Chavez, F.P., M. Min, K. Pitz, N. Truelove, J. Baker, D. LaScala-Grunewald, M. Blum, K. Walz, C. Nye, A. Djurhuus, R.J. Miller, K.D. Goodwin, F.E. Muller-Karger, H.A. Ruhl, and C.A. Scholin. 2021. Observing life in the sea using environmental DNA. Oceanography, 34: 102–119. https://doi.org/10.5670/oceanog.2021.218
Zhang, Y., B. Kieft, B.W. Hobson, B.Y. Raanan, S. Urmy, K.J. Pitz, C.M. Preston, B. Roman, K.J. Benoit-Bird, J.M. Birch, F.P. Chavez, and C.A. Scholin. 2021. Persistent sampling of vertically migrating biological layers by an autonomous underwater vehicle within the beam of a seabed-mounted echosounder. IEEE Journal of Oceanic Engineering, 46: 497–508. https://doi.org/10.1109/JOE.2020.2982811
Zhang, Y., J.P. Ryan, B.W. Hobson, B. Kieft, A. Romano, B. Barone, C.M. Preston, B. Roman, B.Y. Raanan, D. Pargett, M. Dugenne, A.E. White, F. Henderikx Freitas, S. Poulos, S.T. Wilson, E.F. DeLong, D.M. Karl, J.M. Birch, J.G. Bellingham, and C.A. Scholin. 2021. A system of coordinated autonomous robots for Lagrangian studies of microbes in the oceanic deep chlorophyll maximum. Science Robotics, 6: 1–11. https://doi.org/10.1126/scirobotics.abb9138
Sepulveda, A.J., J.M. Birch, E.P. Barnhart, C.M. Merkes, K.M. Yamahara, R. Marin III, S.M. Kinsey, P.R. Wright, and C. Schmid. 2020. Robotic environmental DNA bio-surveillance of freshwater health. Scientific Reports, 10: 1–8. https://doi.org/10.1038/s41598-020-71304-3
Evans, S., J. Birch, J. Breier Jr., M. Jakuba, M. Saito, and J. Robidart. 2019. Ocean robots uncover microbial secrets. Microbiology Today, Oceans(February 2019): 18–21. https://microbiologysociety.org/publication/past-issues/oceans.html
Kiene, R.P., B. Nowinski, K. Esson, C. Preston, R. Marin III, J. Birch, C. Scholin, J. Ryan, and M.A. Moran. 2019. Unprecedented DMSP Concentrations in a Massive Dinoflagellate Bloom in Monterey Bay, CA. Geophysical Research Letters, 46: 12279–12288. https://doi.org/10.1029/2019GL085496
Kolody, B.C., J.P. McCrow, L. Zeigler Allen, F.O. Aylward, K.M. Fontanez, A. Moustafa, M. Moniruzzaman, F.P. Chavez, C.A. Scholin, E.E. Allen, A.Z. Worden, E.F. DeLong, and A.E. Allen. 2019. Diel transcriptional response of a California Current plankton microbiome to light, low iron, and enduring viral infection. The ISME Journal, 13: 2817–2833. https://doi.org/10.1038/s41396-019-0472-2
Krolicka, A., C. Boccadoro, M.M. Nilsen, E. Demir-Hilton, J. Birch, C. Preston, C. Scholin, and T. Baussant. 2019. Identification of microbial key-indicators of oil contamination at sea through tracking of oil biotransformation: An Arctic field and laboratory study. Science of the Total Environment, 696: 1–13. https://doi.org/10.1016/j.scitotenv.2019.133715
