Barry, J.P., S.Y. Litvin, A. DeVogelaere, D.W. Caress, C.F. Lovera, A.S. Kahn, E.J. Burton, C. King, J.B. Paduan, C.G. Wheat, F. Girard, S. Sudek, A.M. Hartwell, A.D. Sherman, P.R. McGill, A. Schnittger, J.R. Voight, and E.J. Martin. 2023. Abyssal hydrothermal springs—Cryptic incubators for brooding octopus. Science Advances, 9(34): 1–13. science.org/doi/10.1126/sciadv.adg3247
LaScala-Grunewald, D., N.H.N. Low, J.P. Barry, J.A. Brown, C. King, F.P. Chavez, and H.A. Ruhl. 2022. Building on a human-centred, iterative, and agile co-design strategy to facilitate the availability of deep ocean data. ICES Journal of Marine Science, 2022 (fsac145): 1–5. https://doi.org/10.1093/icesjms/fsac145
Montseny, M., C. Linares, M. Carreiro-Silva, L.A. Henry, D. Billett, E.E. Cordes, C.J. Smith, N. Papadopoulou, M. Bilan, F. Girard, H.L. Burdett, A. Larsson, S. Strömberg, N. Viladrich, J.P. Barry, P. Baena, A. Godinho, J. Grinyó, A. Santín, T. Morato, A.K. Sweetman, J.M. Gili, and A. Gori. 2021. Active ecological restoration of cold-water corals: techniques, challenges, costs, and future directions. Frontiers in Marine Science, 8: 1–21. https://doi.org/10.3389/fmars.2021.621151
Aalto, E.A., J.P. Barry, C.A. Boch, S.Y. Litvin, F. Micheli, C.B. Woodson, and G.A. De Leo. 2020. Abalone populations are most sensitive to environmental stress effects on adult individuals. Marine Ecology Progress Series, 643: 75–85. https://doi.org/10.3354/meps13320
Fagundes, M., S.Y. Litvin, F. Micheli, G. De Leo, C.A. Boch, J.P Barry., S. Omidvar, and C.B. Woodson. 2020. Downscaling global ocean climate models improves estimates of exposure regimes in coastal environments. Scientific Reports, 10: 1–11. https://doi.org/10.1038/s41598-020-71169-6
Gallo, N.D., M. Beckwith, C.L. Wei, L.A. Levin, L. Kuhnz, and J.P. Barry. 2020. Dissolved oxygen and temperature best predict deep-sea fish community structure in the Gulf of California with climate change implications. Marine Ecology Progress Series, 637: 159–180. https://doi.org/10.3354/meps13240
López-Garrido, P.H., J.P. Barry, J.I. González-Gordillo, and E. Escobar-Briones. 2020. ROV’s video recordings as a tool to estimate variation in megabenthic epifauna diversity and community composition in the Guaymas Basin. Frontiers in Marine Science, 7: 1–16. https://doi.org/10.3389/fmars.2020.00154
Boch, C.A., A. DeVogelaere, E. Burton, C.E. King, J.P. Lord, C. Lovera, S.Y. Litvin, L. Kuhnz, and J.P. Barry. 2019. Coral translocation as a method to restore impacted deep-sea coral communities. Frontiers in Marine Science, 6: 1–10. https://doi.org/10.3389/fmars.2019.00540
Kahn, A. S., J.P. Lord, K. Katija, and J.P. Barry. 2019. Respiration and water processing by glass sponges in Sur Ridge, a dense, deep-water coral and sponge habitat. Society of Integrative and Comparative Biology Annual Meeting, Tampa, January 3–7, 2019.
Litvin, S.Y., J. Barry, C. Lovera, C.A. Boch, E.J. Burton, A.P. DeVogelaere, D. Graves, T.P. Guilderson, A.S. Kahn, C. Kecy, C. King, L.A. Kuhnz, P. McGill, and A.D. Sherman. 2019. The Deep-Sea Coral Observatory (DiSCO) Project. 7th International Symposium on Deep-Sea Corals, Cartagena, July 29 to August 2, 2019.
