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2024

Aguilar Pérez, M. I., P. A. Zapata-Ramírez, and A. Micallef. 2024. A review of cold seeps in the Western Atlantic, focusing on Colombia and the Caribbean. Frontiers in Marine Science, 11(1430377). https://doi.org/10.3389/fmars.2024.1430377

Ahuja, N., X. Cao, D. T. Schultz, N. Picciani, A. Lord, S. Shao, K. Jia, D. R. Burdick, S. H. Haddock, Y. Li, and C. W. Dunn. 2024. Giants among Cnidaria: Large Nuclear Genomes and Rearranged Mitochondrial Genomes in Siphonophores. Genome Biology and Evolution, 16(3). https://doi.org/10.1093/gbe/evae048

Barnard, K., J. Daniels, P. L. Roberts, E. C. Orenstein, I. Masmitja, J. Takahashi, B. Woodward, and K. Katija. 2024. DeepSTARia: Enabling autonomous, targeted observations of ocean life in the deep sea. Frontiers in Marine Science, 11(1357879). https://doi.org/10.3389/fmars.2024.1357879

Beckmann, L.M., B.A. Vincent, A. De León, J. Masterman, E.S. Lau, and S.H. Haddock. 2024. Fluorescence patterns and diversity of hydrozoans from Bocas del Toro, Panama. Ciencias Marinas, 50. https://doi.org/10.7773/cm.y2024.3409

Benoit-Bird, K. J. 2024. Resource Patchiness as a Resolution to the Food Paradox in the Sea. The American Naturalist, 203(1): 1-13. https://doi.org/10.1086/727473

Bif, M.B., J.S. Long, K.S. Johnson. 2024. Seasonality modulates particulate organic carbon dynamics in mid-latitudes of South Pacific and South Atlantic Oceans. Journal of Marine Systems, 241(103916). https://doi.org/10.1016/j.jmarsys.2023.103916

Burns, J.A., J. Daniels, K.P. Becker, D. Casagrande, P. Roberts, E. Orenstein, D.M. Vogt, Z.E. Teoh, R. Wood, A.H. Yin, B. Genot, R.J. Wood, K. Katija, B.T. Phillips, and D.F. Gruber. 2024. Transcriptome sequencing of seven deep marine invertebrates. Scientific Data, 11(1): 1–6. https://doi.org/10.1038/s41597-024-03533-4

Burns, J.A., K. P. Becker, D. Casagrande, J. Daniels, P. Roberts, E. Orenstein, D. M. Vogt, Z. E. Teoh, R. Wood, A.H. Yin, B. Genot, D.F. Gruber, K. Katija, R.J. Wood, B.T. Phillips. 2024. An in situ digital synthesis strategy for the discovery and description of ocean life. Science Advances, 10(eadj4960). doi.org/10.1126/sciadv.adj4960

Carranza, M.M., M.C. Long, A. Di Luca, A.J. Fassbender, K.S. Johnson, Y. Takeshita, P. Mongue, and K.E. Turner. 2024. Extratropical storms induce carbon outgassing over the Southern Ocean. Npj Climate and Atmospheric Science, 7(1): 1–16. https://doi.org/10.1038/s41612-024-00657-7

Carter, B. R., J. D. Sharp, A. G. Dickson, M. Álvarez, M. B. Fong, M. I. García-Ibáñez, R. J. Woosley, Y. Takeshita, L. Barbero, R. H. Byrne, J. Cai, M. Chierici, S. L. Clegg, R. A. Easley, A. J. Fassbender, K. L. Fleger,  X. Li, M. Martín-Mayor, K. M. Schockman, and Z.A. Wang. 2024. Uncertainty sources for measurable ocean carbonate chemistry variables. Limnology and Oceanography, 69(1):1–21. https://doi.org/10.1002/lno.12477

Claes, J. M., S. H. Haddock, C. Coubris, and J. Mallefet. 2024. Systematic Distribution of Bioluminescence in Marine Animals: A Species-Level Inventory. Life, 14(4). https://doi.org/10.3390/life14040432

De Biase, M., F. Chidichimo, A. T. Thomas, and A. Micallef. 2024. Limited role of present-day onshore freshwater recharge in the emplacement of offshore freshened groundwater in the Canterbury Bight, New Zealand. New Zealand Journal of Geology and Geophysics, 1–15. https://doi.org/10.1080/00288306.2024.2387642