Nowinski, B., C.B. Smith, C.M. Thomas, K. Esson, R. Marin III, C.M. Preston, J.M. Birch, C.A. Scholin, M. Huntemann, A. Clum, B. Foster, B. Foster, S. Roux, K. Palaniappan, N. Varghese, S. Mukherjee, T.K.B. Reddy, C. Daum, A. Copeland, I.M.A. Chen, N.N. Ivanova, N.C. Kyrpides, T. Glavina del Rio, W.B. Whitman, R.P. Kiene, E.A. Eloe-Fadrosh, and M.A. Moran. 2019. Microbial metagenomes and metatranscriptomes during a coastal phytoplankton bloom. Scientific Data, 6: 1–7. https://doi.org/10.1038/s41597-019-0132-4
Nowinski, B., J. Motard-Cote, M. Landa, C.M. Preston, C.A. Scholin, J.M. Birch, R.P. Kiene, and M.A. Moran. 2019. Microdiversity and temporal dynamics of marine bacterial dimethylsulfoniopropionate genes. Environmental Microbiology, 21: 1687–1701. https://doi.org/10.1111/1462-2920.14560
Yamahara, K.M., C.M. Preston, J. Birch, K.R. Walz, R. Marin III, S. Jensen, D. Pargett, B. Roman, W. Ussler III, Y. Zhang, J. Ryan, B. Hobson, B. Kieft, B.Y. Raanan, K.D. Goodwin, F.P. Chavez, and C.A. Scholin. 2019. In situ Autonomous Acquisition and Preservation of Marine Environmental DNA Using an Autonomous Underwater Vehicle. Frontiers in Marine Science, 6: 1–14. https://doi.org/10.3389/fmars.2019.00373
Zhang, Y., J.P. Ryan, B. Kieft, B.W. Hobson, R.S. McEwen, M.A. Godin, J.B. Harvey, B. Barone, J.G. Bellingham, J.M. Birch, C.A. Scholin, and F.P. Chavez. 2019. Targeted sampling by autonomous underwater vehicles. Frontiers in Marine Science, 6: 1–12. https://doi.org/10.3389/fmars.2019.00415
Birch, J.M. 2018. Collecting and processing samples in remote and dangerous places: The environmental sample processor as a case study. Pure and Applied Chemistry, 90: 1625–1630. https://doi.org/10.1515/pac-2018-0201
Birch, J.M., B. Barone, E. DeLong, G. Foreman, K. Gomes, B. Hobson, S. Jensen, D.M. Karl, B. Kieft, T. O'Reilly, D. Pargett, C. Preston, B. Roman, A. Romano, J. Ryan, C.A. Scholin, W. Ussler, K. Yamahara, and Y. Zhang. 2018. Autonomous targeted sampling of the deep chlorophyll maximum layer in a subtropical north Pacific eddy. OCEANS 2018 MTS/IEEE Charleston, pp. 1-5. doi: 10.1109/OCEANS.2018.8604898.
Bowers, H.A., J.P. Ryan, K. Hayashi, A.L. Woods, R. Marin III, G.J. Smith, K.A. Hubbard, G. Doucette, C. Mikulski, A.G. Gellene, Y. Zhang, R. Kudela, D. Caron, J. Birch, and C. Scholin. 2018. Diversity and toxicity of Pseudo-nitzschia species in Monterey Bay: Perspectives from targeted and adaptive sampling. Harmful Algae, 78: 129–141. https://doi.org/10.1016/j.hal.2018.08.006
Hobson, B., B. Kieft, B.Y. Raanan, Y. Zhang, J. Birch, J.P. Ryan, and F.P. Chavez. 2018. An autonomous vehicle-based open ocean Lagrangian observatory. 2018 IEEE OES Autonomous Underwater Vehicle Symposium, Porto, 6–9 November 2018. IEEE Oceanic Engineering Society, Laboratório de Sistemas e Tecnologia Subaquática, Universidade do Porto.