Lord, J.P., E.M. Harper, and J.P. Barry. 2019. Ocean acidification may alter predator-prey relationships and weaken nonlethal interactions between gastropods and crabs. Marine Ecology Progress Series, 616: 83–94. https://doi.org/10.3354/meps12921
Maier, K. L., J.A. Gales, C.K. Paull, K.J. Rosenberger, P.J. Talling, S.M. Simmons, R. Gwiazda, M. McGann, M.J.B. Cartigny, E. Lundsten, K. Anderson, M.A. Clare, J. Xu, D. Parsons, J.P. Barry, M. Wolfson-Schwehr, N.M. Nieminski, and E.J. Sumner. 2019. Linking Direct Measurements of Turbidity Currents to Submarine Canyon-Floor Deposits. Frontiers in Earth Science, 7: 1–18. https://doi.org/10.3389/feart.2019.00144
Maier, K.L., K.J. Rosenberger, C.K. Paull, R. Gwiazda, J. Gales, T. Lorenson, J.P. Barry, P.J. Talling, M. McGann, J. Xu, E. Lundsten, K. Anderson, S.Y. Litvin, D.R. Parsons, M.A. Clare, S.M. Simmons, E.J. Sumner, and M.J.B. Cartigny. 2019. Sediment and organic carbon transport and deposition driven by internal tides along Monterey Canyon, offshore California. Deep Sea Research Part I: Oceanographic Research Papers, 153(103108). https://doi.org/10.1016/j.dsr.2019.103108
Omand, M., J. Sugar, K. Buesseler, C. Durkin, M. Estapa, I. Cetinic, E. D'Asaro, C. Lee, H.T. Rossby, A. Wang, A. Adams, K. Katija, and J.P. Barry. (2019). Upcoming EXPORTS technology: Trap cameras, Snocam, and Minions. NASA EXPORTS Science Meeting, Williamsburg, May 6–10, 2019. EXport Processes in the Ocean from Remote Sensing.
Stark, J. S., E.T. Peltzer, D.I. Kline, A.M. Queiros, E.T. Cox, K. Headley, J. Barry, F. Gazeau, J.W. Runcie, S. Widdicombe, M. Milnes, N.P. Roden, J. Black, S. Whiteside, G. Johnstone, J. Ingels, E. Shaw, L. Bodrossy, J.D. Gaitan-Espitia, W. Kirkwood, and J.P. Gattuso. 2019. Free Ocean CO2 Enrichment (FOCE) experiments: Scientific and technical recommendations for future in situ ocean acidification projects. Progress in Oceanography, 172: 89–107. https://doi.org/10.1016/j.pocean.2019.01.006
Gallo, N.D., L.A. Levin, M. Beckwith, and J.P. Barry. 2018. Home sweet suboxic home: Remarkable hypoxia tolerance in two demersal fish species in the Gulf of California. Ecology, 100(3): e02539. https://doi.org/10.1002/ecy.2539
McClain, C. R., C. Nunnally, A.S.A. Chapman, and J.P. Barry. 2018. Energetic increases lead to niche packing in deep-sea wood falls. Biology Letters, 14(9): 1–5. https://doi.org/10.1098/rsbl.2018.0294
Paull, C.K., P.J. Talling, K.L. Maier, D. Parsons, J. Xu, D.W. Caress, R. Gwiazda, E.M. Lundsten, K. Anderson, J.P. Barry, M. Chaffey, T. O'Reilly, K.J. Rosenberger, J.A. Gales, B. Kieft, M. McGann, S.M. Simmons, M. McCann, E.J. Sumner, M.A. Clare, and J. Cartigny. 2018. Powerful turbidity currents driven by dense basal layers. Nature Communications, 9: 1–9. https://doi.org/10.1038/s41467-018-06254-6
Barry, J.P., D. Graves, C. Kecy, C. Lovera, C. Okuda, C.A. Boch, and J.P. Lord. 2017. Chasing the future: How will ocean change affect marine life? Oceanography, 30: 60–71. https://doi.org/10.5670/oceanog.2017.424
Burton, E.J., L.A. Kuhnz, A.P. DeVogelaere, and J.P. Barry. 2017. Sur Ridge Field Guide: Monterey Bay National Marine Sanctuary. Marine Sanctuaries Conservation Series ONMS-17-10. U.S. Department of Commerce. National Oceanic and Atmospheric Administration, Office of National Marine Sanctuaries, Silver Spring, MD: 122.
