Robison, B.H. and S.H.D. Haddock. 2024. Discovery and description of a remarkable bathypelagic nudibranch, Bathydevius caudactylus, gen. et. sp. nov. Deep Sea Research Part I: Oceanographic Research Papers, 214: 104414. https://doi.org/10.1016/j.dsr.2024.104414
Winnikoff, J. R., D. Milshteyn, S. J. Vargas-Urbano, M. A. Pedraza-Joya, A. M. Armando, O. Quehenberger, A. Sodt, R. E Gillilan, E. A. Dennis, E. Lyman, S. H. D. Haddock, and I. Budin. 2024. Homeocurvature adaptation of phospholipids to pressure in deep-sea invertebrates. Science, 384(6703). https://doi.org/adm7607
Damian-Serrano, A., E.D. Hetherington, C.A. Choy, S.H.D. Haddock, A. Lapides, and C.W. Dunn. 2022. Characterizing the secret diets of siphonophores (Cnidaria: Hydrozoa) using DNA metabarcoding. PLOS ONE, 17(e0267761): 1–24. https://doi.org/10.1371/journal.pone.0267761
Hetherington, E.D., A. Damian-Serrano, S.H.D. Haddock, C.W. Dunn, and C.A. Choy. 2022. Integrating siphonophores into marine food-web ecology. Limnology and Oceanography Letters, 7: 81–95. https://doi.org/10.1002/lol2.10235
Hetherington, E.D., C.A. Choy, E.V. Thuesen, and S.H.D. Haddock. 2022. Three distinct views of deep pelagic community composition based on complementary sampling approaches. Frontiers in Marine Science, 9(864004): 1–10. http://doi.org/10.3389/fmars.2022.864004
Johnson, S.B., J.R. Winnikoff, D.T. Schultz, L.M. Christianson, W.L. Patry, C.E. Mills, and S.H.D. Haddock. 2022. Speciation of pelagic zooplankton: Invisible boundaries can drive isolation of oceanic ctenophores. Frontiers in Genetics, 13(970314): 1–17. https://doi.org/10.3389/fgene.2022.970314
Matsumoto, G.I., L.M. Christianson, B.H. Robison, S.H.D. Haddock, and S.B. Johnson. 2022. Atolla reynoldsi sp. nov. (Cnidaria, Scyphozoa, Coronatae, Atollidae): A new species of coronate Scyphozoan found in the Eastern North Pacific Ocean. Animals, 12: 1–21. https://doi.org/10.3390/ani12060742
Christianson, L.M., S.B. Johnson, D.T. Schultz, and S.H.D. Haddock. 2021. Hidden diversity of Ctenophora revealed by new mitochondrial COI primers and sequences. Molecular Ecology Resources, 22: 283–294. https://doi.org/10.1111/1755-0998.13459
Damian-Serrano, A., S.H.D. Haddock, and C.W. Dunn. 2021. The evolution of siphonophore tentilla for specialized prey capture in the open ocean. Proceedings of the National Academy of Sciences, 118: 1–9. https://doi.org/10.1073/pnas.2005063118
Elor, A., T. Thang, B.P. Hughes, A. Crosby, A. Phung, E. Gonzalez, K. Katija, S.H.D. Haddock, B.E. Erwin, E.J. Martin, and L. Takayama. 2021. Catching jellies in immersive virtual reality: A comparative teleoperation study of ROVs in underwater capture tasks. Proceedings of the 27th ACM Symposium on Virtual Reality Software and Technology, VRST '21 (17): 1–10. https://doi.org/10.1145/3489849.3489861
Gibbons, M.J., S.H.D. Haddock, G.I. Matsumoto, and C. Foster. 2021. Records of ctenophores from South Africa. PeerJ, 9: 1–27. https://doi.org/10.7717/peerj.10697
Helm, R.R., N. Clark, H. Harden-Davies, D. Amon, P. Girguis, C. Bordehore, S. Earle, M.J. Gibbons, Y. Golbuu, S.H.D. Haddock, J.D.R. Houghton, J. Javidpour, D.J. McCauley, L. Morgan, D. Obura, E.A. Pakhomov, K.A. Pitt, J. Jimenez Ramon, R. Sumaila, and J.B. Thiebot. 2021. Protect high seas biodiversity. Science, 372: 1048–1049. https://doi.org/10.1126/science.abj0581
Meech, M.E., C.E. Mills, S.H.D. Haddock, and R.W. Meech. 2021. Two swimming modes in Trachymedusae; bell kinematics and the role of giant axons. Journal of Experimental Biology, 224: 1–12. https://doi.org/10.1242/jeb.239830
Miller, S.D., S.H.D. Haddock, W.C. Straka III, C.J. Seaman, C.L. Combs, M. Wang, W. Shi, and S. Nam. 2021. Honing in on bioluminescent milky seas from space. Scientific Reports, 11: 1–10. https://doi.org/10.1038/s41598-021-94823-z