Chavez, F.P., P.G. Brewer, and C.A. Scholin. 2017. Celebrating 30 years of ocean science technology at the Monterey Bay Aquarium Research Institute. Oceanography, 30: 18–25. https://doi.org/10.5670/oceanog.2017.420
Chavez, F.P., P.G. Brewer, and C.A. Scholin. Special issue on celebrating 30 years of ocean science and technology at the Monterey Bay Aquarium Research Institute. Oceanography, 30. https://tos.org/oceanography/issue/volume-30-issue-04
Olins, H.C., D.R. Rogers, C. Preston, W. Ussler III, D. Pargett, S. Jensen, B. Roman, J.M. Birch, C.A. Scholin, M.F. Haroon, and P.R. Girguis. 2017. Co-registered Geochemistry and Metatranscriptomics Reveal Unexpected Distributions of Microbial Activity within a Hydrothermal Vent Field. Frontiers in Microbiology, 8: 1–18. https://doi.org/10.3389/fmicb.2017.01042
Ryan, J.P., R.M. Kudela, J.M. Birch, M. Blum, H.A. Bowers, F.P. Chavez, G.J. Doucette, K. Hayashi, R. Marin III, C.M. Mikulski, T. Pennington, C.A. Scholin, G.J. Smith, A. Woods, and Y. Zhang. 2017. Causality of an extreme harmful algal bloom in Monterey Bay, California, during the 2014–2016 northeast Pacific warm anomaly. Geophysical Research Letters, 44: 5571–5579. https://doi.org/10.1002/2017GL072637
Scholin, C.A., J. Birch, S. Jensen, R. Marin III, E. Massion, D. Pargett, C. Preston, B. Roman, and W. Ussler III. 2017. The quest to develop ecogenomic sensors: A 25-Year history of the Environmental Sample Processor (ESP) as a case study. Oceanography, 30: 100–113. https://doi.org/10.5670/oceanog.2017.427
Bowers, H.A., R. Marin III, J.M. Birch, C.A. Scholin, and G.J. Doucette. 2016. Recovery and identification of Pseudo-nitzschia (Bacillariophyceae) frustules from natural samples acquired using the environmental sample processor. Journal of Phycology, 52: 135–140. http://dx.doi.org/10.1111/jpy.12369
Herfort, L., C. Seaton, M. Wilkin, B. Roman, C.M. Preston, R. Marin, K. Seitz, M.W. Smith, V. Haynes, C.A. Scholin, A.M. Baptista, and H.M. Simon. 2016. Use of continuous, real-time observations and model simulations to achieve autonomous, adaptive sampling of microbial processes with a robotic sampler. Limnology and Oceanography: Methods, 14: 50–67. http://dx.doi.org/10.1002/lom3.10069
Pargett, D.M., J.M. Birch, C.M. Preston, J.P. Ryan, Y. Zhang, and C.A. Scholin. 2015. Development of a mobile ecogenomic sensor. Proceedings of the Marine Technology Society / Institute of Electrical and Electronics Engineers Oceans Conference, 2015: 1–6.
Seegers, B.N., J.M. Birch, R. Marin, C.A. Scholin, D.A. Caron, E.L. Seubert, M.D.A. Howard, G.L. Robertson, and B.H. Jones. 2015. Subsurface seeding of surface harmful algal blooms observed through the integration of autonomous gliders, moored environmental sample processors, and satellite remote sensing in southern California. Limnology and Oceanography, 60: 754–764. http://dx.doi.org/10.1002/lno.10082
Varaljay, V.A., J. Robidart, C.M. Preston, S.M. Gifford, B.P. Durham, A.S. Burns, J.P. Ryan, R. Marin, III, R.P. Kiene, J.P. Zehr, C.A. Scholin, and M. Ann Moran. 2015. Single-taxon field measurements of bacterial gene regulation controlling DMSP fate. ISME Journal, 9: 1692. http://dx.doi.org/10.1038/ismej.2015.94
Yamahara, K.M., E. Demir-Hilton, C.M. Preston, R. Marin III, D. Pargett, B. Roman, S. Jensen, J.M. Birch, A.B. Boehm, and C.A. Scholin. 2015. Simultaneous monitoring of faecal indicators and harmful algae using an in-situ autonomous sensor. Letters in Applied Microbiology, 61: 130–138. http://dx.doi.org/10.1111/lam.12432
Zhang, Y., B. Kieft, R. McEwen, M.J. Stanway, J. Bellingham, J. Ryan, B. Hobson, D. Pargett, J. Birch, and C. Scholin. 2015. Tracking and sampling of a phytoplankton patch by an autonomous underwater vehicle in drifting mode. Proceedings of the Marine Technology Society / Institute of Electrical and Electronics Engineers Oceans Conference, Genova, 18–21 May 2015.