Hamilton, S.L., C.A. Logan, H.W. Fennie, S.M. Sogard, J.P. Barry, A.D. Makukhov, L.R. Tobosa, K. Boyer, C.F. Lovera, and G. Bernardi. 2017. Species-specific responses of juvenile rockfish to elevated pCO2: From behavior to genomics. PLoS One, 12: e0169670. http://dx.doi.org/10.1371/journal.pone.0169670
Lord, J.P., J.P. Barry, and D. Graves. 2017. Impact of climate change on direct and indirect species interactions. Marine Ecology Progress Series, 571: 1–11. http://dx.doi.org/10.3354/meps12148
Lord, J.P., and J.P. Barry. 2017. Juvenile mussel and abalone predation by the lined shore crab Pachygrapsus crassipes. Journal of Shellfish Research, 36: 209–213. http://dx.doi.org/10.2983/035.036.0122
McClain, C.R., J.P. Barry, and T.J. Webb. 2017. Increased Energy Differentially Increases Richness and Abundance of Optimal Body Sizes in Deep-Sea Wood-Falls. Ecology, 99(1): 184–195. https://www.jstor.org/stable/26624024
Thistle, David, L. Sedlacek, K.R. Carman, and J.P. Barry. 2017. Influence of habitat heterogeneity on the community structure of deep-sea harpacticoid communities from a canyon and an escarpment site on the continental rise off California. Deep Sea Research Part I: Oceanographic Research Papers, 123: 56–61. http://dx.doi.org/10.1016/j.dsr.2017.03.005
Webb, Thomas J., J.P. Barry, and C.R. McClain. 2017. Abundance-occupancy relationships in deep sea wood fall communities. Ecography, 40(11): 1339–1347. http://dx.doi.org/10.1111/ecog.02618
Barry, J.P., J.R. Taylor, L.A. Kuhnz, and A.P. De Vogelaere. 2016. Symbiosis between the holothurian Scotoplanes sp. A and the lithodid crab Neolithodes diomedeae on a featureless bathyal sediment plain. Marine Ecology, 38: e12396. http://dx.doi.org/10.1111/maec.12396
Gaylord, B., K.J. Kroeker, J.M. Sunday, K.M. Anderson, J.P. Barry, N.E. Brown, S.D. Connell, S. Dupont, K.E. Fabricius, J.M. Hall-Spencer, T. Klinger, M. Milazzo, P.L. Munday, B.D. Russell, E. Sanford, S.J. Schreiber, V. Thiyagarajan, M.L.H. Vaughan, S. Widdicombe, and C.D.G. Harley. 2016. The reality of ocean acidification: Ocean acidification through the lens of ecological theory. Washington Journal of Environmental Law & Policy, Environmental Law Symposium on Ocean Acidification, 6: 252–284. https://digitalcommons.law.uw.edu/wjelp/vol6/iss2/4/
Judge, J., and J.P. Barry. 2016. Macroinvertebrate community assembly on deep-sea wood falls in Monterey Bay is strongly influenced by wood type. Ecology, 97: 3031–3043. http://dx.doi.org/10.1002/ecy.1546
Kim, T.W., and J.P. Barry. 2016. Boldness in a deep sea hermit crab to simulated tactile predator attacks is unaffected by ocean acidification. Ocean Science Journal, 51: 381–386. http://dx.doi.org/10.1007/s12601-016-0034-8
Martin, E.J., D.W. Caress, H. Thomas, B. Hobson, R. Henthorn, M. Risi, C.K. Paull, J.P. Barry, and G. Troni. 2016. Enabling new techniques in environmental assessment through multi-sensor hydrography. Marine Technology Society / Institute of Electrical and Electronics Engineers Oceans Conference, 2016: 1–7. http://dx.doi.org/10.1109/OCEANS.2016.7761487
McClain, C.R., J.P. Barry, D. Eernisse, T. Horton, J. Judge, K. Kakui, C. Mah, and A. Waren 2016. Multiple processes generate productivity–diversity relationships in experimental wood-fall communities. Ecology, 97: 885–898. http://dx.doi.org/10.1890/15-1669.1
Sunday, J.M., K.E. Fabricius, K.J. Kroeker, K.M. Anderson, N.E. Brown, J.P. Barry, S.D. Connell, S. Dupont, B. Gaylord, J.M. Hall-Spencer, T. Klinger, M. Milazzo, P.L. Munday, B.D. Russell, E. Sanford, V. Thiyagarajan, M.L.H. Vaughan, S. Widdicombe, and C.D.G. Harley. 2016. Ocean acidification can mediate biodiversity shifts by changing biogenic habitat. Nature Climate Change, 7: 81–85. http://dx.doi.org/10.1038/nclimate3161
Gaylord, B., K.J. Kroeker, J.M. Sunday, K.M. Anderson, J.P. Barry, N.E. Brown, S.D. Connell, S. Dupont, K.E. Fabricius, J.M. Hall-Spencer, T. Klinger, M. Milazzo, P.L. Munday, B.D. Russell, E. Sanford, S.J. Schreiber, V. Thiyagarajan, M.L.H. Vaughan, S. Widdicombe, and C.D.G. Harley. 2015. Ocean acidification through the lens of ecological theory. Ecology, 96: 3–15. http://dx.doi.org/10.1890/14-0802.1
