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Displaying 1-100 of 131 Publications

2024

Ahuja, N., X. Cao, D. T. Schultz, N. Picciani, A. Lord, S. Shao, K. Jia, D. R. Burdick, S. H. Haddock, Y. Li, and C. W. Dunn. 2024. Giants among Cnidaria: Large Nuclear Genomes and Rearranged Mitochondrial Genomes in Siphonophores. Genome Biology and Evolution, 16(3). https://doi.org/10.1093/gbe/evae048

Beckmann, L.M., B.A. Vincent, A. De León, J. Masterman, E.S. Lau, and S.H. Haddock. 2024. Fluorescence patterns and diversity of hydrozoans from Bocas del Toro, Panama. Ciencias Marinas, 50. https://doi.org/10.7773/cm.y2024.3409

Claes, J. M., S. H. Haddock, C. Coubris, and J. Mallefet. 2024. Systematic Distribution of Bioluminescence in Marine Animals: A Species-Level Inventory. Life, 14(4). https://doi.org/10.3390/life14040432

DeLeo D.M., M. Bessho-Uehara, S.H.D. Haddock, C.S. McFadden, and A.M. Quattrini. 2024. Evolution of bioluminescence in Anthozoa with emphasis on Octocorallia. Proceedings of the Royal Society B, 291(2021): 0232626. http://doi.org/10.1098/rspb.2023.2626

Hetherington, E.D., H.G. Close, S.H.D. Haddock, A. Damian-Serrano, C.W. Dunn, N.J. Wallsgrove, S.C. Doherty, and A.C. Choy. 2024. Vertical trophic structure and niche partitioning of gelatinous predators in a pelagic food web: Insights from stable isotopes of siphonophores. Limnology and Oceanography, 69(4): 902–919. https://doi.org/10.1002/lno.12536

Hosia, A., L. Martell, M. K. Mańko, S. H. Haddock, D. Haberlin, and G. M. Mapstone. 2024. Unexpected diversity and novel lineages in the cosmopolitan genus Nanomia (Cnidaria: Siphonophorae: Physonectae). Frontiers in Marine Science, 11(1421514). https://doi.org/10.3389/fmars.2024.1421514

Robison, B.H. and S.H.D. Haddock. 2024. Discovery and description of a remarkable bathypelagic nudibranch, Bathydevius caudactylus, gen. et. sp. nov. Deep Sea Research Part I: Oceanographic Research Papers, 214: 104414. https://doi.org/10.1016/j.dsr.2024.104414    

Winnikoff, J. R., D. Milshteyn, S. J. Vargas-Urbano, M. A. Pedraza-Joya, A. M. Armando, O. Quehenberger, A. Sodt, R. E Gillilan, E. A. Dennis, E. Lyman, S. H. D. Haddock, and I. Budin. 2024. Homeocurvature adaptation of phospholipids to pressure in deep-sea invertebrates. Science, 384(6703). https://doi.org/adm7607

2023

Haddock, S.H.D. Two Enigmatic phyla: Placozoa and Ctenophora; The Comb Jellies. In Invertebrates, edited by Brusca, Giribet, and Moore. Oxford University Press. 2023.

Mills, C.E., S.H.D. Haddock, and N. Bezio. Kingdom Animalia, phylum Ctenophora (comb jellies). In The Marine Biota of Aotearoa New Zealand. Updating our marine biodiversity inventory, edited by M. Kelly, S. Mills, M. Terezow, C. Sim-Smith, and W. Nelson. New Zealand, 2023.

Schultz, D.T., S.H. Haddock, J.V. Bredeson, R.E. Green, O. Simakov, and D.S. Rokhsar. 2023. Ancient gene linkages support ctenophores as sister to other animals. Nature: 1–8. https://doi.org/10.1038/s41586-023-05936-6

2022

Damian-Serrano, A., E.D. Hetherington, C.A. Choy, S.H.D. Haddock, A. Lapides, and C.W. Dunn. 2022. Characterizing the secret diets of siphonophores (Cnidaria: Hydrozoa) using DNA metabarcoding. PLOS ONE, 17(e0267761): 1–24. https://doi.org/10.1371/journal.pone.0267761