Ottesen, E.A., C.R. Young, S.M. Gifford, J.M. Eppley, R. Marin III, S.C. Schuster, C.A. Scholin, and E.F. DeLong. 2014. Multispecies diel transcriptional oscillations in open ocean heterotrophic bacterial assemblages. Science, 345: 207–212. http://dx.doi.org/10.1126/science.1252476
Robidart, J.C., M.J. Church, J.P. Ryan, F. Ascani, S.T. Wilson, D. Bombar, R. Marin III, K.J. Richards, D.M. Karl, C.A. Scholin, and J.P. Zehr. 2014. Ecogenomic sensor reveals controls on N2-fixing microorganisms in the North Pacific Ocean. The ISME Journal, 8: 1175–1185. http://dx.doi.org/10.1038/ismej.2013.244
Ottesen, E.A., C.R. Young, J.M. Eppley, J.P. Ryan, F.P. Chavez, C.A. Scholin, and E.F. DeLong. 2013. Pattern and synchrony of gene expression among sympatric marine microbial populations. Proceedings of the National Academy of Sciences, 110: E488–E497. http://dx.doi.org/10.1073/pnas.1222099110
Pargett, D.M., S.D. Jensen, B.A. Roman, C.M. Preston, W. Ussler III, P.R. Girguis, R. Marin III, J.M. Birch, and C.A. Scholin. 2013. Deep water instrument for microbial identification, quantification, and archiving. Proceedings of Marine Technology Society/Institute of Electrical and Electronics Engineers Oceans '13, San Diego, 23–26 September 2013.
Ussler III, W., C.M. Preston, P. Tavormina, D. Pargett, S. Jensen, B. Roman, R. Marin III, S.R. Shah, P.R. Girguis, J.M. Birch, V.J. Orphan, and C. Scholin. 2013. Autonomous application of quantitative PCR in the deep sea: In situ surveys of aerobic methanotrophs using the deep-sea Environmental Sample Processor. Environmental Science and Technology, 47: 9339–9346. http://dx.doi.org/10.1021/es4023199
Harvey, J.B.J., J.P. Ryan, R. Marin III, C.M. Preston, N. Alvarado, C.A. Scholin, and R.C. Vrijenhoek. 2012. Robotic sampling, in situ monitoring and molecular detection of marine zooplankton. Journal of Experimental Marine Biology and Ecology, 413: 60–70. http://dx.doi.org/10.1016/j.jembe.2011.11.022
Robidart, J.C., C.M. Preston, R.W. Paerl, K.A. Turk, A.C. Mosier, C.A. Francis, C.A. Scholin, and J.P. Zehr. 2012. Seasonal Synechococcus and Thaumarchaeal population dynamics examined with high resolution with remote in situ instrumentation. The ISME Journal, 6: 513–523. http://dx.doi.org/10.1038/ismej.2011.127
Ottesen, E.A., R. Marin III, C.M. Preston, C.R. Young, J.P. Ryan, C.A. Scholin, and E.F. DeLong. 2011. Metatranscriptomic analysis of autonomously collected and preserved marine bacterioplankton. The ISME Journal, 5: 1881–1895. http://dx.doi.org/10.1038/ismej.2011.70
Preston, C.M., A. Harris, J.P. Ryan, B. Roman, R. Marin III, S. Jensen, C. Everlove, J. Birch, J.M. Dzenitis, D. Pargett, M. Adachi, K. Turk, J.P. Zehr, and C.A. Scholin. 2011. Underwater application of quantitative PCR on an ocean mooring. PLoS ONE, 6: E22522. http://dx.doi.org/10.1371/journal.pone.0022522
Ryan, J., D. Greenfield, R. Marin III, C. Preston, B. Roman, S. Jensen, D. Pargett, J. Birch, C. Mikulski, G. Doucette, and C. Scholin. 2011. Harmful phytoplankton ecology studies using an autonomous molecular analytical and ocean observing network. Limnology and Oceanography, 56: 1255–1272. http://dx.doi.org/10.4319/lo.2011.56.4.1255
Saito, M.A., V.V. Bulygin, D.M. Moran, C. Taylor, and C. Scholin. 2011. Examination of microbial proteome preservation techniques applicable to autonomous environmental sample collection. Frontiers in Aquatic Microbiology, 2: 1–10. http://dx.doi.org/10.3389/fmicb.2011.00215
Zehr, J.P., J. Robidart, and C. Scholin. 2011. Global environmental change demands a deeper understanding of how marine microbes drive global ecosystems. Microbe Magazine, 6: 169–175.
Marin III, R., and C. Scholin. 2010. Sandwich Hybridization. IOC Manuals and Guides: Microscopic and molecular methods for quantitative phytoplankton analysis, 55: 110.
Scholin, C. 2010. What are “ecogenomic sensors?” A review and thoughts for the future. Ocean Science, 6: 51–60. http://dx.doi.org/10.5194/os-6-51-2010
Doucette, G.J., C. Mikulski, K.L. Jones, K.L. King, D. Greenfield, R. Marin III, S. Jensen, B. Roman, C.T. Elliott, and C. Scholin. 2009. Remote, subsurface detection of the algal toxin domoic acid onboard the Environmental Sample Processor: Assay development and initial field trials. Harmful Algae, 8: 880–888.