Gehlen, M., R. Séférian, D.O.B. Jones, T. Roy, R. Roth, J. Barry, L. Bopp, S.C. Doney, J.P. Dunne, C. Heinze, F. Joos, J.C. Orr, L. Resplandy, J. Segschneider, and J. Tjiputra. 2015. Projected pH reductions by 2100 might put deep North Atlantic biodiversity at risk. Biogeosciences, 11: 6955–6967. http://dx.doi.org/10.5194/bg-11-6955-2014
Kim, T.W., J. Taylor, C. Lovera, and J.P. Barry. 2015. CO2-driven decrease in pH disrupts olfactory behaviour and increases individual variation in deep-sea hermit crabs. ICES Journal of Marine Science, 73(3): 613–619. http://dx.doi.org/10.1093/icesjms/fsv019
Kirkwood, W.J., P.M. Walz, E.T. Peltzer, J.P. Barry, R.A. Herlien, K.L. Headley, C. Kecy, G.I. Matsumoto, T. Maughan, T.C. O’Reilly, K.A. Salamy, F. Shane, and P.G. Brewer. 2015. Design, construction, and operation of an actively controlled deep-sea CO2 enrichment experiment using a cabled observatory system. Deep Sea Research Part I: Oceanographic Research Papers, 97: 1–9. http://dx.doi.org/10.1016/j.dsr.2014.11.005
Kuhnz, L.A., K. Buck, C. Lovera, P.J. Whaling, and J.P. Barry. Potential impacts of the Monterey Accelerated Research System (MARS) Cable on the seabed and benthic faunal assemblages. Moss Landing: Monterey Bay Aquarium Research Institute, 2015. https://tethys.pnnl.gov/publications/potential-impacts-monterey-accelerated-research-system-mars-cable-seabed-benthic
Barry, J.P., C. Lovera, K.R. Buck, E.T. Peltzer, J.R. Taylor, P. Walz, P.J. Whaling, and P.G. Brewer. 2014. Use of a Free Ocean CO2 Enrichment (FOCE) system to evaluate the effects of ocean acidification on the foraging behavior of deep-sea urchin. Environmental Science & Technology, 48: 9890–9897. http://dx.doi.org/10.1021/es501603r
Gattuso, J.P., W. Kirkwood, J.P. Barry, E. Cox, F. Gazeau, L. Hansson, I. Hendricks, D.I. Kline, P. Mahacek, S. Martin, P. McElhany, E.T. Peltzer, J. Reeve, D. Roberts, V. Saderne, K. Tait, S. Widdicombe, and P.G. Brewer. 2014. Free-ocean CO2 enrichment (FOCE) systems: Present status and future developments. Biogeosciences, 11: 4057–4075. http://dx.doi.org/10.5194/bg-11-4057-2014
McClain, C.R., and J. Barry. 2014. Beta-diversity on deep-sea wood falls reflects gradients in energy availability. Biology Letters, 10: 1–4. http://dx.doi.org/10.1098/rsbl.2014.0129
Taylor, J.R., A.P. DeVogelaere, E.J. Burton, O. Frey, L. Lundsten, L.A. Kuhnz, P.J. Whaling, C. Lovera, K.R. Buck, and J.P. Barry. 2014. Deep-sea faunal communities associated with a lost intermodal shipping container in the Monterey Bay National Marine Sanctuary, CA. Marine Pollution Bulletin, 83: 92–106. http://dx.doi.org/10.1016/j.marpolbul.2014.04.014
Taylor, J.R., C. Lovera, P.J. Whaling, K.R. Buck, E.F. Pane, and J.P. Barry. 2014. Physiological effects of environmental acidification in the deep-sea urchin Strongylocentrotus fragilis. Biogeosciences, 11: 1413–1423. https://doi.org/10.5194/bg-11-1413-2014
Walz, K.R., D.A. Clague, J.P. Barry, and R.C. Vrijenhoek. 2014. First records and range extensions for two Acesta clam species (Bivalvia: Limidae) in the Gulf of California, Mexico. Marine Biodiversity Records, 7: e60. http://dx.doi.org/10.1017/S1755267214000165
Barry, J.P., K.R. Buck, C. Lovera, P.G. Brewer, B.A. Seibel, J.C. Drazen, M.N. Tamburri, P.J. Whaling, L. Kuhnz, and E.F. Pane. 2013. The response of abyssal organisms to low pH conditions during a series of CO2-release experiments simulating deep-sea carbon sequestration. Deep Sea Research II, 92: 249–260. http://dx.doi.org/10.1016/j.dsr2.2013.03.037
Buck, K.R., J.P. Barry, and S.J. Hallam. 2013. Thioploca spp. sheaths as niches for bacterial and protistan assemblages. Marine Ecology, 35: 395–400. http://dx.doi.org/10.1111/maec.12076
Kecy, C.D., E.T. Peltzer, P.M. Walz, K. Headley, R.A. Herlien, T. Maughan, G.I. Matsumoto, T.C. O'Reilly, K.A. Salamy, F. Shane, C. Lovera, J. Scholfield, W. Kirkwood, J.P. Barry, and P.G. Brewer. 2013. Open source instrumentation nodes for the greater oceanographic community. Proceedings of Marine Technology Society/Institute for Electrical and Electronics Engineers Oceans 2013, San Diego, 23–26 September 2013.