Puente-Tapia, F.A., R. Gasca, A. Schiariti, and S.H.D. Haddock. 2021. An updated checklist of ctenophores (Ctenophora: Nuda and Tentaculata) of Mexican seas. Regional Studies in Marine Science, 41: 1–20. https://doi.org/10.1016/j.rsma.2020.101555
Schultz, D.T., W.R. Francis, J.D. McBroome, L.M. Christianson, S.H.D. Haddock, and R.E. Green. 2021. A chromosome-scale genome assembly and karyotype of the ctenophore Hormiphora californensis. G3 Genes|Genomes|Genetics, 11(11): 1–12. https://doi.org/10.1093/g3journal/jkab302
Damian-Serrano, A., S.H.D. Haddock, and C.W. Dunn. 2021. The evolutionary history of siphonophore tentilla: Novelties, convergence, and integration. Integrative Organismal Biology, 3: 1–21. https://doi.org/10.1093/iob/obab019
Stefanoudis, P. V., L.M. Biancani, S. Cambronero-Solano, M.R. Clark, J.T. Copley, E. Easton, F. Elmer, S.H.D. Haddock, S. Herrera, I.S. Iglesias, A.M. Quattrini, J. Sigwart, C. Yesson, and A.G. Glover. 2021. Moving conferences online: lessons learned from an international virtual meeting. Proceedings of the Royal Society B, 288: 1–7. https://doi.org/10.1098/rspb.2021.1769
Winnikoff, J.R., S.H.D. Haddock, and I. Budin. 2021. Depth- and temperature-specific fatty acid adaptations in ctenophores from extreme habitats. Journal of Experimental Biology, 224: 1–10. https://doi.org/10.1242/jeb.242800
Bessho-Uehara, M., W. Huang, W.L. Patry, W. E. Browne, J.K. Weng, and S.H.D. Haddock. 2020. Evidence for de novo biosynthesis of the luminous substrate coelenterazine in ctenophores. iScience, 23: 1–11. https://doi.org/10.1016/j.isci.2020.101859
Bessho-Uehara, M., W. R. Francis, and S. Haddock. 2020. Biochemical characterization of diverse deep-sea anthozoan bioluminescence systems. Marine Biology, 167: 1–19. https://doi.org/10.1007/s00227-020-03706-w
Drazen, J.C., C.R. Smith, K.M. Gjerde, S.H.D. Haddock, G.S. Carter, C.A. Choy, M.R. Clark, P. Dutrieux, E. Goetze, C. Hauton, M. Hatta, J.A. Koslow, A.B. Leitner, A. Pacini, J.N. Perelman, T. Peacock, T.T. Sutton, L. Watling, and H. Yamamoto. 2020. Midwater ecosystems must be considered when evaluating environmental risks of deep-sea mining. Proceedings of the National Academy of Sciences, 117(30): 17455–17460. https://doi.org/10.1073/pnas.2011914117
Leonardi, N.D., E.V. Thuesen, and S.H.D. Haddock. 2020. A sticky thicket of glue cells: A comparative morphometric analysis of colloblasts in 20 species of comb jelly (phylum Ctenophora). Ciencias Marinas, 46: 211–225. https://doi.org/10.7773/cm.v46i4.3118
Martini, S, D.T. Schultz, L. Lundsten, and S.H.D. Haddock. 2020. Bioluminescence in an undescribed species of carnivorous sponge (Cladorhizidae) from the deep sea. Science, 7: 1–19. https://doi.org/10.3389/fmars.2020.576476
Schultz, D.T., J.M. Eizenga, R.B. Corbett-Detig, W.R. Francis, L.M. Christianson, and S.H.D. Haddock. 2020. Conserved novel ORFs in the mitochondrial genome of the ctenophore Beroe forskalii. PeerJ, 8: e8356. https://doi.org/10.7717/peerj.8356
Martini, S., L. Kuhnz, J. Mallefet, and S.H.D. Haddock. 2019. Distribution and quantification of bioluminescence as an ecological trait in the deep sea benthos. Scientific Reports, 9(14654). https://doi.org/10.1038/s41598-019-50961-z
Messié, M., I. Shulman, S. Martini, and S. Haddock. 2019. Using fluorescence and bioluminescence sensors to characterize auto- and heterotrophic plankton communities. Progress in Oceanography, 171: 76–92. https://doi.org/10.1016/j.pocean.2018.12.010
Winnikoff, J.R., W.R. Francis, E.V. Thuesen, and S.H.D. Haddock. 2019. Combing transcriptomes for secrets of deep-sea survival: Environmental diversity drives patterns of protein evolution. Integrative and Comparative Biology, 59(4): 786–798. https://doi.org/10.1093/icb/icz063. PDF.