Haywood, A.J., C. Scholin, R. Marin III, K. Petrik, R. Pigg, M. Garrett, K.A. Steidinger, and C. Heil. 2009. Detection of Karenia brevis in Florida coastal waters using sandwich hybridization assays in two formats. Proceedings of the Sixth International Conference on Molluscan Shellfish Safety.
Preston, C.M., R. Marin III, S.D. Jensen, J. Feldman, J.M. Birch, E.I. Massion, E.F. DeLong, M. Suzuki, K. Wheeler, and C.A. Scholin. 2009. Near real-time, autonomous detection of marine bacterioplankton on a coastal mooring in Monterey Bay, California, using rRNA-targeted DNA probes. Environmental Microbiology, 11: 1168–1180.
Scholin, C., G. Doucette, S. Jensen, B. Roman, D. Pargett, R. Marin III, C. Preston, W. Jones, J. Feldman, C. Everlove, A. Harris, N. Alvarado, E. Massion, J. Birch, D. Greenfield, R.C. Vrijenhoek, C. Mikulski, and K. Jones. 2009. Remote detection of marine microbes, small invertebrates, harmful algae and biotoxins using the Environmental Sample Processor (ESP). Oceanography, 22: 158–167.
Greenfield, D., R. Marin III, G.J. Doucette, C. Mikulski, S. Jensen, B. Roman, N. Alvarado, and C.A. Scholin. 2008. Field applications of the second-generation Environmental Sample Processor (ESP) for remote detection of harmful algae: 2006–2007. Limnology and Oceanography: Methods, 6: 667–679.
Jones, W.J., C.M. Preston, R. Marin III, C.A. Scholin, and R.C. Vrijenhoek. 2008. A robotic molecular method for in situ detection of marine invertebrate larvae. Molecular Ecology Resources, 8: 540–550. http://dx.doi.org/10.1111/j.1471-8286.2007.02021.x
Mikulski, C.M., Y.T. Park, K.L. Jones, C.K. Lee, W.A. Lim, C.A. Scholin, and G.J. Doucette. 2008. Development and field application of rRNA-targeted probes for the detection of Cochlodinium ploykrikoides in Korean coastal waters using whole cell and sandwich hybridization formats. Harmful Algae, 7: 347–359.
Scholin, C.A., G.J. Doucette, and A.D. Cembella. 2008. Prospects for developing automated systems for in situ detection of harmful algae and their toxins. Real-Time Coastal Observing Systems for Ecosystem Dynamics and Harmful Algal Blooms: 413–462.
Haywood, A.J., C.A. Scholin, R. Marin III, K.A. Steidinger, C. Heil, and J. Ray. 2007. Molecular detection of the brevetoxin-producing dinoflagellate Karenia brevis and closely related species using rRNA-targeted probes and a semiautomated sandwich hybridization assay. Journal of Phycology, 43: 1271–1286. http://dx.doi.org/10.1111/j.1529-8817.2007.00407.x
Paul, J., C.A. Scholin, G. Van den Engh, and M.J. Perry. 2007. In-situ instrumentation. Oceanography, 20: 58–66.
Roman, B., C.A. Scholin, S. Jensen, E. Massion, R. Marin III, C. Preston, D. Greenfield, W. Jones, and K. Wheeler. 2007. Controlling a robotic marine water sampler with the Ruby scripting language. Journal of American Laboratory Automation, 12: 56–61.
Goffredi, S.K., W.J. Jones, C.A. Scholin, R. Marin III, and R.C. Vrijenhoek. 2006. Molecular detection of marine invertebrate larvae. Marine Biotechnology, 8: 149–160. http://dx.doi.org/10.1007/s10126-005-5016-2
Greenfield, D.I., R. Marin III, S. Jensen, E. Massion, B. Roman, J. Feldman, and C.A. Scholin. 2006. Application of the environmental sample processor (ESP) methodology for quantifying Pseudo-nitzschia australis using ribosomal RNA-targeted probes in sandwich and fluorescent in situ hybridization formats. Limnology and Oceanography: Methods, 4: 426–435.