Kim, T.W., J.P. Barry, and F. Micheli. 2013. The effects of intermittent exposure to low pH and oxygen conditions on survival and growth of juvenile red abalone. Biogeosciences Discussions, 10: 3559–3576. http://dx.doi.org/10.5194/bgd-10-3559-2013
Sedlacek, L., D. Thistle, G. Fernandez-Leborans, K.R. Carman, and J.P. Barry. 2013. First report of ciliate (Protozoa) epibionts on deep-sea harpacticoid copepods. Deep Sea Research II, 92: 165–171. http://dx.doi.org/10.1016/j.dsr2.2013.01.033
Shane, F.F., K. Headley, P. Walz, C. Kecy, G.I. Matsumoto, R.A. Herlien, E.T. Peltzer, J. Scholfield, K.A. Salamy, T. Maughan, T.C. O'Reilly, C. Lovera, W.J. Kirkwood, J. Barry, and P.G. Brewer. 2013. xFOCE: An open source, multi-disciplinary resource for in-situ ocean acidification research. Proceedings of Marine Technology Society/Institute of Electrical and Electronics Engineers Oceans 2013, San Diego, 23–27 September 2013.
Tang, Q., C.T.A. Chen, K. Yu, M. Dai, M. Zhao, C. Ke, G.T.F. Wong, F. Chai, G. Wei, L. Zhou, L. Chen, J. Song, J.P. Barry, Y. Wu, and K. Gao. 2013. The effects of ocean acidification on marine organisms and ecosystem. Chinese Science Bulletin, 58: 1307–1314.
Taylor, J.R., C. Lovera, P.J. Whaling, K.R. Buck, E.F. Pane, and J.P. Barry. 2013. Physiological compensation for environmental acidification is limited in the deep-sea urchin Strongylocentrotus fragilis. Biogeosciences Discussions, 10: 8313–8341. http://dx.doi.org/10.5194/bgd-10-8313-2013
Buck, K.R., N.N. Rabalais, J.M. Bernhard, and J.P. Barry. 2012. Living assemblages from the ‘dead zone’ and naturally occurring hypoxic zones. Anoxia: Evidence for Eukaryote Survival and Paleontological Strategies, COLE 21: 343–352. http://dx.doi.org/10.1007/978-94-007-1896-8_18
Curtis, B.A., G. Tanifuji, F. Burki, A. Gruber, M. Irimia, S. Maruyama, M.C. Arias, S.G. Ball, G.H. Gile, Y. Hirakawa, J.F. Hopkins, A. Kuo, S.A. Rensing, J. Schmutz, A. Symeonidi, M. Elias, J.M. Eveleigh, E.K. Herman, M.J. Klute, T. Nakayama, M. Obornik, A. Reyes-Prieto, E.V. Armbrust, S.J. Aves, R.G. Beiko, P. Coutinho, J.B. Dacks, D.G. Durnford, N.M. Fast, B.R. Green, C.J. Grisdale, F. Hempel, B. Henrissat, M.P. Höppner, K.I. Ishida, E. Kim, L. Kořený, P.G. Kroth, Y. Liu, S.B. Malik, U.G. Maier, D. McRose, T. Mock, J.A.D. Neilson, N.T. Onodera, A.M. Poole, E.J. Pritham, T.A. Richards, G. Rocap, S.W. Roy, C. Sarai, S. Schaack, S. Shirato, C.H. Slamovits, D.F. Spencer, S. Suzuki, A.Z. Worden, S. Zauner, K. Barry, C. Bell, A.K. Bharti, J.A. Crow, J. Grimwood, R. Kramer, E. Lindquist, S. Lucas, A. Salamov, G.I. McFadden, C.E. Lane, P.J. Keeling, M.W. Gray, I.V. Grigoriev, and J.M. Archibald. 2012. Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs. Nature, 492: 59–65. http://dx.doi.org/10.1038/nature11681
Doney, S.C., M. Ruckelshaus, J.E. Duffy, J.P. Barry, F. Chan, C.A. English, H.M. Galindo, J.M. Grebmeier, A.B. Hollowed, N. Knowlton, J. Polovina, N.N. Rabalais, W.J. Sydeman, and L.D. Talley. 2012. Climate change impacts on marine ecosystems. Annual Review of Marine Science, 4: 11–37. http://dx.doi.org/10.1146/annurev-marine-041911-111611
Xu, J.P., J.P. Barry, and C.K. Paull. 2012. Small-scale turbidity currents in a big submarine canyon. Geology, 41: 143–146. http://dx.doi.org/10.1130/G33727.1
Barry, J.P., S. Widdicombe, and J.M. Hall-Spencer. Effects of ocean acidification on marine biodiversity and ecosystem function. In Ocean Acidification, edited by J.P. Gattuso, L. Hansson, 192–209. Oxford, UK, Oxford University Press: 2011.