Hetherington, E.D., A. Damian-Serrano, S.H.D. Haddock, C.W. Dunn, and C.A. Choy. 2022. Integrating siphonophores into marine food-web ecology. Limnology and Oceanography Letters, 7: 81–95. https://doi.org/10.1002/lol2.10235

Hetherington, E.D., C.A. Choy,  E.V. Thuesen, and S.H.D. Haddock. 2022. Three distinct views of deep pelagic community composition based on complementary sampling approaches. Frontiers in Marine Science, 9(864004): 1–10. http://doi.org/10.3389/fmars.2022.864004

Johnson, S.B.,  J.R. Winnikoff,  D.T. Schultz,  L.M. Christianson,  W.L. Patry, C.E. Mills, and S.H.D. Haddock. 2022. Speciation of pelagic zooplankton: Invisible boundaries can drive isolation of oceanic ctenophores. Frontiers in Genetics, 13(970314): 1–17. https://doi.org/10.3389/fgene.2022.970314

Matsumoto, G.I., L.M. Christianson, B.H. Robison, S.H.D. Haddock, and S.B. Johnson. 2022. Atolla reynoldsi sp. nov. (Cnidaria, Scyphozoa, Coronatae, Atollidae): A new species of coronate Scyphozoan found in the Eastern North Pacific Ocean. Animals, 12: 1–21. https://doi.org/10.3390/ani12060742

2021

Christianson, L.M., S.B. Johnson, D.T. Schultz, and S.H.D. Haddock. 2021. Hidden diversity of Ctenophora revealed by new mitochondrial COI primers and sequences. Molecular Ecology Resources, 22: 283–294. https://doi.org/10.1111/1755-0998.13459

Damian-Serrano, A., S.H.D. Haddock, and C.W. Dunn. 2021. The evolution of siphonophore tentilla for specialized prey capture in the open ocean. Proceedings of the National Academy of Sciences, 118: 1–9. https://doi.org/10.1073/pnas.2005063118

Elor, A., T. Thang, B.P. Hughes, A. Crosby, A. Phung, E. Gonzalez, K. Katija, S.H.D. Haddock, B.E. Erwin, E.J. Martin, and L. Takayama. 2021. Catching jellies in immersive virtual reality: A comparative teleoperation study of ROVs in underwater capture tasks. Proceedings of the 27th ACM Symposium on Virtual Reality Software and Technology, VRST '21 (17): 1–10. https://doi.org/10.1145/3489849.3489861

Helm, R.R., N. Clark, H. Harden-Davies, D. Amon, P. Girguis, C. Bordehore, S. Earle, M.J. Gibbons, Y. Golbuu, S.H.D. Haddock, J.D.R. Houghton, J. Javidpour, D.J. McCauley, L. Morgan, D. Obura, E.A. Pakhomov, K.A. Pitt, J. Jimenez Ramon, R. Sumaila, and J.B. Thiebot. 2021. Protect high seas biodiversity. Science, 372: 1048–1049. https://doi.org/10.1126/science.abj0581

Meech, M.E., C.E. Mills, S.H.D. Haddock, and R.W. Meech. 2021. Two swimming modes in Trachymedusae; bell kinematics and the role of giant axons. Journal of Experimental Biology, 224: 1–12. https://doi.org/10.1242/jeb.239830

Miller, S.D., S.H.D. Haddock, W.C. Straka III, C.J. Seaman, C.L. Combs, M. Wang, W. Shi, and S. Nam. 2021. Honing in on bioluminescent milky seas from space. Scientific Reports, 11: 1–10. https://doi.org/10.1038/s41598-021-94823-z

Puente-Tapia, F.A., R. Gasca, A. Schiariti, and S.H.D. Haddock. 2021. An updated checklist of ctenophores (Ctenophora: Nuda and Tentaculata) of Mexican seas. Regional Studies in Marine Science, 41: 1–20. https://doi.org/10.1016/j.rsma.2020.101555

Schultz, D.T., W.R. Francis, J.D. McBroome, L.M. Christianson, S.H.D. Haddock, and R.E. Green. 2021. A chromosome-scale genome assembly and karyotype of the ctenophore Hormiphora californensis. G3 Genes|Genomes|Genetics, 11(11): 1–12. https://doi.org/10.1093/g3journal/jkab302