Lundholm, N., Ø. Moestrup, Y. Kotaki, C.A. Scholin, and P. Miller. 2006. Inter- and intraspecific variation of the Pseudo-nitzschia delicatissima-complex (Bacillariophyceae) illustrated by rRNA probes, morphological data and phylogenetic analyses identification of P. decipiens and P. dolorosa. Journal of Phycology, 42: 464–481.
Metfies, K., K. Töbe, C.A. Scholin, and L.K. Medlin. 2006. Laboratory and field applications of ribosomal RNA probes to aid the detection and monitoring of harmful algae. Ecology of Harmful Algae: 311–325.
O'Halloran, C., M.W. Silver, T.R. Holman, and C.A. Scholin. 2006. Heterosigma akashiwo in Central California waters. Harmful Algae, 5: 124–132. http://dx.doi.org/10.1016/j.hal.2005.06.009
Scholin, C.A., S. Jensen, B. Roman, E. Massion, R. Marin III, C. Preston, D. Greenfield, W. Jones, and K. Wheeler. 2006. The Environmental Sample Processor (ESP)― An autonomous robotic device for detecting microorganisms remotely using molecular probe technology. Proceedings of the Marine Technology Society / Institute of Electrical and Electronics Engineers Oceans Conference.
Anderson, D.M., D.M. Kulis, B.A. Keafer, K.E. Gribble, R. Marin III, and C.A. Scholin. 2005. Identification and enumeration of Alexandrium spp. from the Gulf of Maine using molecular probes. Deep-Sea Research Part II, 52: 2467–2490. http://dx.doi.org/10.1016/j.dsr2.2005.06.015
Ayers, K., L. Rhodes, J. Tyrrell, M. Gladstone, and C.A. Scholin. 2005. International accreditation of sandwich hybridisation assay format DNA probes for micro-algae. New Zealand Journal of Marine and Freshwater Research, 39: 1225–1231.
Babin, M., J.J. Cullen, C.S. Roesler, P.L. Donaghay, G.J. Doucette, M. Kahru, M.R. Lewis, C.A. Scholin, M.E. Sieracki, and H.M. Sosik. 2005. New approaches and technologies for observing harmful algal blooms. Oceanography, 18: 210–227.
Goffredi, S.K., W.J. Jones, C.A. Scholin, R. Marin III, and R.C. Vrijenhoek. 2005. Molecular detection of marine larvae. Marine Molecular Biotechnology, 8: 1–12.
LaGier, M.J., C.A. Scholin, J.W. Fell, J. Wang, and K.D. Goodwin. 2005. An electrochemical RNA hybridization assay for detection of the fecal indicator bacterium Escherichia coli. Marine Pollution Bulletin, 50: 1251–1261. http://dx.doi.org/10.1016/j.marpolbul.2005.04.034
Roman, B., C.A. Scholin, S. Jensen, R. Marin III, E. Massion, and J. Feldman. 2005. The second generation environmental sample processor: Evolution of a robotic underwater biochemical laboratory. Proceedings of the Marine Technology Society / Institute of Electrical and Electronics Engineers Oceans Conference.
Ryan, J.P., H.M. Dierssen, R.M. Kudela, C.A. Scholin, K.S. Johnson, J.M. Sullivan, A.M. Fischer, E.V. Rienecker, P.R. McEnaney, and F.P. Chavez. 2005. Coastal ocean physics and red tides: An example from Monterey Bay, California. Oceanography, 18: 246–255.
Matweyou, J.A., D.A. Stockwell, C. Scholin, S. Hall, V.L. Trainer, J.D. Ray, T.E. Whitledge, A.R. Childers, and F.G. Plumley. 2004. Use of Alexandrium rRNA targeted probes to predict PSP events on Kodiak Island, Alaska. Harmful Algae 2002: 267–269.
Miller, P.E., R. Marin III, C. Scholin, J.C. Goldman, G. Doucette, and C. Powell. 2004. Variation in reactivity of rRNA-targeted probes towards Pseudo-nitzschia multiseries grown in nitrate- and silicate-limited continuous cultures. Harmful Algae 2002: 270–272.
Rhodes, L., A. Haywood, J. Adamson, K. Ponikla, and C. Scholin. 2004. DNA probes for the rapid detection of Karenia species in New Zealand's coastal waters. Harmful Algae 2002: 273–275.