Babonis, L., M.B. Debiasse, W.R. Francis, L.M. Christianson, S.H.D. Haddock, M.Q. Martindale, and J.F. Ryan. 2018. Integrating embryonic development and evolutionary history to characterize tentacle-specific cell types in a ctenophore. Molecular Biology and Evolution, 35: 2940–2956. https://doi.org/10.1093/molbev/msy171
Munro, C., S. Siebert, F. Zapata, M. Howison, A. Damian-Serrano, S.H. Church, F.E. Goetz, P.R. Pugh, S.H.D. Haddock, and C.W. Dunn. 2018. Improved phylogenetic resolution within Siphonophora (Cnidaria) with implications for trait evolution. Molecular Phylogenetics and Evolution, 127: 823–833. https://doi.org/10.1016/j.ympev.2018.06.030
Pugh, P.R., C.W. Dunn, and S.H.D. Haddock. 2018. A description of Tottonophyes enigmatica gen. nov., sp. nov. in a new family of calycophoran siphonophores (Hydrozoa), with notes on calycophoran canals. Zootaxa, 4415: 452–472. http://dx.doi.org/10.11646/zootaxa.4415.3.3. PDF.
Schultz, D.T., A.A. Kotlobay, R. Ziganshin, A. Bannikov, N.M. Markina, T.V. Chepurnyh, E.S. Shakhova, K. Palkina, S.H.D. Haddock, I.V. Yampolsky, and Y. Oba. 2018. Luciferase of the Japanese syllid polychaete Odontosyllis umdecimdonta. Biochemical and Biophysical Research Communications, 502: 318–323. https://doi.org/10.1016/j.bbrc.2018.05.135
Choy, C.A., S.H.D. Haddock, and B.H. Robison. 2017. Deep pelagic food web structure as revealed by in situ feeding observations. Proc Biol Sci, 284: 1–10. http://doi.org/10.1098/rspb.2017.2116
Francis, W.R., L.M. Christianson, and S.H.D. Haddock. 2017. Symplectin evolved from multiple duplications in bioluminescent squid. PeerJ, 5: e3633. http://dx.doi.org/10.7717/peerj.3633
Haddock, S.H.D., L.M. Christianson, W.R. Francis, S. Martini, C.W. Dunn, P.R. Pugh, C.E. Mills, K.J. Osborn, B.A. Seibel, C.A. Choy, C.E. Schnitzler, G.I. Matsumoto, M. Messié, D.T. Schultz, J.R. Winnikoff, M.L. Powers, R. Gasca, W.E. Browne, S. Johnsen, K.L. Schlining, S. von Thun, B.E. Erwin, J.F. Ryan, and E.V. Thuesen. 2017. Insights into the biodiversity, behavior, and bioluminescence of deep-sea organisms using molecular and maritime technology. Oceanography, 30: 38–47. https://doi.org/10.5670/oceanog.2017.422. PDF.