Johnson, K.S., J.P. Barry, L.J. Coletti, S.E. Fitzwater, H.W. Jannasch, and C.F. Love. 2011. Nitrate and oxygen flux across the sediment-water interface observed by eddy correlation measurements on the open continental shelf. Limnology and Oceanography Methods, 9: 543–553. http://dx.doi.org/10.4319/lom.2011.9.543
Kuhnz, L.A., J.P. Barry, K. Buck, C. Lovera, and P.J. Whaling. Potential impacts of the Monterey Accelerated Research System (MARS) on the seabed and benthic faunal assemblages. Moss Landing, California: Monterey Bay Aquarium Research Institute, 2011.
Levin, L.A., M.C. Gambi, J.P. Barry, A. Genin, and S. Thrush. 2011. The Dayton legacy: baselines, benchmarks, climate, disturbance, and proof. Marine Ecology, 32: 261–265. http://dx.doi.org/10.1111/j.1439-0485.2011.00473.x
McClain, C.R., J.C. Nekola, L. Kuhnz, and J.P. Barry. 2011. Local-scale faunal turnover on the deep Pacific seafloor. Marine Ecology Progress Series, 422: 193–200. http://dx.doi.org/10.3354/meps08924
Barry, J., et al. 2010. "Frequently asked questions about ocean acidification." U.S. Ocean Carbon and Biogeochemistry, European Project on Ocean Acidification, 19 March 2010.
Barry, J., L. Kuhnz, K. Buck, C. Lovera, and P.J. Whaling. 2010. Potential impacts of the MARS cable on the seabed and benthic faunal assemblages. Report to: Monterey Bay National Marine Sanctuary.
Barry, J.P. 2010. Marine organisms and ecosystems in a high CO2 ocean, and an overview of recommendations from the NRC committee report on development of an integrated science strategy for ocean acidification monitoring, research, and impacts assessment. Daily Digest: U.S. Senate Hearing on the Environmental and Economic impacts of Ocean Acidification, April 22, 2010: D423.
Barry, J.P., J.M. Hall-Spencer, and T. Tyrrell. In situ perturbation experiments: Natural venting sites, spatial/temporal gradients in ocean pH, manipulative in situ pCO2 perturbations. Best Practices for Ocean Acidification Research, edited by U. Riebesell, 123–136. Luxembourg: Publications Office of the European Union, 2010.
Barry, J.P., T. Tyrrell, L. Hansson, G.K. Plattner, and J.P. Gattuso. Atmospheric CO2 targets for ocean acidification perturbation experiments. Best Practices for Ocean Acidification, edited by U. Riebesell, 53–63. Luxembourg: Publications Office of the European Union, 2010.
Fleeger, J.W., D.S. Johnson, K.R. Carman, P.B. Weisenhorn, A. Gabriele, D. Thistle, and J.P. Barry. 2010. The response of nematodes to deep-sea CO2 sequestration: A quantile regression approach. Deep-Sea Research Part I, 57: 696–707. http://dx.doi.org/10.1016/j.dsr.2010.03.003
Hofmann, G.E., J.P. Barry, P.J. Edmunds, R.D. Gates, D.A. Hutchins, T. Klinger, and M.A. Sewell. 2010. The effects of ocean acidification on calcifying organisms in marine ecosystems: An organism to ecosystem perspective. Annual Review of Ecology, Evolution and Systematics, 41: 127–147. http://dx.doi.org/10.1146/annurev.ecolsys.110308.120227
McClain, C.R., and J.P. Barry. 2010. Habitat heterogeneity, disturbance, and productivity work in concert to regulate biodiversity in deep submarine canyons. Ecology, 91: 964–976.
