, implementation and evaluation of a data-assimilative ocean forecasting system off the central California coast. Deep-Sea Research Part II, 56: 100–126. http://dx.doi.org/10.1016/j.dsr2.2008.08.011
Chavez, F.P., and M. Messié. 2009. A comparison of eastern boundary upwelling ecosystems. Progress in Oceanography, 83: 80–96. http://dx.doi.org/10.1016/j.pocean.2009.07.032
Conaway, C.H., F.J. Black, M. Gault-Ringold, J.T. Pennington, F.P. Chavez, and A.R. Flegal. 2009. Dimethylmercury in coastal upwelling waters, Monterey Bay, California. Environmental Science & Technology, 43: 1305–1309.
Dickey, T., N. Bates, R.H. Byrne, G. Chang, F.P. Chavez, R.A. Feely, A.K. Hanson, D.M. Karl, D. Manov, C. Moore, C. Sabine, and R. Wanninkhof. 2009. The NOPP O-SCOPE and MOSEAN projects advanced sensing for ocean observing systems. Oceanography, 22: 168–181. http://dx.doi.org/10.5670/oceanog.2009.47