Hoving, H.J., and S.H. Haddock. 2017. The giant deep-sea octopus Haliphron atlanticus forages on gelatinous fauna. Scientific Reports, 7: 1–4. http://dx.doi.org/10.1038/srep44952
Hoving, H.J.T., S.L. Bush, S.H.D. Haddock, and B.H. Robison. 2017. Bathyal feasting: post-spawning squid as a source of carbon for deep-sea benthic communities. Proceedings of the Royal Society B, 284: 1–5. http://doi.org/10.1098/rspb.2017.2096
Martini, S., and S.H.D. Haddock. 2017. Quantification of bioluminescence from the surface to the deep sea demonstrates its predominance as an ecological trait. Scientific Reports, 7: 1–11. http://dx.doi.org/10.1038/srep45750
Winnikoff, J.R., T.M. Wilson, E.V. Thuesen, and S.H.D. Haddock. 2017. Enzymes feel the squeeze: biochemical adaptation to pressure in the deep sea. The Biochemist, 39: 26–29. https://doi.org/10.1042/BIO03906026. PDF.
Fossette, S., K. Katija, J.A. Goldbogen, S. Bograd, W. Patry, M.J. Howard, T. Knowles, S.H.D. Haddock, L. Bedell, E.L. Hazen, B.H. Robison, T.A. Mooney, K.A. Shorter, T. Bastian, and A.C. Gleiss. 2016. How to tag a jellyfish? A methodological review and guidelines to successful jellyfish tagging. Journal of Plankton Research, 38: 1347–1363. http://dx.doi.org/10.1093/plankt/fbw073
Francis, W.R., L.M. Christianson, M.L. Powers, C.E. Schnitzler, and S.H.D. Haddock. 2016. Non-excitable fluorescent protein orthologs found in ctenophores. BMC Evolutionary Biology, 16: 167. http://dx.doi.org/10.1186/s12862-016-0738-5
Francis, W.R., M.L. Powers, and S.H.D. Haddock. 2016. Bioluminescence spectra from three deep-sea polychaete worms. Marine Biology, 163: 2–12. http://dx.doi.org/10.1007/s00227-016-3028-2
Gasca, R., and S.H. Haddock. 2016. The rare deep-living hyperiid amphipod Megalanceoloides remipes (Barnard, 1932): Complementary description and symbiosis. Zootaxa, 4178: 138–144. http://dx.doi.org/10.11646/zootaxa.4178.1.7
Pugh, P.R., and S.H.D. Haddock. 2016. A description of two new species of the genus Erenna (Siphonophora, Physonectae, Erennidae), with notes on recently collected specimens of other Erenna species. Zootaxa, 4189: 401–446. http://dx.doi.org/10.11646/zootaxa.4189.3.1
Dunn, C.W., S.P. Leys, and S.H.D. Haddock. 2015. The hidden biology of sponges and ctenophores. Trends in Ecology & Evolution, 30: 282–291. http://dx.doi.org/10.1016/j.tree.2015.03.003. PDF. New Yorker Article.
Francis, W.R., N.C. Shaner, L.M. Christianson, M.L. Powers, and S.H.D. Haddock. 2015. Occurrence of isopenicillin-N-synthase homologs in bioluminescent ctenophores and implications for coelenterazine biosynthesis. PLoS One, 10: e0128742. http://dx.doi.org/10.1371/journal.pone.0128742. PDF.
Gasca, R., E. Suárez-Morales, and S.H.D. Haddock. 2015. Sapphirina iris Dana, 1849 and S. sinuicauda Brady, 1883 (Copepoda, Cyclopoida): Predators of salps in Monterey Bay and the Gulf of California. Crustaceana, 88: 689–699. http://dx.doi.org/10.1163/15685403-00003438
Haddock, S.H.D., and C.W. Dunn. 2015. Fluorescent proteins function as a prey attractant: Experimental evidence from the hydromedusa Olindias formosus and other marine organisms. Biology Open, 4(9): 1094–1104. http://dx.doi.org/10.1242/bio.012138. Supplemental video.