DeLeo D.M., M. Bessho-Uehara, S.H.D. Haddock, C.S. McFadden, and A.M. Quattrini. 2024. Evolution of bioluminescence in Anthozoa with emphasis on Octocorallia. Proceedings of the Royal Society B, 291(2021): 0232626. http://doi.org/10.1098/rspb.2023.2626

Dodson, S., W.K. Oestreich, M.S. Savoca, E.L. Hazen, S.J. Bograd, J.P. Ryan, J. Fiechter, and B. Abrahms. 2024. Long-distance communication can enable collective migration in a dynamic seascape. Scientific Reports, 14(1): 1–12. https://doi.org/10.1038/s41598-024-65827-2

Estapa, M. L., C. A. Durkin, W. H. Slade, C. L. Huffard, S. P. O'Neill, and M. M. Omand. 2024. A new, global optical sediment trap calibration. Limnology and Oceanography: Methods, 22(2): 77–92. https://doi.org/10.1002/lom3.10592

Gaynor, K.M., B. Abrahms, K.R. Manlove, W.K. Oestreich, and J.A. Smith. 2024. Anthropogenic impacts at the interface of animal spatial and social behaviour. Philosophical Transactions of the Royal Society B, 379(1912). http://doi.org/10.1098/rstb.2022.0527e

Hetherington, E.D., H.G. Close, S.H.D. Haddock, A. Damian-Serrano, C.W. Dunn, N.J. Wallsgrove, S.C. Doherty, and A.C. Choy. 2024. Vertical trophic structure and niche partitioning of gelatinous predators in a pelagic food web: Insights from stable isotopes of siphonophores. Limnology and Oceanography, 69(4): 902–919. https://doi.org/10.1002/lno.12536

Hosia, A., L. Martell, M. K. Mańko, S. H. Haddock, D. Haberlin, and G. M. Mapstone. 2024. Unexpected diversity and novel lineages in the cosmopolitan genus Nanomia (Cnidaria: Siphonophorae: Physonectae). Frontiers in Marine Science, 11(1421514). https://doi.org/10.3389/fmars.2024.1421514

Jessop, A.-L., Z.M. Bagheri, J.C. Partridge, K.J. Osborn, and J.M. Hemmi. 2024. Functional differences between the extraordinary eyes of deep-sea hyperiid amphipods. Proceedings of the Royal Society B, 291(2023): 29120240239. https://doi.org/10.1098/rspb.2024.0239

Julià-Miralles, M., I. Yarbuh, R.M. Spelz, R. Negrete-Aranda, J. Contreras, J.M. Fletcher, A. González-Fernández, R. Zierenberg, D.W. Caress. 2024. Strain localization instabilities and the genesis of multiple axes of seafloor spreading in the Carmen basin, southern Gulf of California. International Journal of Earth Sciences, 113:1265–1283. https://doi.org/10.1007/s00531-024-02426-6

Kelly, R.P., D.M. Lodge, K.N. Lee, S. Theroux, A.J. Sepulveda, C.A. Scholin, J.M. Craine, E.A. Allan, K.M. Nichols, K.M. Parsons, K.D. Goodwin, Z. Gold, F.P. Chavez, R.T. Noble, C.L. Abbott, M.R. Baerwald, A.M. Naaum, P.M. Thielen, A.L. Simons, C.L. Jerde, J.J. Duda, M.E. Hunter, J.A. Hagan, R.S. Meyer, J.A. Steele, M.Y. Stoeckle, H.M. Bik, C.P. Meyer, E. Stein, K.E. James, A.C. Thomas, E. Demir-Hilton, M.A. Timmers, J.F. Griffith, M.J. Weise, and S.B. Weisberg. 2024. Toward a national eDNA strategy for the United States. Environmental DNA, 6(1): e432. https://doi.org/10.1002/edn3.432

Laget, M., L. Drago, T. Panaïotis, R. Kiko, L. Stemmann, A. Rogge, N. Llopis-Monferrer, A. Leynaert, J.-O. Irisson, and T. Biard. 2024. Global census of the significance of giant mesopelagic protists to the marine carbon and silicon cycles. Nature Communications, 15(1): 1–11. https://doi.org/10.1038/s41467-024-47651-4

Lønborg, C., C. Carreira, S. Abril, S. Agustí, …, M.B. Bif, ..., X.A. Álvarez-Salgado. 2024. A Global dataset of dissolved organic matter (DOM) measurements in coastal waters (CoastDOM v1). Earth System Science Data, 16(2). DOI: 10.5194/essd-2023-348