McClain, C.R., L. Lundsten, J.P. Barry, and A. DeVogelaere. 2010. Assemblage structure, but not diversity or density, change with depth on a northeast Pacific seamount. Marine Ecology, 31 (Suppl.1): 1–12. http://dx.doi.org/10.1111/j.1439-0485.2010.00367.x
National Research Council (J.P. Barry was a member of the committee and co-author of the report). Ocean Acidification: A national strategy to meet the challenges of a changing ocean. Washington, D.C., National Academies Press: 2010. https://doi.org/10.17226/12904
Paull, C.K., B. Schlining, W. Ussler III, E. Lundsten, J.P. Barry, D. Caress, J. Johnson, and M. McGann. 2010. Submarine mass transport within Monterey Canyon: Benthic disturbance controls on the distribution of chemosynthetic biological communities. Submarine mass movements and their consequences, Advances in natural and technological hazards research, 28: 229–246.
Paull, C.K., W. Ussler III, D.W. Caress, E. Lundsten, J. Barry, J.A. Covault, K.L. Maier, J. Xu, and S. Augenstein. 2010. Origins of large crescent-shaped bedforms within the axial channel of Monterey Canyon, offshore California. Geosphere, 6: 755–774. http://dx.doi.org/10.1130/GES00527.1
Bernard, J.M., J.P. Barry, K.R. Buck, and V.R. Starczak. 2009. Impact of intentionally injected carbon dioxide hydrate on deep-sea benthic foraminiferal survival. Global Change Biology, 15: 2078–2088. http://dx.doi.org/10.1111/j.1365-2486.2008.01822.x
Kirkwood, W., E.T. Peltzer, J. Barry, and P. Brewer. 2009. Recent advances in FOCE technology: Building a better sea floor CO2 enrichment experiment. Proceedings of the Eleventh Pacific Science Inter-Congress of the Pacific Science Association.
Lundsten, L., C.R. McClain, J.P. Barry, G.M. Cailliet, D. Clague, and A. DeVogelaere. 2009. Ichthyofauna on three seamounts off southern and central California, USA. Marine Ecology Progress Series, 389: 223–232. http://dx.doi.org/10.3354/meps08181
Lundsten, L., J.P. Barry, G.M. Caillet, D.A. Clague, A. DeVogelaere, and J.B. Geller. 2009. Benthic invertebrate communities on three seamounts off southern and central California, USA. Marine Ecology Progress Series, 374: 23–32. http://dx.doi.org/10.3354/meps07745
McClain, C.R., L. Lundsten, M. Ream, J.P. Barry, and A. DeVogelaere. 2009. Endemicity, Biogeograhy, Composition, and Community Structure On a Northeast Pacific Seamount. PLoS ONE, 4: e4141. http://dx.doi.org/10.1371/journal.pone.0004141
Sedlacek, L., D. Thistle, K.R. Carman, J.W. Fleeger, and J.P. Barry. 2009. Effects of carbon dioxide on deep-sea harpacticoids revisited. Deep-Sea Research Part I, 56: 1018–1025. http://dx.doi.org/10.1016/j.dsr.2009.01.004
Barry, J.P., C. Lovera, C. Okuda, E. Nelson, and E. Pane. 2008. A gas-controlled aquarium system for ocean acidification studies. Proceedings of the Marine Technology Society / Institute of Electrical and Electronics Engineers Kobe Techno Ocean Meeting.
Brewer, P.G., and J.P. Barry. 2008. The other CO2 problem. Scientific American: Special Edition Earth 3.0: 22–23.
Pane, E.F., M. Grosell, and J.P. Barry. 2008. Hypercapnic tolerance of deep- and shallow-living crabs. Aquatic Biology, 4: 23–32.
Barry, J.P., and J.C. Drazen. 2007. Response of deep-sea scavengers to mild hypercapnia and the odor from a dead grenadier. Marine Ecology Progress Series, 350: 193–207.
Barry, J.P., P.J. Whaling, and R.K. Kochevar. 2007. Growth, production, and mortality of the chemosynthetic vesicomyid bivalve, Calyptogena kilmeri, from cold seeps off central California. Marine Ecology, 28: 169–182. http://dx.doi.org/10.1111/j.1439-0485.2007.00119.x
Caldeira, K, D. Archer, J.P. Barry, R. Bellerby, P.G. Brewer, L. Cao, A.G. Dickson, S.C. Doney, H. Elderfield, V. Fabry, R.A. Freely, J.P. Gattuso, O. Hoegh-Guldberg, P.M. Haugan, J.A. Kleypas, C. Langdon, J.C. Orr, A. Ridgwell, C.L. Sabine, B.A. Seibel, C. Turley, A. Watson, and R. Zeebe. 2007. Comment on "Modern-age buildup of CO2 and its effects on seawater acidity and salinity". Geophysical Research Letters, 34: 1–3. http://dx.doi.org/10.1029/2006GL027288
Fujikura, K., K. Amaki, J.P. Barry, Y. Fujiwara, Y. Furushima, R. Iwase, H. Yamamoto, and T. Maruyama. 2007. Direct observations of spawning behavior and synchrony in Calyptogena clams using an observatory and an estimate of fecundity. Marine Ecology Progress Series, 333: 185–193.