Zapata, F., F.E. Goetz, S.A. Smith, M. Howison, S. Siebert, S.H. Church, S.M. Sanders, C.L. Ames, C.S. McFadden, S.C. France, M. Daly, A.G. Collins, S.H.D. Haddock, C.W. Dunn, and P. Cartwright. 2015. Phylogenomic analyses support traditional relationships within Cnidaria. PLoS One, 10: e0139068. http://dx.doi.org/10.1371/journal.pone.0139068
Bracken-Grissom, H., A.G. Collins, T. Collins, K. Crandall, D. Distel, C.W. Dunn, G. Giribet, S.H.D. Haddock, N. Knowlton, M.Q. Martindale, M. Medina, C.G. Messing, S. O'Brien, G. Paulay, N. Putnam, T. Ravasi, G. Rouse, J. Ryan, A. Schulze, G. Wörheide, M. Adamska, X. Bailly, J. Breinholt, W.E. Browne, C. Diaz, N. Evans, J.F. Flot, N. Fogarty, M. Johnston, B. Kamel, A.Y. Kawahara, T. Laberge, D. Lavrov, F. Michonneau, L.L. Moroz, T. Oakley, K.J. Osborne, S. Pomponi, A. Rhodes, M. Rodriguez-Lanetty, S.R. Santos, N. Satoh, R.W. Thacker, Y. Van de Peer, C.R. Voolstra, D.M. Welch, J. Winston, and X. Zhou. 2014. The Global Invertebrate Genomics Alliance (GIGA): Developing community resources to study diverse invertebrate genomes. Journal of Heredity, 105: 1–18. https://doi.org/10.1093/jhered/est084. PDF.
Cazenave, F., C. Kecy, M. Risi, and S.H.D. Haddock. 2014. SeeStar: A low-cost, modular and open-source camera system for subsea observations. In Proceedings of Marine Technology Society/Institute for Electrical and Electronics Engineers Oceans 2014, St. John's, NL, Canada, 14–19 September 2014. https://doi.org/10.1109/OCEANS.2014.7003077
Francis, W.R., M.L. Powers, and S.H.D. Haddock. 2014. Characterization of an anthraquinone fluor from the bioluminescent, pelagic polychaete Tomopteris. Luminescence, 29: 1135–1140. http://dx.doi.org/10.1002/bio.2671. PDF.
Gasca, R., R. Hoover, and S.H.D. Haddock. 2014. New symbiotic associations of hyperiid amphipods (Peracarida) with gelatinous zooplankton in deep waters off California. Journal of the Marine Biological Association of the United Kingdom, 95: 503–511. http://dx.doi.org/10.1017/S0025315414001416
Wilson, G., D.A. Aruliah, C.T. Brown, N.P.C. Hong, M. Davis, R.T. Guy., S.H.D. Haddock, K.D. Huff, I.M. Mitchell, M.D. Plumbley, B. Waugh, E.P. White, and P. Wilson. 2014. Best practices for scientific computing. PLoS Biology, 12: e1001745. http://dx.doi.org/10.1371/journal.pbio.1001745
Francis, W.R., L.M. Christianson, R. Kiko, M.L. Powers, N.C. Shaner, and S.H.D. Haddock. 2013. A comparison across non-model animals suggests an optimal sequencing depth for de novo transcriptome assembly. BMC Genomics, 14: 167. http://dx.doi.org/10.1186/1471-2164-14-167
Hurt, C., S.H.D. Haddock, and W.E. Browne. 2013. Molecular phylogenetic evidence for the reorganization of the Hyperiid amphipods, a diverse group of pelagic crustaceans. Molecular Phylogenetics and Evolution, 67: 28–37. http://dx.doi.org/10.1016/j.ympev.2012.12.021
Madin, L.P., W.M. Hamner, S.H.D. Haddock, and G.I. Matsumoto. Scuba diving in blue water: A window on ecology and evolution in the epipelagic ocean. In Research and Discovery: The Revolution of Science through Scuba, edited by Lang, M.A., R.L. Marinelli, S.J. Roberts, and P.R. Taylor, 71–82. Washington, D.C., Smithsonian Institution Scholarly Press: 2013.