Lundsten, E., C.K. Paull, R. Gwiazda, S. Dobbs, D.W. Caress, L.A. Kuhnz, M. Walton, N. Nieminski, M. McGann, T. Lorenson, G. Cochrane, and J. Addison. 2024. Pockmarks offshore Big Sur, California provide evidence for recurrent, regional, and unconfined sediment gravity flows. Journal of Geophysical Research: Earth Surface, 129(5): e2023JF007374. https://doi.org/10.1029/2023JF007374

Micallef, A., J. Geldmacher, S.F. Watt, G.M. Ferrante, J. Ford, E. Lodolo, D. Civile, A.G. Hodgetts, M. Felgendreher, J.G. Licari, F. Hauff, S. Hauff, J. Lang, K. Meredew, M. Portnyagin, C. Timm, C. Berndt, D. Cavallaro, F. Muccini, and K. Hoernle. 2024. Submarine volcanism in the Sicilian Channel revisited. Marine Geology, 474(107342). https://doi.org/10.1016/j.margeo.2024.107342

Muñoz, B. and G. Troni. 2024. Learning the Ego-Motion of an Underwater Imaging Sonar: A Comparative Experimental Evaluation of Novel CNN and RCNN Approaches. IEEE Robotics and Automation Letters, 9(3): 2072-2079. doi: 10.1109/LRA.2024.3352357

Oestreich, W. K., R. Y. Oliver, M. S. Chapman, M. C. Go, and M. F. McKenna. 2024. Listening to animal behavior to understand changing ecosystems. Trends in Ecology & Evolution, 39(10):961-973. https://doi.org/10.1016/j.tree.2024.06.007

Oestreich, W.K., K.J. Benoit-Bird, B. Abrahms, T. Margolina, J.E. Joseph, Y. Zhang, C.A. Rueda, and J.P. Ryan. 2024. Evidence for seasonal migration by a cryptic top predator of the deep sea. Movement Ecology, 12(65):1-14. https://doi.org/10.1186/s40462-024-00500-x

Paull, C. K., J. K. Hong, D. W. Caress, R. Gwiazda, H. Kim, E. Lundsten, J. B. Paduan, Y. K. Jin, M. J. Duchesne, T. S. Rhee, V. Brake, J., Obelcz, and M.A.L. Walton. 2024. Massive Ice Outcrops and Thermokarst Along the Arctic Shelf Edge: By-Products of Ongoing Groundwater Freezing and Thawing in the Sub-Surface. Journal of Geophysical Research: Earth Surface, 129(10). https://doi.org/10.1029/2024JF007719

Peña-Salinas, M.E., D.R. Speth, D.R. Utter, R.M. Spelz, S. Lim, R. Zierenberg, D.W. Caress, P.G. Núñez, R. Vázquez, V.J. Orphan. 2024. Thermotogota diversity and distribution patterns revealed in Auka and JaichMaa ‘ja ‘ag hydrothermal vent fields in the Pescadero Basin, Gulf of California. PeerJ, 12(e17724) https://doi.org/10.7717/peerj.17724

Preston, C., K. Yamahara, D. Pargett, C. Weinstock, J. Birch, B. Roman, S. Jensen, B. Connon, R. Jenkins,J. Ryan, and C. Scholin. 2024. Autonomous eDNA collection using an uncrewed surface vessel over a 4200-km transect of the eastern Pacific Ocean. Environmental DNA, 6(1). https://doi.org/10.1002/edn3.468

Sato, M. and K. J. Benoit-Bird. 2024. Diel Vertical Migrators Respond to Short-Term Upwelling Events. Geophysical Research Letters, 51(2). https://doi.org/10.1029/2023GL105387

Slead, S. R., M. Wei, S. L. Nooner, W. W. Chadwick, D. W. Caress, and J. Beeson. 2024. Compartmentalization of Axial Seamount's Magma Reservoir Inferred by Analytical and Numerical Deformation Modeling With Realistic Geometry. Journal of Geophysical Research: Solid Earth, 129(5). https://doi.org/10.1029/2023JB028414

Stephens, B. M., C. A. Durkin, G. Sharpe, T. T. Nguyen, J. Albers, M. L. Estapa, D. K. Steinberg, N. M. Levine, S. M. Gifford, C. A. Carlson, P. W. Boyd, and A. E. Santoro. 2024. Direct observations of microbial community succession on sinking marine particles. The ISME Journal, 18(1). https://doi.org/10.1093/ismejo/wrad010