Damian-Serrano, A., S.H.D. Haddock, and C.W. Dunn. 2021. The evolutionary history of siphonophore tentilla: Novelties, convergence, and integration. Integrative Organismal Biology, 3: 1–21. https://doi.org/10.1093/iob/obab019

Stefanoudis, P. V., L.M. Biancani, S. Cambronero-Solano, M.R. Clark, J.T. Copley, E. Easton, F. Elmer, S.H.D. Haddock, S. Herrera, I.S. Iglesias, A.M. Quattrini, J. Sigwart, C. Yesson, and A.G. Glover. 2021. Moving conferences online: lessons learned from an international virtual meeting. Proceedings of the Royal Society B, 288: 1–7. https://doi.org/10.1098/rspb.2021.1769

Winnikoff, J.R., S.H.D. Haddock, and I. Budin. 2021. Depth- and temperature-specific fatty acid adaptations in ctenophores from extreme habitats. Journal of Experimental Biology, 224: 1–10. https://doi.org/10.1242/jeb.242800

2020

Bessho-Uehara, M., W. Huang, W.L. Patry, W. E. Browne, J.K. Weng, and S.H.D. Haddock. 2020. Evidence for de novo biosynthesis of the luminous substrate coelenterazine in ctenophores. iScience, 23: 1–11. https://doi.org/10.1016/j.isci.2020.101859

Bessho-Uehara, M., W. R. Francis, and S. Haddock. 2020. Biochemical characterization of diverse deep-sea anthozoan bioluminescence systems. Marine Biology, 167: 1–19. https://doi.org/10.1007/s00227-020-03706-w

Drazen, J.C., C.R. Smith, K.M. Gjerde, S.H.D. Haddock, G.S. Carter, C.A. Choy, M.R. Clark, P. Dutrieux, E. Goetze, C. Hauton, M. Hatta, J.A. Koslow, A.B. Leitner, A. Pacini, J.N. Perelman, T. Peacock, T.T. Sutton, L. Watling, and H. Yamamoto. 2020. Midwater ecosystems must be considered when evaluating environmental risks of deep-sea mining. Proceedings of the National Academy of Sciences, 117(30): 17455–17460. https://doi.org/10.1073/pnas.2011914117

Leonardi, N.D., E.V. Thuesen, and S.H.D. Haddock. 2020. A sticky thicket of glue cells: A comparative morphometric analysis of colloblasts in 20 species of comb jelly (phylum Ctenophora). Ciencias Marinas, 46: 211–225. https://doi.org/10.7773/cm.v46i4.3118

Martini, S, D.T. Schultz, L. Lundsten, and S.H.D. Haddock. 2020. Bioluminescence in an undescribed species of carnivorous sponge (Cladorhizidae) from the deep sea. Science, 7: 1–19. https://doi.org/10.3389/fmars.2020.576476

Schultz, D.T., J.M. Eizenga, R.B. Corbett-Detig, W.R. Francis, L.M. Christianson, and S.H.D. Haddock. 2020. Conserved novel ORFs in the mitochondrial genome of the ctenophore Beroe forskalii. PeerJ, 8: e8356. https://doi.org/10.7717/peerj.8356

2019

Martini, S., L. Kuhnz, J. Mallefet, and S.H.D. Haddock. 2019. Distribution and quantification of bioluminescence as an ecological trait in the deep sea benthos. Scientific Reports, 9(14654). https://doi.org/10.1038/s41598-019-50961-z

Messié, M., I. Shulman, S. Martini, and S. Haddock. 2019. Using fluorescence and bioluminescence sensors to characterize auto- and heterotrophic plankton communities. Progress in Oceanography, 171: 76–92. https://doi.org/10.1016/j.pocean.2018.12.010

Winnikoff, J.R., W.R. Francis, E.V. Thuesen, and S.H.D. Haddock. 2019. Combing transcriptomes for secrets of deep-sea survival: Environmental diversity drives patterns of protein evolution. Integrative and Comparative Biology, 59(4): 786–798. https://doi.org/10.1093/icb/icz063. PDF.