Matweyou, J.A., D.A. Stockwell, C.A. Scholin, S. Hall, V.L. Trainer, J.D. Ray, T.E. Whitledge, A.R. Childers, and F.G. Plumley. 2003. Use of Alexandrium rRNA targeted probes to predict PSP events on Kodiak Island, Alaska. Proceedings of the Xth International Conference on Harmful Algae.
Scholin, C.A. 2003. Molecular biological technologies applicable to autonomous and lagrangian platforms. Autonomous and Lagrangian Platforms and Sensors Workshop.
Scholin, C.A., E. Vrieling, L. Peperzak, L. Rhodes, and P. Rublee. 2003. Detection of HAB species using lectin, antibody and DNA probes. In Manual on Harmful Marine Microalgae, edited by G.M. Hallegraeff, D.M. Anderson, and A.D. Cembella, 131–164. Paris: UNESCO, 2003.
Peperzak, L., B. Sandee, C. Scholin, P. Miller, and L. Van Nieuwerburgh. 2002. Application and flow cytometric detection of antibody and rRNA probes to Gymnodinium mikimotoi (Dinophyceae) and Pseudo-nitzschia multiseries (Bacillariophyceae). Harmful Algal Blooms 2000: 206–209.
Rhodes, L., C. Scholin, J. Tyrrell, J. Adamson , and K. Todd. 2002. The integration of DNA probes into New Zealand's routine phytoplankton monitoring programmes. Harmful Algal Blooms 2000: 429–432.
Scholin, C.A., E. Vrieling, L. Peperzak, L. Rhodes, and P. Rublee. 2002. Detection of HAB species using lectin, antibody, and DNA probes. Manual on Harmful Marine Microalgae.
Tyrrell, J.V., L.B. Connell, and C.A. Scholin. 2002. Monitoring for Heterosigma akashiwo using a sandwich hybridization assay. Harmful Algae, 1: 205–214.
Tyrrell, J.V., P.R. Bergquist, P.L. Bergquist, and C.A. Scholin. 2001. Detection and enumeration of Heterosigma akashiwo and Fibrocapsa japonica (Raphidophyceae) using rRNA-targeted oligonucleotide probes. Phycologia, 40: 457–467. http://dx.doi.org/10.2216/i0031-8884-40-5-457.1
Miller, P.E., and C.A. Scholin. 2000. On detection of Pseudo-nitzschia (Bacillariophyceae) species using whole cell hybridization: Sample fixation and stability. Journal of Phycology, 36: 251–265.
Miller, P.E., and C.A. Scholin. 2000. On detection of Pseudo-nitzschia species using rRNA-targeted probes: Sample fixation and stability. Journal of Phycology, 36: 238–250.
Rhodes, L.L., J. Adamson, and C.A. Scholin. 2000. Pseudo-nitzschia multistriata (Bacillariophyceae) in New Zealand. New Zealand Journal of Marine and Freshwater Research, 34: 463–467.
Scholin, C.A. 2000. Application of DNA probes for detection of harmful algae. Journal of Shellfish Research, 19: 637.
Scholin, C.A., F. Gulland, G.J. Doucette, S. Benson, M. Busman, F.P. Chavez, J. Cordaro, R. DeLong, A. De Vogelaere, J. Harvey, M. Haulena, K. Lefebvre, T. Lipscomb, S. Loscutoff, L.J. Lowenstine, R. Marin III, P.E. Miller, W.A. McLellan, P.D.R. Moeller, C.L. Powell, T. Rowles, P. Silvagni, M.W. Silver, T. Spraker, V. Trainer, and F.M. Van Dolah. 2000. Mortality of sea lions along the central California coast linked to a toxic diatom bloom. Nature, 403: 80–84. http://dx.doi.org/10.1038/47481
Bates, S.S., C. Scholin, M. Ferguson, and C. Leger. 1999. Application of ribosomal RNA targeted probes to detect Pseudo-nitzschia multiseries and P. pungens in Atlantic Canadian waters. Canadian Technical reports on fisheries and aquatic sciences, 2261: 63–67.