Thorne, K. M., G. M. MacDonald, F. P. Chavez, R. F. Ambrose, and P.L. Barnard. 2024. Significant challenges to the sustainability of the California coast considering climate change. Proceedings of the National Academy of Sciences, 121(32). https://doi.org/10.1073/pnas.2310077121

Ussler, W., G. J. Doucette, C. M. Preston, C. Weinstock, N. Allaf, B. Roman, S. Jensen, K. Yamahara, L. A. Lingerfelt, C. M. Mikulski, B. W. Hobson, B. Kieft, Y. Raanan, Y. Zhang, R. M. Errera, S. A. Ruberg, P. A. Den Uyl, K. D. Goodwin, S. D. Soelberg, C.E. Furlong, J. M. Birch, and C.A. Scholin. 2024. Underway measurement of cyanobacterial microcystins using a surface plasmon resonance sensor on an autonomous underwater vehicle. Limnology and Oceanography: Methods, 22(9): 681-699. https://doi.org/10.1002/lom3.10627

Winnikoff, J. R., D. Milshteyn, S. J. Vargas-Urbano, M. A. Pedraza-Joya, A. M. Armando, O. Quehenberger, A. Sodt, R. E Gillilan, E. A. Dennis, E. Lyman, S. H. D. Haddock, and I. Budin. 2024. Homeocurvature adaptation of phospholipids to pressure in deep-sea invertebrates. Science, 384(6703). https://doi.org/adm7607

Zhang, Y., B. Kieft, B. W. Hobson, Q. Shemet, C. M. Preston, C. Wahl, K. J. Pitz, K. J. Benoit-Bird, J. M. Birch, F. P. Chavez, and C. A. Scholin. 2024. Coordinated and Collaborative Sampling by Two Long-Range Autonomous Underwater Vehicles. IEEE Journal of Oceanic Engineering, 49(4):1371-1382. https://doi.org/10.1109/JOE.2024.3408889

Zhang, Y., B. Kieft, B. W. Hobson, Y. Raanan, W. Ussler, C. M. Preston, R. M. Errera, P. A. Den Uyl, A. V. Woude, G. J. Doucette, S. A. Ruberg, K. D. Goodwin, J. M. Birch, and C.A. Scholin. 2024. Using a long-range autonomous underwater vehicle to find and sample harmful algal blooms in Lake Erie. Limnology and Oceanography: Methods, 22(7): 473-483. https://doi.org/10.1002/lom3.10621

Zhang, Y., B. W. Hobson, B. Kieft, M. A. Godin, T. Ravens, and M. Ulmgren. 2024. Adaptive Zigzag Mapping of a Patchy Field by a Long-Range Autonomous Underwater Vehicle. IEEE Journal of Oceanic Engineering, 49(2):403-415. https://doi.org/10.1109/JOE.2023.3338694

Zilliacus, K. M., J. O’Sullivan, F. Galvan-Magna, M. K. McKinzie, and D.A. Croll. 2024. A biologging database of mobulid rays from the Gulf of California, Mexico. Scientific Data, 11(1): 1-6. https://doi.org/10.1038/s41597-023-02874-w

2023

Arnoldi, N. S., S. Y. Litvin, D. J. Madigan, F. Micheli, and A. Carlisle. 2023. Multi-taxa marine isoscapes provide insight into large-scale trophic dynamics in the North Pacific. Progress in Oceanography, 213(103005). https://doi.org/10.1016/j.pocean.2023.103005

Barlow, D.R., K.C. Bierlich, W.K. Oestreich, G. Chiang, J.W. Durban, J.A. Goldbogen, D.W. Johnston, M.S. Leslie, M.J. Moore, J.P. Ryan, L.G. Torres. 2023. Shaped by their environment: Variation in blue whale morphology across three productive coastal ecosystems. Integrative Organismal Biology, 5(1). https://doi.org/10.1093/iob/obad039  

Barry, J.P., S.Y. Litvin, A. DeVogelaere, D.W. Caress, C.F. Lovera, A.S. Kahn, E.J. Burton, C. King, J.B. Paduan, C.G. Wheat, F. Girard, S. Sudek, A.M. Hartwell, A.D. Sherman, P.R. McGill, A. Schnittger, J.R. Voight, and E.J. Martin. 2023. Abyssal hydrothermal springs—Cryptic incubators for brooding octopus. Science Advances, 9(34): 1–13. science.org/doi/10.1126/sciadv.adg3247