2018

Babonis, L., M.B. Debiasse, W.R. Francis, L.M. Christianson, S.H.D. Haddock, M.Q. Martindale, and J.F. Ryan. 2018. Integrating embryonic development and evolutionary history to characterize tentacle-specific cell types in a ctenophore. Molecular Biology and Evolution, 35: 2940–2956. https://doi.org/10.1093/molbev/msy171

Drazen, J.C., C.R. Smith, K. Gjerde, W. Au, J. Black, G. Carter, M. Clark, J.M. Durden, P. Dutrieux, E. Goetze, S. Haddock, M. Hatta, C. Hauton, P. Hill , J. Koslow, A.B. Leitner, C. Measures, A. Pacini, F. Parrish, T. Peacock, J. Perelman, T. Sutton, C. Taymans, V. Tunnicliffe, L. Watling, H. Yamamoto, E. Young, and A.F. Ziegler. 2018. Report of the workshop evaluating the nature of midwater mining plumes and their potential effects on midwater ecosystems. Research  Ideas and Outcomes, 5: e33527. https://doi.org/10.3897/rio.5.e33527

Munro, C., S. Siebert, F. Zapata, M. Howison, A. Damian-Serrano, S.H. Church, F.E. Goetz, P.R. Pugh, S.H.D. Haddock, and C.W. Dunn. 2018. Improved phylogenetic resolution within Siphonophora (Cnidaria) with implications for trait evolution. Molecular Phylogenetics and Evolution, 127: 823–833. https://doi.org/10.1016/j.ympev.2018.06.030

Pugh, P.R., C.W. Dunn, and S.H.D. Haddock. 2018. A description of Tottonophyes enigmatica gen. nov., sp. nov. in a new family of calycophoran siphonophores (Hydrozoa), with notes on calycophoran canals. Zootaxa, 4415: 452–472. http://dx.doi.org/10.11646/zootaxa.4415.3.3. PDF.

Schultz, D.T., A.A. Kotlobay, R. Ziganshin, A. Bannikov, N.M. Markina, T.V. Chepurnyh, E.S. Shakhova, K. Palkina, S.H.D. Haddock, I.V. Yampolsky, and Y. Oba. 2018. Luciferase of the Japanese syllid polychaete Odontosyllis umdecimdonta. Biochemical and Biophysical Research Communications, 502: 318–323. https://doi.org/10.1016/j.bbrc.2018.05.135

2017

Choy, C.A., S.H.D. Haddock, and B.H. Robison. 2017. Deep pelagic food web structure as revealed by in situ feeding observations. Proc Biol Sci, 284: 1–10. http://doi.org/10.1098/rspb.2017.2116

Francis, W.R., L.M. Christianson, and S.H.D. Haddock. 2017. Symplectin evolved from multiple duplications in bioluminescent squid. PeerJ, 5: e3633. http://dx.doi.org/10.7717/peerj.3633

Haddock, S.H.D., L.M. Christianson, W.R. Francis, S. Martini, C.W. Dunn, P.R. Pugh, C.E. Mills, K.J. Osborn, B.A. Seibel, C.A. Choy, C.E. Schnitzler, G.I. Matsumoto, M. Messié, D.T. Schultz, J.R. Winnikoff, M.L. Powers, R. Gasca, W.E. Browne, S. Johnsen, K.L. Schlining, S. von Thun, B.E. Erwin, J.F. Ryan, and E.V. Thuesen. 2017. Insights into the biodiversity, behavior, and bioluminescence of deep-sea organisms using molecular and maritime technology. Oceanography, 30: 38–47. https://doi.org/10.5670/oceanog.2017.422. PDF.

Hoving, H.J., and S.H. Haddock. 2017. The giant deep-sea octopus Haliphron atlanticus forages on gelatinous fauna. Scientific Reports, 7: 1–4. http://dx.doi.org/10.1038/srep44952

Hoving, H.J.T., S.L. Bush, S.H.D. Haddock, and B.H. Robison. 2017. Bathyal feasting: post-spawning squid as a source of carbon for deep-sea benthic communities. Proceedings of the Royal Society B, 284: 1–5. http://doi.org/10.1098/rspb.2017.2096

Martini, S., and S.H.D. Haddock. 2017. Quantification of bioluminescence from the surface to the deep sea demonstrates its predominance as an ecological trait. Scientific Reports, 7: 1–11. http://dx.doi.org/10.1038/srep45750

Winnikoff, J.R., T.M. Wilson, E.V. Thuesen, and S.H.D. Haddock. 2017. Enzymes feel the squeeze: biochemical adaptation to pressure in the deep sea. The Biochemist, 39: 26–29. https://doi.org/10.1042/BIO03906026. PDF.