Grebmeier, J.M., and J.P. Barry. 2007. Benthic processes in polar polynyas. Polynyas: Windows into polar oceans, Elsevier Oceanography Series: 262–290.
Levin, L.A., J.P. Barry, H. Felbeck, C.R. Smith, and C.R. Young. 2007. Advances in vent, seep, whale-, and wood-fall biology. Marine Ecology, 28: 1–2. http://dx.doi.org/10.1111/j.1439-0485.2007.00153.x
Pane, E.F., and J.P. Barry. 2007. Inefficient acid-base regulation in the deep-sea decapod crab (Chionoecetes tanneri) during short-term hypercapnia. Marine Ecology Progress Series, 334: 1–9.
Thistle, D., L. Sedlacek, K.R. Carman, J.W. Fleeger, and J.P. Barry. 2007. Emergence in the deep-sea: Evidence from harpacticoid copepods. Deep-Sea Research Part I, 54: 1008–1014. http://dx.doi.org/10.1016/j.dsr.2007.03.002
Thistle, D., L. Sedlacek, K.R. Carman, J.W. Fleeger, P.G. Brewer, and J.P. Barry. 2007. Exposure to carbon dioxide-rich seawater is stressful for deep-sea species: An in-situ, behavioral study. Marine Ecology Progress Series, 340: 9–16. http://dx.doi.org/10.3354/meps340009
Fleeger, J.W., K.R. Carman, P.B. Weisenhorn, H. Sofranko, T. Marshall, D. Thistle, and J. Barry. 2006. Simulated sequestration of anthropogenic carbon dioxide at a deep-sea site: Effects on nematode abundance and biovolume. Deep-Sea Research Part I, 53: 1135–1147. http://dx.doi.org/10.1016/j.dsr.2006.05.007
Kogan, I., C.K. Paull, L. Kuhnz, E.J. Burton, S. Von Thun, H.G. Greene, and J. Barry. 2006. ATOC/Pioneer Seamount cable after 8 years on the seafloor: Observations and environmental impact. Continental Shelf Research, 26: 771–787. http://dx.doi.org/10.1016/j.csr.2006.01.010
Stein, D.L., J.C. Drazen, K.L. Schlining, J. Barry, and L. Kuhnz. 2006. Snailfishes of Monterey Canyon: Video, photographic, and morphological observations. Journal of Fish Biology, 69: 970–986.
Thistle, D., L. Sedlacek, K.R. Carman, J.W. Fleeger, P.G. Brewer, and J. Barry. 2006. Simulated sequestration of anthropogenic carbon dioxide at a deep-sea site: Effects on harpacticoid-copepod species. Journal of Experimental Marine Biology and Ecology, 330: 141–158.
Barry, J.P., K.R. Buck, C. Lovera, L. Kuhnz, and P.J. Whaling. 2005. Utility of deep-sea CO2 release experiments in understanding the biology of a high CO2 ocean: Effects of hypercapnia on deep-sea meiofauna. Journal of Geophysical Research, Oceans, 110: C09S12. http://dx.doi.org/10.1029/2004JC002629
Drazen, J.C., L.E. Bird, and J.P. Barry. 2005. Development of a hyperbaric trap-respirometer for the capture and maintenance of live deep-sea organisms. Limnology and Oceanography: Methods, 3: 488–498.
Kirkwood, W., D. Graves, M. Conway, D. Pargett, J. Scholfield, P. Walz, R.M. Dunk, E.T. Peltzer, J. Barry, and P.G. Brewer. 2005. Engineering development of the free ocean CO2 enrichment (FOCE) experiment. Proceedings of the Marine Technology Society / Institute of Electrical and Electronics Engineers Oceans Conference.
Paull, C.K., W. Ussler III, H.G. Greene, J. Barry, and R. Keaten. 2005. Bioerosion by chemosynthetic biological communities on holocene submarine slide scars. Geo-Marine Letters, 25: 11–19. http://dx.doi.org/10.1007/s00367-004-0184-z
Paull, C.K., W. Ussler, III, J. Barry, H.G. Greene, and R. Keaten. 2005. Bioerosion by chemosynthetic biological communities on Holocene slide scars. Geo-Marine Letters, 25: 11–19. http://dx.doi.org/10.1007/s00367-004-0184-z