Ryan, J.F., K. Pang, C.E. Schnitzler, A.D. Nguyen, R.T. Moreland, D.K. Simmons, B.J. Koch, W.R. Francis, P. Havlak, NISC Comparative Sequencing Program, S.A. Smith, N.H. Putnam, S.H.D. Haddock, C.W. Dunn, T.G. Wolfsberg, J.C. Mullikin, M.Q. Martindale, and A.D. Baxevanis. 2013. The genome of the ctenophore Mnemiopsis leidyi and its implications for cell type evolution. Science, 342: 1336–1344. http://dx.doi.org/10.1126/science.1242592
Siebert, S., P.R. Pugh, S.H.D. Haddock, and C.W. Dunn. 2013. Re-evaluation of characters in Apolemiidae (Siphonophora), with description of two new species from Monterey Bay, California. Zootaxa, 3702: 201–232. http://dx.doi.org/10.11646/zootaxa.3702.3
Thuesen, E.V., and S.H.D. Haddock. 2013. Archeterokrohnia docrickettsae (Chaetognatha: Phragmophora: Heterokrohniidae), a new species of deep-sea arrow worm from the Gulf of California. Zootaxa, 3717: 320–328. http://dx.doi.org/10.11646/zootaxa.3717.3.2
Condon, R.H., C.M. Duarte, K.A. Pitt, K.L. Robinson, C.H. Lucas, K.R. Sutherland, H.W. Mianzan, M. Bogeberg, J.E. Purcell, M.B. Decker, S.I. Uye, L.P. Madin, R.D. Brodeur, S.H.D. Haddock, A. Malej, G.D. Parry, E. Eriksen, J. Quiñones, M. Acha, M. Harvey, J.M. Arthur, and W.M. Graham. 2012. Recurrent jellyfish blooms are a consequence of global oscillations. Proceedings of the National Academy of Sciences of the United States of America, 110: 1000–1005. http://dx.doi.org/10.1073/pnas.1210920110
Condon, R.H., W.M. Graham, C.M. Duarte, K.A. Pitt, C.H. Lucas, S.H.D. Haddock, K.R. Sutherland, K.L. Robinson, M.N. Dawson, M.B. Decker, C.E. Mills, J.E. Purcell, A. Malej, H. Mianzan, S.I. Uye, S. Gelcich, and L.P. Madin. 2012. Questioning the rise of gelatinous zooplankton in the world's oceans. BioScience, 62: 160–169. http://dx.doi.org/10.1525/bio.2012.62.2.9
Johnsen, S., T.M. Frank, S.H.D. Haddock, E.A. Widder, and C.G. Messing. 2012. Light and vision in the deep-sea benthos: I. Bioluminescence at 500–1000 m depth in the Bahamian Islands. Journal of Experimental Biology, 215: 3335–3343. http://doi.org/10.1242/jeb.072009
Powers, M.L., A.G. McDermott, N. Shaner, and S.H.D. Haddock. 2012. Expression and characterization of the calcium-activated photoprotein from the ctenophore Bathocyroe fosteri: Insights into light-sensitive photoproteins. Biochemical and Biophysical Research Communications, 431(2): 360–366. http://dx.doi.org/10.1016/j.bbrc.2012.12.026
Schnitzler, C.E., K. Pang, M.L. Powers, A.M. Reitzel, J.F. Ryan, D. Simmons, T. Tada, M. Park, J. Gupta, S.Y. Brooks, R.W. Blakesley, S. Yokoyama, S.H.D. Haddock, M.Q. Martindale, and A.D. Baxevanis. 2012. Genomic organization, evolution, and expression of photoprotein and opsin genes in Mnemiopsis leidyi: a new view of ctenophore photocytes. BMC Biology, 10: 1–26. http://dx.doi.org/10.1186/1741-7007-10-107
Shulman, I., B. Penta, M.A. Moline, S.H.D. Haddock, S. Anderson, M.J. Oliver, and P. Sakalaukus. 2012. Can vertical migrations of dinoflagellates explain observed bioluminescence patterns during an upwelling event in Monterey Bay, California?. Journal of Geophysical Research, 117: C01016. http://dx.doi.org/10.1029/2011JC007480
Haddock, S.H.D., and C.W. Dunn. Practical computing for biologists. Sunderland, Massachusetts: Sinauer Associates, 2011.