2016

Fossette, S., K. Katija, J.A. Goldbogen, S. Bograd, W. Patry, M.J. Howard, T. Knowles, S.H.D. Haddock, L. Bedell, E.L. Hazen, B.H. Robison, T.A. Mooney, K.A. Shorter, T. Bastian, and A.C. Gleiss. 2016. How to tag a jellyfish? A methodological review and guidelines to successful jellyfish tagging. Journal of Plankton Research, 38: 1347–1363. http://dx.doi.org/10.1093/plankt/fbw073

Francis, W.R., L.M. Christianson, M.L. Powers, C.E. Schnitzler, and S.H.D. Haddock. 2016. Non-excitable fluorescent protein orthologs found in ctenophores. BMC Evolutionary Biology, 16: 167. http://dx.doi.org/10.1186/s12862-016-0738-5

Gasca, R., and S.H. Haddock. 2016. The rare deep-living hyperiid amphipod Megalanceoloides remipes (Barnard, 1932): Complementary description and symbiosis. Zootaxa, 4178: 138–144. http://dx.doi.org/10.11646/zootaxa.4178.1.7

Pugh, P.R., and S.H.D. Haddock. 2016. A description of two new species of the genus Erenna (Siphonophora, Physonectae, Erennidae), with notes on recently collected specimens of other Erenna species. Zootaxa, 4189: 401–446. http://dx.doi.org/10.11646/zootaxa.4189.3.1

2015

Francis, W.R., N.C. Shaner, L.M. Christianson, M.L. Powers, and S.H.D. Haddock. 2015. Occurrence of isopenicillin-N-synthase homologs in bioluminescent ctenophores and implications for coelenterazine biosynthesis. PLoS One, 10: e0128742. http://dx.doi.org/10.1371/journal.pone.0128742. PDF.

Gasca, R., E. Suárez-Morales, and S.H.D. Haddock. 2015. Sapphirina iris Dana, 1849 and S. sinuicauda Brady, 1883 (Copepoda, Cyclopoida): Predators of salps in Monterey Bay and the Gulf of California. Crustaceana, 88: 689–699. http://dx.doi.org/10.1163/15685403-00003438

Haddock, S.H.D., and C.W. Dunn. 2015. Fluorescent proteins function as a prey attractant: Experimental evidence from the hydromedusa Olindias formosus and other marine organisms. Biology Open, 4(9): 1094–1104. http://dx.doi.org/10.1242/bio.012138. Supplemental video.

Siebert, S., F.E. Goetz, S.H. Church, P. Bhattacharyya, F. Zapata, S.H.D. Haddock, and C.W. Dunn. 2015. Stem cells in Nanomia bijuga (Siphonophora), a colonial animal with localized growth zones. Evodevo, 6: 22. http://dx.doi.org/10.1186/s13227-015-0018-2

Zapata, F., F.E. Goetz, S.A. Smith, M. Howison, S. Siebert, S.H. Church, S.M. Sanders, C.L. Ames, C.S. McFadden, S.C. France, M. Daly, A.G. Collins, S.H.D. Haddock, C.W. Dunn, and P. Cartwright. 2015. Phylogenomic analyses support traditional relationships within Cnidaria. PLoS One, 10: e0139068. http://dx.doi.org/10.1371/journal.pone.0139068

2014

Bracken-Grissom, H., A.G. Collins, T. Collins, K. Crandall, D. Distel, C.W. Dunn, G. Giribet, S.H.D. Haddock, N. Knowlton, M.Q. Martindale, M. Medina, C.G. Messing, S. O'Brien, G. Paulay, N. Putnam, T. Ravasi, G. Rouse, J. Ryan, A. Schulze, G. Wörheide, M. Adamska, X. Bailly, J. Breinholt, W.E. Browne, C. Diaz, N. Evans, J.F. Flot, N. Fogarty, M. Johnston, B. Kamel, A.Y. Kawahara, T. Laberge, D. Lavrov, F. Michonneau, L.L. Moroz, T. Oakley, K.J. Osborne, S. Pomponi, A. Rhodes, M. Rodriguez-Lanetty, S.R. Santos, N. Satoh, R.W. Thacker, Y. Van de Peer, C.R. Voolstra, D.M. Welch, J. Winston, and X. Zhou. 2014. The Global Invertebrate Genomics Alliance (GIGA): Developing community resources to study diverse invertebrate genomes. Journal of Heredity, 105: 1–18. https://doi.org/10.1093/jhered/est084. PDF.