Belcher, B. T., E. H. Bower, B. Burford, M. R. Celis, A. K. Fahimipour, I. L. Guevara, K. Katija, Z. Khokhar, A. Manjunath, S. Nelson, S. Olivetti, E. Orenstein, M. H. Saleh, B. Vaca, S. Valladares, S. A. Hein, and A.M. Hein. 2023. Demystifying image-based machine learning: A practical guide to automated analysis of field imagery using modern machine learning tools. Frontiers in Marine Science, 10(1157370). https://doi.org/10.3389/fmars.2023.1157370

Benoit-Bird, K. 2023. Vertical migration of the ocean’s deep scattering layer affects the health of the planet. The Journal of the Acoustical Society of America, 153(3). https://doi.org/10.1121/10.0018167

Benoit-Bird, K.J., C.M. Waluk, E.J. Martin, K.R. Reisenbichler, R.E. Sherlock, P.R. McGill, and B.H. Robison. 2023. Schrödinger's fish: Examining the robotic observer effect on pelagic animals. Limnology and Oceanography: Methods, 21(9): 563–580. https://doi.org/10.1002/lom3.10565

Bergamasco, A., E. Camatti, M. Messié, and Y. Deng. 2023. Editorial: Ocean-biota system: Integrated approach to climate change impacts on plankton communities in coastal and pelagic environments. Frontiers in Marine Science, 10. https://doi.org/10.3389/fmars.2023.1296237

Berman, G.H., S.B. Johnson, C.A. Seid, R.C. Vrijenhoek, and G.W. Rouse. 2023. Range extensions of Pacific bone-eating worms (Annelida, Siboglinidae, Osedax). Biodiversity Data Journal 11(e102803): 1–18. https://doi.org/10.3897/BDJ.11.e102803

Bresnahan, P., E. Briggs, B. Davis, A. R. Rodriguez, L. Edwards, C. Peach, N. Renner, H. Helling, and M. Merrifield. 2023. A Low-Cost, DIY Ultrasonic Water Level Sensor for Education, Citizen Science, and Research. Oceanography, 36(1):51-58. https://doi.org/10.5670/oceanog.2023.101

Chen, C., H. K. Watanabe, K. Gena, and S.B. Johnson. 2023. Anatomical shifts linked with unusual diets in deep‐sea snails. Ecology, 104(1). https://doi.org/10.1002/ecy.3847

Crosby, A., E.C. Orenstein, S.E. Poulton, K.L.C. Bell, B. Woodward, H. Ruhl, K. Katija, A.G. Forbes. 2023. Designing Ocean Vision AI: An investigation of community needs for imaging-based ocean conservation. In CHI '23: Proceedings of the 2023 CHI Conference on Human Factors in Computing Systems, Hamburg, Germany, April 2023. 1–16. https://doi.org/10.1145/3544548.3580886

Daniels J., G. Sainz, K. Katija. 2023. New method for rapid 3D reconstruction of semi-transparent underwater animals and structures. Integrative and Comparative Biology, 5(1): 1-12. https://doi.org/10.1093/iob/obad023

Dobbs, S.C., C.K. Paull, E.M. Lundsten, R. Gwiazda, D.W. Caress, M. McGann, M.M. Coholich, M.A. Walton, N.M. Nieminski, T. McHargue, and S.A. Graham. 2023. Sediment gravity flow frequency offshore central California diminished significantly following the Last Glacial Maximum. Frontiers in Marine Science, 10(1099472): 1–12. https://doi.org/10.3389/fmars.2023.1099472

Donham, E. M., I. Flores, A. Hooper, E. O’Brien, K. Vylet, Y. Takeshita, J. Freiwald, and K. J. Kroeker. 2023. Population-specific vulnerability to ocean change in a multistressor environment. Science Advances, 9(3). https://doi.org/10.1126/sciadv.ade2365

Girard, F., S.Y. Litvin, A. Sherman, P. McGill, C. Lovera, A. DeVogelaere, E. Burton, and J.P. Barry. 2023. Epibenthic faunal community dynamics and seasonal species turnover in a deep-sea coral ecosystem. Deep Sea Research Part I: Oceanographic Research Papers, 196(104048): 1–10. https://doi.org/10.1016/j.dsr.2023.104048

Gonzalez, B.C., V.L. González, A. Martínez, K. Worsaae, and K.J. Osborn. 2023. A transcriptome-based phylogeny for Polynoidae (Annelida: Aphroditiformia). Molecular Phylogenetics and Evolution, 185(107811). https://doi.org/10.1016/j.ympev.2023.107811