Osborn, K.J., S.H.D. Haddock, and G.W. Rouse. 2011. Swima (Annelida, Acrocirridae), holopelagic worms from the deep Pacific. Zoological Journal of the Linnean Society, 163: 663–678. http://dx.doi.org/10.1111/j.1096-3642.2011.00727.x
Shulman, I., M.A. Moline, B. Penta, S. Anderson, M. Oliver, and S.H.D. Haddock. 2011. Observed and modeled bio-optical, bioluminescent, and physical properties during a coastal upwelling event in Monterey Bay, California. Journal of Geophysical Research-Oceans, 116: 1–13. http://dx.doi.org/10.1029/2010JC006525
Bayha, K.M., M.N. Dawson, A.G. Collins, M.S. Barbeitos, and S.H.D. Haddock. 2010. Evolutionary relationships among scyphozoan jellyfish families based on complete taxon sampling and phylogenetic analyses of 18S and 28S ribosomal DNA. Integrative and Comparative Biology, 50: 436–455. http://dx.doi.org/10.1093/icb/icq074
Haddock, S.H.D. 2010. A plea for meaningful colors in ODV. Limnology and Oceanography Bulletin, 19: 44–45.
Haddock, S.H.D., M.A. Moline, and J.F. Case. 2010. Bioluminescence in the sea. Annual Review of Marine Science, 2: 443–493. http://dx.doi.org/10.1146/annurev-marine-120308-081028
Haddock, S.H.D., N. Mastroianni, and L.M. Christianson. 2010. A photoactivatable green-fluorescent protein from the phylum Ctenophora. Proceedings of the Royal Society B, 277: 1155–1160. http://dx.doi.org/10.1098/rspb.2009.1774
Pugh, P.R., and S.H.D. Haddock. 2010. Three new species of resomiid siphonophores (Siphonophora, Physonectae). Journal of the Marine Biological Association of the United Kingdom, 90: 1119–1143.
Thuesen, E.V., F.E. Goetz, and S.H.D. Haddock. 2010. Bioluminescent organs of two deep-sea arrow worms, Eukrohnia fowleri and Caecosagitta macrocephala, with further observations on bioluminescence in chaetognaths. Biological Bulletin, 219: 100–111. https://doi.org/10.1086/BBLv219n2p100
Gorokhova, E., M. Lehtiniemi, S. Viitasalo-Frösen, and S.H.D. Haddock. 2009. Molecular evidence for the occurrence of ctenophore Mertensia ovum in the northern Baltic Sea and implications for current distribution of the invasive species Mnemiopsis leidyi. Limnology and Oceanography, 54: 2025–2033.
Moline, M.A., S.M. Blackwell, J.F. Case, S.H.D. Haddock, C.M. Herren, C.M. Orrico, and E. Terrill. 2009. Bioluminescence to reveal structure and interaction of coastal planktonic communities. Deep-Sea Research Part II, 56: 232–245. http://dx.doi.org/10.1016/j.dsr2.2008.08.002
Osborn, K.J., S.H.D. Haddock, F. Pleijel, L.P. Madin, and G.W. Rouse. 2009. Deep-sea, swimming worms with luminescent "bombs". Science, 325: 964. http://dx.doi.org/10.1126/science.1172488
Collins, A.G., B. Bentlage, A. Lindner, D. Lindsay, S.H.D. Haddock, G. Jarms, J.L. Norenburg, T. Jankowski, and P. Cartwright. 2008. Phylogenetics of Trachylina (Cnidaria: Hydrozoa) with new insights on the evolution of some problematical taxa. Journal of the Marine Biological Association of the United Kingdom, 88: 1673–1685. http://dx.doi.org/10.1017/S0025315408001732
Dunn, C.W., A. Hejnol, D.Q. Matus, K. Pang, W.E. Browne, S.A. Smith, E. Seaver, G.W. Rouse, M. Obst, G.D. Edgecombe, M.V. Sorensen, S.H.D. Haddock, A. Schmidt-Rhaesa, A. Okusu, R.M. Kristensen, W.C. Wheeler, M.Q. Martindale, and G. Giribet. 2008. Broad phylogenomic sampling improves resolution of the animal tree of life. Nature, 452: 745–749. http://dx.doi.org/10.1038/nature06614
Haddock, S. H. D. 2008. Reconsidering evidence for potential climate-related increases in jellyfish. Limnology and Oceanography, 53: 2759–2762.