Cazenave, F., C. Kecy, M. Risi, and S.H.D. Haddock. 2014. SeeStar: A low-cost, modular and open-source camera system for subsea observations. In Proceedings of Marine Technology Society/Institute for Electrical and Electronics Engineers Oceans 2014, St. John's, NL, Canada, 14–19 September 2014. https://doi.org/10.1109/OCEANS.2014.7003077

Francis, W.R., M.L. Powers, and S.H.D. Haddock. 2014. Characterization of an anthraquinone fluor from the bioluminescent, pelagic polychaete Tomopteris. Luminescence, 29: 1135–1140. http://dx.doi.org/10.1002/bio.2671. PDF.

Gasca, R., R. Hoover, and S.H.D. Haddock. 2014. New symbiotic associations of hyperiid amphipods (Peracarida) with gelatinous zooplankton in deep waters off California. Journal of the Marine Biological Association of the United Kingdom, 95: 503–511. http://dx.doi.org/10.1017/S0025315414001416

Wilson, G., D.A. Aruliah, C.T. Brown, N.P.C. Hong, M. Davis, R.T. Guy., S.H.D. Haddock, K.D. Huff, I.M. Mitchell, M.D. Plumbley, B. Waugh, E.P. White, and P. Wilson. 2014. Best practices for scientific computing. PLoS Biology, 12: e1001745. http://dx.doi.org/10.1371/journal.pbio.1001745

2013

Francis, W.R., L.M. Christianson, R. Kiko, M.L. Powers, N.C. Shaner, and S.H.D. Haddock. 2013. A comparison across non-model animals suggests an optimal sequencing depth for de novo transcriptome assembly. BMC Genomics, 14: 167. http://dx.doi.org/10.1186/1471-2164-14-167

Hurt, C., S.H.D. Haddock, and W.E. Browne. 2013. Molecular phylogenetic evidence for the reorganization of the Hyperiid amphipods, a diverse group of pelagic crustaceans. Molecular Phylogenetics and Evolution, 67: 28–37. http://dx.doi.org/10.1016/j.ympev.2012.12.021

Madin, L.P., W.M. Hamner, S.H.D. Haddock, and G.I. Matsumoto. Scuba diving in blue water: A window on ecology and evolution in the epipelagic ocean. In Research and Discovery: The Revolution of Science through Scuba, edited by Lang, M.A., R.L. Marinelli, S.J. Roberts, and P.R. Taylor, 71–82. Washington, D.C., Smithsonian Institution Scholarly Press: 2013.

Ryan, J.F., K. Pang, C.E. Schnitzler, A.D. Nguyen, R.T. Moreland, D.K. Simmons, B.J. Koch, W.R. Francis, P. Havlak, NISC Comparative Sequencing Program, S.A. Smith, N.H. Putnam, S.H.D. Haddock, C.W. Dunn, T.G. Wolfsberg, J.C. Mullikin, M.Q. Martindale, and A.D. Baxevanis. 2013. The genome of the ctenophore Mnemiopsis leidyi and its implications for cell type evolution. Science, 342: 1336–1344. http://dx.doi.org/10.1126/science.1242592

Siebert, S., P.R. Pugh, S.H.D. Haddock, and C.W. Dunn. 2013. Re-evaluation of characters in Apolemiidae (Siphonophora), with description of two new species from Monterey Bay, California. Zootaxa, 3702: 201–232. http://dx.doi.org/10.11646/zootaxa.3702.3

Thuesen, E.V., and S.H.D. Haddock. 2013. Archeterokrohnia docrickettsae (Chaetognatha: Phragmophora: Heterokrohniidae), a new species of deep-sea arrow worm from the Gulf of California. Zootaxa, 3717: 320–328. http://dx.doi.org/10.11646/zootaxa.3717.3.2