Graham, K.A., C.D. Holmes, G. Friedrich, C.D. Rauschenberg, C.R. Williams, J.W. Bottenheim, F.P. Chavez, J.W. Halfacre, D.K. Perovich, P.B. Shepson, W.R. Simpson, and P.A. Matrai. 2023. Variability of atmospheric CO2 over the Arctic Ocean: Insights from the O-Buoy Chemical Observing Network. Journal of Geophysical Research: Atmospheres, 128(6): e2022JD036437. https://doi.org/10.1029/2022JD036437

Hin, V., A.M. de Roos, K.J. Benoit-Bird, D.E. Claridge, N. DiMarzio, J.W. Durban, E.A. Falcone, E.K. Jacobson, C.M. Jones-Todd, E. Pirotta, G.S. Schorr, L. Thomas, S. Watwood, and J. Harwood. 2023. Using individual-based bioenergetic models to predict the aggregate effects of disturbance on populations: A case study with beaked whales and Navy sonar. PLOS ONE, 18(8): e0290819. https://doi.org/10.1371/journal.pone.0290819

Hoffmann, J.J., J.J. Mountjoy, E. Spain, M. Gall, L.W. Tait, Y. Ladroit, and A. Micallef. 2023. Fresh submarine groundwater discharge offshore Wellington (New Zealand): Hydroacoustic characteristics and its influence on seafloor geomorphology. Frontiers in Marine Science, 10(1204182): 1–14. https://doi.org/10.3389/fmars.2023.1204182

Hong, J.K., V.I. Brake, Y. Choi, and C.K. Paull. ARA13C cruise report: 2022 Korea-Canada-USA Beaufort Sea Research Program. Natural Resources Canada, Geological Survey of Canada, Open File 8976, 2023. https://doi.org/10.4095/331924

Johnson, K.S, J.N. Plant, T.L. Maurer, and Y. Takeshita. 2023. Processing BGC-Argo pH data at the DAC level. Argo Data Management. https://doi.org/10.13155/57195

Kim, EB, K.E. Frasier, M.F. McKenna, A.C.M. Kok, L.E. Peavey-Reeves, W.K. Oestreich, G. Arrieta, S. Wiggins, and S. Baumann-Pickering. 2023. SoundScape Learning: an automatic method for separating fish chorus in marine soundscapes. Journal of the Acoustical Society of America, 153(3): 1710-1722. https://doi.org/10.1121/10.0017432

Kroeker, K.J., E.M. Donham, K. Vylet, J.K. Warren, J. Cheresh, J. Fiechter, J. Freiwald, and Y. Takeshita. 2023. Exposure to extremes in multiple global change drivers: Characterizing pH, dissolved oxygen, and temperature variability in a dynamic, upwelling dominated ecosystem. Limnology and Oceanography, 68(7): 1611–1623. https://doi.org/10.1002/lno.12371

Lipparini, L., D. Chiacchieri, R. Bencini, and A. Micallef. 2023. Extensive freshened groundwater resources emplaced during the Messinian sea-level drawdown in southern Sicily, Italy. Communications Earth & Environment, 4(1): 1-13. https://doi.org/10.1038/s43247-023-01077-w

Masmitja, I., M. Martin, T. O'Reilly, B. Kieft, N. Palomeras, J. Navarro, and K. Katija. 2023. Dynamic robotic tracking of underwater targets using reinforcement learning. Science Robotics, 8(80). https://doi.org/10.1126/scirobotics.ade7811

Masmitja, I., M. Martin, T. O’Reilly, N. Palomeras, K. Katija and J. Navarro. 2023. Platform-portable reinforcement learning methods to localize underwater targets. In OCEANS 2023 - Limerick, Limerick, Ireland, 2023, 1-6, doi: 10.1109/OCEANSLimerick52467.2023.10244488.

McDermott, S., A. DeVogelaere, J. Barry, and A.S. Kahn. 2023. Effects of a Lost Shipping Contain in the Deep Sea. National Marine Sanctuaries Conservation Series: ONMS-023-05. https://doi.org/10.25923/57a1-q985

Messié, M., R.E. Sherlock, C.L. Huffard, J.T. Pennington, C.A. Choy, R.P. Michisaki, K. Gomes, F.P. Chavez, B.H. Robison, and K.L. Smith, Jr. 2023. Coastal upwelling drives ecosystem temporal variability from the surface to the abyssal seafloor. Proceedings of the National Academy of Sciences, 120(13): e2214567120. https://doi.org/10.1073/pnas.2214567120