Schnitzler, C.E., R.J. Keenan, R. McCord, A. Matysik, L.M. Christianson, and S.H.D. Haddock. 2008. Spectral diversity of fluorescent proteins from the anthozoan Corynactis californica. Marine Biotechnology, 10: 328–342. http://dx.doi.org/10.1007/s10126-007-9072-7
Staaf, D.J., S. Camarillo-Coop, S.H.D. Haddock, A.C. Nyack, J. Payne, R. Ramirez-Rojo, C.A. Salinas-Zavala, B.A. Seibel, L. Trueblood, C. Widmer, and W.F. Gilly. 2008. Natural egg mass deposition by the Humboldt squid (Dosidicus gigas) in the Gulf of California and characteristics of hatchlings and paralarvae . Journal of the Marine Biological Association of the United Kingdom, 88: 759–770. http://dx.doi.org/10.1017/S0025315408001422
Browne, W.E., S.H.D. Haddock, and M.Q.Martindale. 2007. Phylogenetic analysis of lineage relationships among hyperiid amphipods as revealed by examination of the mitochondrial gene, cytochrome oxidase I (COI). Integrative and Comparative Biology, 47: 815–830. http://dx.doi.org/10.1093/icb/icm093
Haddock, S.H.D. 2007. Comparative feeding behavior of planktonic ctenophores. Integrative and Comparative Biology, 47: 847–853. http://dx.doi.org/10.1093/icb/icm088
Mills, C.E., and S.H.D. Haddock. 2007. Key to the ctenophora. Light and Smith's Manual: Intertidal invertebrates of the central California coast: 189–199.
Mills, C.E., S.H.D. Haddock, C.W. Dunn, and P.R. Pugh. 2007. Key to the siphonophora. Light and Smith's Manual: Intertidal invertebrates of the central California coast: 150–166.
Sweeney, A.M., S.H.D. Haddock, and S. Johnsen. 2007. Comparative visual acuity of coleolid cephalopods. Integrative and Comparative Biology, 47: 808–814.
Collins, A.G., B. Bentlage, G.I. Matsumoto, S.H.D. Haddock, K.J. Osborn, and B. Schierwater. 2006. Solution to the phylogenetic enigma of Tetraplatia, a worm-shaped cnidarian. Biological Letters, 2: 120–124. http://dx.doi.org/10.1098/rsbl.2005.0372
Gasca, R., E. Suárez-Morales, and S.H.D. Haddock. 2006. Symbiotic associations between crustaceans and gelatinous zooplankton in deep and surface waters off California. Marine Biology, 151: 233–242.
Miller, S.D, S.H.D. Haddock, C.D. Elvidge, and T.F. Lee. 2006. Twenty thousand leagues over the seas: The first satellite perspective on bioluminescent ‘milky seas’. International Journal of Remote Sensing, 27: 5131–5143. http://dx.doi.org/10.1080/01431160600554298
Dunn, C.W., P.R. Pugh, and S.H.D. Haddock. 2005. Marrus claudanielis, a new species of deep-sea physonect siphonophore (Siphonophora, Physonectae). Bulletin of Marine Science, 76: 699–714.
Dunn, C.W., P.R. Pugh, and S.H.D. Haddock. 2005. Molecular Phylogenetics of the Siphonophora (Cnidaria), with implications for the evolution of functional specialization. Systematic Biology, 54: 916–935. http://dx.doi.org/10.1080/10635150500354837
Haddock, S.H.D., and C.W. Dunn. 2005. The complex world of siphonophores. JMBA Global Marine Environment, 2: 24–25.
Haddock, S.H.D., C.W. Dunn, and P.R. Pugh. 2005. A reexamination of siphonophore terminology and morphology, applied to the description of two new prayine species with remarkable bio-optical properties. Journal of the Marine Biological Association of the United Kingdom, 85: 695–707. https://doi.org/10.1017/S0025315405011616
Haddock, S.H.D., C.W. Dunn, P.R. Pugh, and C.E. Schnitzler. 2005. Bioluminescent and red-fluorescent lures in a deep-sea siphonophore. Science, 309: 263. http://dx.doi.org/10.1126/science.1110441
Herren, C.M., S.H.D. Haddock, C. Johnson, M.A. Moline, C.M. Orrico, and J.F. Case. 2005. A multi-platform bathyphotometer for fine-scale, coastal bioluminescence research. Limnology and Oceanography: Methods, 3: 247–262.
Miller, S.D, S.H.D. Haddock, C.D. Elvidge, and T.F. Lee. 2005. Detection of a bioluminescent milky sea from space. Proceedings of the National Academy of Sciences, 102: 14181–14184. http://dx.doi.org/10.1073/pnas.0507253102