2012

Condon, R.H., C.M. Duarte, K.A. Pitt, K.L. Robinson, C.H. Lucas, K.R. Sutherland, H.W. Mianzan, M. Bogeberg, J.E. Purcell, M.B. Decker, S.I. Uye, L.P. Madin, R.D. Brodeur, S.H.D. Haddock, A. Malej, G.D. Parry, E. Eriksen, J. Quiñones, M. Acha, M. Harvey, J.M. Arthur, and W.M. Graham. 2012. Recurrent jellyfish blooms are a consequence of global oscillations. Proceedings of the National Academy of Sciences of the United States of America, 110: 1000–1005. http://dx.doi.org/10.1073/pnas.1210920110

Condon, R.H., W.M. Graham, C.M. Duarte, K.A. Pitt, C.H. Lucas, S.H.D. Haddock, K.R. Sutherland, K.L. Robinson, M.N. Dawson, M.B. Decker, C.E. Mills, J.E. Purcell, A. Malej, H. Mianzan, S.I. Uye, S. Gelcich, and L.P. Madin. 2012. Questioning the rise of gelatinous zooplankton in the world's oceans. BioScience, 62: 160–169. http://dx.doi.org/10.1525/bio.2012.62.2.9

Johnsen, S., T.M. Frank, S.H.D. Haddock, E.A. Widder, and C.G. Messing. 2012. Light and vision in the deep-sea benthos: I. Bioluminescence at 500–1000 m depth in the Bahamian Islands. Journal of Experimental Biology, 215: 3335–3343. http://doi.org/10.1242/jeb.072009

Powers, M.L., A.G. McDermott, N. Shaner, and S.H.D. Haddock. 2012. Expression and characterization of the calcium-activated photoprotein from the ctenophore Bathocyroe fosteri: Insights into light-sensitive photoproteins. Biochemical and Biophysical Research Communications, 431(2): 360–366. http://dx.doi.org/10.1016/j.bbrc.2012.12.026

Schnitzler, C.E., K. Pang, M.L. Powers, A.M. Reitzel, J.F. Ryan, D. Simmons, T. Tada, M. Park, J. Gupta, S.Y. Brooks, R.W. Blakesley, S. Yokoyama, S.H.D. Haddock, M.Q. Martindale, and A.D. Baxevanis. 2012. Genomic organization, evolution, and expression of photoprotein and opsin genes in Mnemiopsis leidyi: a new view of ctenophore photocytes. BMC Biology, 10: 1–26. http://dx.doi.org/10.1186/1741-7007-10-107

Shulman, I., B. Penta, M.A. Moline, S.H.D. Haddock, S. Anderson, M.J. Oliver, and P. Sakalaukus. 2012. Can vertical migrations of dinoflagellates explain observed bioluminescence patterns during an upwelling event in Monterey Bay, California?. Journal of Geophysical Research, 117: C01016. http://dx.doi.org/10.1029/2011JC007480

2011

Haddock, S.H.D., and C.W. Dunn. Practical computing for biologists. Sunderland, Massachusetts: Sinauer Associates, 2011.

Shulman, I., M.A. Moline, B. Penta, S. Anderson, M. Oliver, and S.H.D. Haddock. 2011. Observed and modeled bio-optical, bioluminescent, and physical properties during a coastal upwelling event in Monterey Bay, California. Journal of Geophysical Research-Oceans, 116: 1–13. http://dx.doi.org/10.1029/2010JC006525

Siebert, S., M.D. Robinson, S.C. Tintori, F.E. Goetz, R.R. Helm, S.A. Smith, N. Shaner, S.H.D. Haddock, and C.W. Dunn. 2011. Differential gene expression in the Siphonophore Nanomia bijuga (Cnidaria) assessed with multiple next generation sequencing workflows. PLoS ONE, 6: 1–12. http://dx.doi.org/10.1371/journal.pone.0022953

2010

Bayha, K.M., M.N. Dawson, A.G. Collins, M.S. Barbeitos, and S.H.D. Haddock. 2010. Evolutionary relationships among scyphozoan jellyfish families based on complete taxon sampling and phylogenetic analyses of 18S and 28S ribosomal DNA. Integrative and Comparative Biology, 50: 436–455. http://dx.doi.org/10.1093/icb/icq074

Haddock, S.H.D. 2010. A plea for meaningful colors in ODV. Limnology and Oceanography Bulletin, 19: 44–45.