Meyer, R., N. Davies, K.J. Pitz, C. Meyer, R. Samuel, J. Anderson, W. Appeltans, K. Barker, F.P. Chavez, ... P.L. Buttigieg. 2023. The founding charter of the Omic Biodiversity Observation Network (Omic BON). GigaScience. 12(giad068). https://doi.org/10.1093/gigascience/giad068

Min, M.A., D.M. Needham, S. Sudek, N.K. Truelove, K.J. Pitz, G.M. Chavez, C. Poirier, B. Gardeler, E. von der Esch, A. Ludwig, U. Riebesell, A.Z. Worden, and F.P. Chavez. 2023. Ecological divergence of a mesocosm in an eastern boundary upwelling system assessed with multi-marker environmental DNA metabarcoding. Biogeosciences, 20(7): 1277–1298. https://doi.org/10.5194/bg-20-1277-2023

Notar, J.C., M.C. Go, and S. Johnsen. 2023. Learning without a brain: classical conditioning in the ophiuroid Ophiocoma echinata. Behavioral Ecology Sociobiology, 77(126). https://doi.org/10.1007/s00265-023-03402-x

Nowinski, B., X. Feng, C. M. Preston, J. M. Birch, H. Luo, W. B. Whitman, and M.A. Moran. 2023. Ecological divergence of syntopic marine bacterial species is shaped by gene content and expression. The ISME Journal, 17(6): 813-822. https://doi.org/10.1038/s41396-023-01390-4

Orenstein, E., K. Barnard, L. Lundsten, G. Patterson, B. Woodward, and K. Katija. 2023. The FathomNet2023 Competition Dataset. ArXiv. /abs/2307.08781

Pastoressa, A.E., A. Haroon, M.E. Everett, L. Rohde, T. Bartels, M. Wollatz-Vogt, Z. Faghih, G.K. Franz, and A. Micallef. 2023. SWAN: A surface-towed modular controlled-source electromagnetic system for mapping submarine groundwater discharge and offshore groundwater resources. The Leading Edge, 42(9): 590-597. DOI:10.1190/tle42090590.1

Pearson, E.J., W.K. Oestreich, J.P. Ryan, S.M. Haver, J. Gedamke, R.P. Dziak, and C.C. Wall. 2023. Widespread passive acoustic monitoring reveals spatio-temporal patterns of blue and fin whale song vocalizations in the Northeast Pacific Ocean. Frontiers in Remote Sensing, 4: 1–13. https://doi.org/10.3389/frsen.2023.994518

Pezner, A. K., T.A. Courtney, H.C. Barkley, W. Chou, H. Chu, S.M. Clements, T. Cyronak, M.D. DeGrandpre, S.A. Kekuewa, D.I. Kline, Y. Liang, T.R. Martz, S. Mitarai, H.N. Page, M.S. Rintoul, J.E. Smith, K. Soong, Y. Takeshita, M. Tresguerres, Y. Wei, K.K. Yates, and A.J. Andersson. 2023. Increasing hypoxia on global coral reefs under ocean warming. Nature Climate Change, 13(4): 403–409. https://doi.org/10.1038/s41558-023-01619-2

Plant, J.N., C.M. Sakamoto, K.S. Johnson, T.L. Maurer, and M.B. Bif. 2023. Updated temperature correction for computing seawater nitrate with in situ ultraviolet spectrophotometer and submersible ultraviolet nitrate analyzer nitrate sensors. Limnology and Oceanography: Methods, 21(10): 581–593. https://doi.org/10.1002/lom3.10566

Player, T. R., A. Chakravarty, M. M. Zhang, B. Yair Raanan, B. Kieft, Y. Zhang, and B. Hobson. 2023. From Concept to Field Tests: Accelerated Development of Multi-AUV Missions Using a High-Fidelity Faster-than-Real-Time Simulator. In 2023 IEEE International Conference on Robotics and Automation, London, United Kingdom, 2023, 3102-3108 https://doi.org/10.1109/ICRA48891.2023.10160447

Romanowicz, B. R. Allen, K. Brekke,  L.-W. Chen, Y. Gou, I. Henson, J. Marty, D. Neuhauser, B. Pardini, T. Taira, S. Thompson, J. Zhang, and S. Zuzlewski. 2023. SeaFOAM: A year‐long DAS deployment in Monterey Bay, California. Seismological Research Letters. https://doi.org/10.1785/0220230047