Parsons, M.L., C. Scholin, G.J. Doucette, G.A. Fryxell, Q. Dortch, and T.M. Soniat. 1999. Pseudo-nitzschia species (Bacillariophyceae) in Louisiana coastal waters: Molecular probe field trials, genetic variability and domoic acid analyses. Journal of Phycology, 35: 1368–1378. http://dx.doi.org/10.1046/j.1529-8817.1999.3561368.x
Scholin, C., R. Marin III, P.E. Miller, G.J. Doucette, C.L. Powell, J. Howard, P. Haydock, and J. Ray. 1999. Application of DNA probes and a receptor binding assay for detection of Pseudo-nitzschia (Bacillariophyceae) species and domoic acid activity in cultured and natural samples. Journal of Phycology, 35: 1356–1367.
Scholin, C.A., R. Marin III, P.E. Miller, G.J. Doucette, C.L. Powell, P. Haydock, J. Howard, and J. Ray. 1999. DNA probes and a receptor-binding assay for detection of Pseudo-nitzschia (Bacillariophyceae) species and domoic acid activity in cultured and natural samples. Journal of Phycology, 35: 1356–1367. http://dx.doi.org/10.1046/j.1529-8817.1999.3561356.x
Miller, P.E., and C.A. Scholin. 1998. Identification and enumeration of cultured and wild Pseudo-Nitzschia (Bacillariophyceae) using species-specific LSU rRNA-targeted fluorescent probes and filter-based whole cell hybridization. Journal of Phycology, 34: 371–382. http://dx.doi.org/10.1046/j.1529-8817.1998.340371.x
Rhodes, L.L., C. Scholin, I. Garthwaite, A. Haywood, and A. Thomas. 1998. Domoic acid-producing Pseudo-nitzschia species educed by whole cell DNA probebased and immunochemical assays. Harmful algae, 274–277.
Scholin, C., G. Massion, E. Mellinger, M. Brown, D.K. Wright, and D. Cline. 1998. The development and application of molecular probes and novel instrumentation for detection of harmful algae. Ocean community conference '98, MTS, 1: 367–370.
Scholin, C.A. 1998. Development of nucleic acid probe-based diagnostics for identifying and enumerating harmful algal bloom species. The Physiological Ecology of Harmful Algal Blooms.
Scholin, C.A. 1998. Morphological, genetic, and biogeographic relationships of the toxic dinoflagellates Alexandrium tamarense, A. catenella, and A. fundyense.
Cangelosi, G.A., A.M. Hamlin, R. Marin III, and C.A. Scholin. 1997. Detection of stable pre-rRNA in toxigenic Pseudo-nitzschia species. Applied and Environmental Microbiology, 63: 4859–4865.
Scholin, C., P. Miller, K. Buck, F. Chavez, P. Harris, P. Haydock, J. Howard, and G. Cangelosi. 1997. Detection and quantification of Pseudo-nitzschia australis in cultured and natural populations using LSU rRNA-targeted probes. Limnology and Oceanography, 42: 1265–1272.
Miller, P.E., and C.A. Scholin. 1996. Identification of cultured Pseudo-nitzschia (Bacillariophyceae) using species-specific LSU rRNA-targeted fluorescent probes. Journal of Phycology, 32: 646–655.
Scholin, C.A., and D.M. Anderson. 1996. Identification of Alexandrium species and strains using RFLP analysis of PCR-amplified LSU rDNA. Harmful and toxic algal blooms: 451–454.
Scholin, C.A., and D.M. Anderson. 1996. LSU rDNA-based RFLP assays for discriminating species and strains of Alexandrium (Dinophyceae). Journal of Phycology, 32: 1022–1035.
Scholin, C.A., K.R. Buck, T. Britschgi, G. Cangelosi, and F.P. Chavez. 1996. Identification of Pseudo-nitzschia australis (Bacillariophyceae) using rRNA-targeted probes in whole cell and sandwich hybridization formats. Phycologia, 35: 190–197.
Scholin, C.A., P. Miller, K.R. Buck, F.P. Chavez, G. Cangelosi, P. Haydock, J. Howard, and P. Harris. 1996. DNA probe-based detection of harmful algal species using Pseudo-nitzschia species as models. Harmful and toxic algal blooms: 439–442.
Vrieling, E.G., R.P.T. Koeman, C.A. Scholin, P. Scheerman, L. Peperzak, M. Veenhuis, and W.W.C. Gieskes. 1996. Identification of a domoic acid-producing Pseudo-nitzschia species (Bacillariophyceae) in the Dutch Wadden Sea with electron microscopy and molecular probes. European Journal of Phycology, 31: 333–340.