Haddock, S.H.D., N. Mastroianni, and L.M. Christianson. 2010. A photoactivatable green-fluorescent protein from the phylum Ctenophora. Proceedings of the Royal Society B, 277: 1155–1160. http://dx.doi.org/10.1098/rspb.2009.1774

Pugh, P.R., and S.H.D. Haddock. 2010. Three new species of resomiid siphonophores (Siphonophora, Physonectae). Journal of the Marine Biological Association of the United Kingdom, 90: 1119–1143.

Thuesen, E.V., F.E. Goetz, and S.H.D. Haddock. 2010. Bioluminescent organs of two deep-sea arrow worms, Eukrohnia fowleri and Caecosagitta macrocephala, with further observations on bioluminescence in chaetognaths. Biological Bulletin, 219: 100–111. https://doi.org/10.1086/BBLv219n2p100

2009

Gorokhova, E., M. Lehtiniemi, S. Viitasalo-Frösen, and S.H.D. Haddock. 2009. Molecular evidence for the occurrence of ctenophore Mertensia ovum in the northern Baltic Sea and implications for current distribution of the invasive species Mnemiopsis leidyi. Limnology and Oceanography, 54: 2025–2033.

Moline, M.A., S.M. Blackwell, J.F. Case, S.H.D. Haddock, C.M. Herren, C.M. Orrico, and E. Terrill. 2009. Bioluminescence to reveal structure and interaction of coastal planktonic communities. Deep-Sea Research Part II, 56: 232–245. http://dx.doi.org/10.1016/j.dsr2.2008.08.002

2008

Collins, A.G., B. Bentlage, A. Lindner, D. Lindsay, S.H.D. Haddock, G. Jarms, J.L. Norenburg, T. Jankowski, and P. Cartwright. 2008. Phylogenetics of Trachylina (Cnidaria: Hydrozoa) with new insights on the evolution of some problematical taxa. Journal of the Marine Biological Association of the United Kingdom, 88: 1673–1685. http://dx.doi.org/10.1017/S0025315408001732

Dunn, C.W., A. Hejnol, D.Q. Matus, K. Pang, W.E. Browne, S.A. Smith, E. Seaver, G.W. Rouse, M. Obst, G.D. Edgecombe, M.V. Sorensen, S.H.D. Haddock, A. Schmidt-Rhaesa, A. Okusu, R.M. Kristensen, W.C. Wheeler, M.Q. Martindale, and G. Giribet. 2008. Broad phylogenomic sampling improves resolution of the animal tree of life. Nature, 452: 745–749. http://dx.doi.org/10.1038/nature06614

Haddock, S. H. D. 2008. Reconsidering evidence for potential climate-related increases in jellyfish. Limnology and Oceanography, 53: 2759–2762.

Schnitzler, C.E., R.J. Keenan, R. McCord, A. Matysik, L.M. Christianson, and S.H.D. Haddock. 2008. Spectral diversity of fluorescent proteins from the anthozoan Corynactis californica. Marine Biotechnology, 10: 328–342. http://dx.doi.org/10.1007/s10126-007-9072-7

Staaf, D.J., S. Camarillo-Coop, S.H.D. Haddock, A.C. Nyack, J. Payne, R. Ramirez-Rojo, C.A. Salinas-Zavala, B.A. Seibel, L. Trueblood, C. Widmer, and W.F. Gilly. 2008. Natural egg mass deposition by the Humboldt squid (Dosidicus gigas) in the Gulf of California and characteristics of hatchlings and paralarvae . Journal of the Marine Biological Association of the United Kingdom, 88: 759–770. http://dx.doi.org/10.1017/S0025315408001422

2007

Browne, W.E., S.H.D. Haddock, and M.Q.Martindale. 2007. Phylogenetic analysis of lineage relationships among hyperiid amphipods as revealed by examination of the mitochondrial gene, cytochrome oxidase I (COI). Integrative and Comparative Biology, 47: 815–830. http://dx.doi.org/10.1093/icb/icm093