Ruhl, H.A., B. J. Bett, J. Ingels, A. Martin, A.R Gates, A. Yool, M.A. Benoist, W. Appeltans, K.L. Howell, and R. Danovaro. 2023. Integrating ocean observations across body-size classes to deliver benthic invertebrate abundance and distribution information. Limnology and Oceanography Letters, 8(5): 692–706. https://doi.org/10.1002/lol2.10332

Sandoval-Belmar, M., J. Smith, A.R. Moreno, C. Anderson, R.M. Kudela, M. Sutula, F. Kessouri, D.A. Caron, F.P. Chavez, and D. Bianchi. 2023. A cross-regional examination of patterns and environmental drivers of Pseudo-nitzschia harmful algal blooms along the California coast. Harmful Algae, 126(102435). https://doi.org/10.1016/j.hal.2023.102435

Schultz, D.T., S.H. Haddock, J.V. Bredeson, R.E. Green, O. Simakov, and D.S. Rokhsar. 2023. Ancient gene linkages support ctenophores as sister to other animals. Nature: 1–8. https://doi.org/10.1038/s41586-023-05936-6

Shao, X., Y. Xu, W. Luo, W. Wang, Y. Huang, … M.B. Bif, ... Y. Luo. 2023. Global oceanic diazotroph database version 2 and elevated estimate of global oceanic N2 fixation. Earth System Science Data, 15(8): 3673-3709. https://doi.org/10.5194/essd-15-3673-2023

Stoer, A. C., Y. Takeshita, T. L. Maurer, C. Begouen Demeaux, H. C. Bittig, E. Boss, H. Claustre, C. Gordon, B.J. Greenan, K. S. Johnson, E. Organelli, R. Sauzède, C. M. Schmechtig, and K. Fennel. 2023. A census of quality-controlled Biogeochemical-Argo float measurements. Frontiers in Marine Science, 10. https://doi.org/10.3389/fmars.2023.1233289

Strock S, J.H. Costello, J. Daniels, K. Katija, and S.P. Colin. 2023. Nectophore coordination and kinematics by physonect siphonophores. Journal of Experimental Biology, 226(18): 1-9. https://doi.org/10.1242/jeb.245955

Thomas, A. T., A. Micallef, S. Duan, and Z. Zou. 2023. Characteristics and controls of an offshore freshened groundwater system in the Shengsi region, East China Sea. Frontiers in Earth Science, 11(1198215). https://doi.org/10.3389/feart.2023.1198215

Tzortzis, R., A.M. Doglioli, M. Messié, S. Barrillon, A.A. Petrenko, L. Izard, Y. Zhao, F. d’Ovidio, F. Dumas, and G. Gregori. 2023. The contrasted phytoplankton dynamics across a frontal system in the southwestern Mediterranean Sea. Biogeosciences, 20(16): 3491-3508. doi:10.5194/bg-20-3491-2023

Wolfson-Schwehr, M., C. Paull, D.W. Caress, R. Gwiazda, N.M. Nieminski, P.J. Talling, C. Carvajal, S. Simmons, and G. Troni. 2023. Time-lapse seafloor surveys reveal how turbidity currents and internal tides in Monterey Canyon interact with the seabed at centimeter-scale. Journal of Geophysical Research: Earth Surface, 128(4): e2022JF006705. https://doi.org/10.1029/2022JF006705

Wynn-Edwards, C.A., E. H. Shadwick, P. Jansen, C. Schallenberg, T. L. Maurer, and A. J. Sutton. 2023. Subantarctic pCO2 estimated from a biogeochemical float: Comparison with moored observations reinforces the importance of spatial and temporal variability. Frontiers in Marine Science, 10(1231953). https://doi.org/10.3389/fmars.2023.1231953

Zemann, B., L.V. Le, R.E. Sherlock, D. Baum, K. Katija, and T. Stach. 2023. Evolutionary traces of miniaturization in a giant—Comparative anatomy of brain and brain nerves in Bathochordaeus stygius (Tunicata, Appendicularia). Journal of Morphology, 284(7):e21598. https://doi.org/10.1002/jmor.21598

2022

Amblas, D., A. Micallef, S. Ceramicola, T.P. Gerber, M. Canals, D. Casalbore, F.L. Chiocci, R. Duran, P.T. Harris, V.A. Huvenne, S.Y. Lai, G. Lastras, C. Lo Iacono, F.L. Matos, J.J. Mountjoy, C.K. Paull, P. Puig, and A. Sanchez-Vidal. 2022. Submarine Canyons. Treatise on Geomorphology (Second Edition), 8: 830–846. https://doi.org/10.1016/B978-0-12-818234-5.00146-2