Leadership & Staff Christopher A. Scholin President and Chief Executive Officer [javascript protected email address] Curriculum Vitae Chris Scholin is a native of St. Louis, Missouri. He received a B.A. in Biology from the University of California, Santa Barbara, in 1984, and a M.A. in Molecular Biology and Immunology from Duke University in 1986. After working for a short time as a Research Assistant Professor at the University of South Carolina at Columbia, Chris entered the Massachusetts Institute of Technology – Woods Hole Oceanographic Institution (MIT/WHOI) Joint Program in Biological Oceanography with the objective of combining molecular biology and ecology in an ocean setting.Chris earned his Ph.D. from MIT/WHOI in 1992 and came to the Monterey Bay Aquarium Research Institute later that year to focus on building molecular probes to detect waterborne microbes, in particular toxic and harmful algae. Working collaboratively with a team of engineers, his group pioneered the development of the Environmental Sample Processor (ESP), an instrument that collects water samples autonomously, concentrates microorganisms, and automates the application of molecular probes to detect particular species and substances they produce.In 2009, 17 years after joining the institute as a Postdoctoral Fellow, Chris was selected to serve as President and CEO of MBARI. In addition to leading MBARI, Chris maintains an active research program that focuses on the development and application of ecogenomic sensors in coastal, open ocean, and deep-sea environments. He currently serves on the Board of Trustees of the Monterey Bay Aquarium Foundation. In 2021, Chris was awarded the Lockheed Martin Award for Ocean Science and Engineering from the Marine Technology Society.Research InterestsDevelopment and application of novel instrumentation for collecting and analyzing environmental DNA (eDNA) and other substances remotely in coastal, open ocean, deep sea, and freshwater environmentsPhytoplankton EcologyEnvironmental Sampling Processor (ESP) Curriculum VitaeEducationUniversity of Missouri, Columbia, Department of Forestry and WildlifeB.A. in Biology with Highest Honors from University of California, Santa BarbaraM.A. in Molecular Biology and Immunology from Duke UniversityPh.D. in Biological Oceanography from Massachusetts Institute of Technology – Woods Hole Oceanographic Institution Joint ProgramPostdoctoral Fellow, Monterey Bay Aquarium Research InstituteProfessional Work Experience1986–1987, University of South Carolina, Columbia, Research Assistant Professor1994–1997, MBARI, Assistant Scientist I1997–2001, MBARI, Associate Scientist II2001–2006, MBARI, Associate Scientist III2005–2009, Chair, MBARI Research Division2006–present, MBARI, Senior Scientist IVCurrent, MBARI President and Chief Executive OfficerCurrent External CommitteesMonterey Bay Aquarium Foundation Board of Trustees Publications, Reports, and Patents Selected Peer Reviewed PublicationsBowers, H.A., R. Marin, J.A. Birch, C.A. Scholin, and G.J. Doucette (2016). Recovery and identification of Pseudo-nitzschia frustules from natural samples acquired using the Environmental Sample Processor (ESP). J. Phycol. 52:135–140.Herfort, L., C. Seaton, M. Wilkin, B. Roman, C. Preston, R. Marin, K. Seitz, M. Smith, V. Haynes, C. Scholin, A. Baptista, H. Simon (2016). Use of continuous, real-time observations and model simulations to achieve autonomous, adaptive sampling of microbial processes with a robotic sampler. Linnol. Oceanog. Methods 14:50-67; doi: 10.1002/lom3.10069Yamahara, K.M., E. Demir-Hilton, C.M. Preston, R. Marin III, D. Pargett, B. Roman, S. Jensen, J.M. Birch, A.B. Boehm, C.A. Scholin (2015). Simultaneous monitoring of fecal indicators and harmful algae using an in in situ autonomous sensor. Letters in Applied Microbiology 61130-138; doi: 10.1111/lam.12432.Aylward, F.O., J.M. Eppley, J.M. Smith, F.P. Chavez, C.A. Scholin, E.F. DeLong (2015). Ocean basin-wide community transcriptome dynamics are conserved among microbial plankton spanning all three domains of life. Proc.Natl.Acad.Sci (USA) 112: 5433-5448.Varaljay, V.A., J. Robidart, C.M. Preston, S.M. Gifford, B.P. Durham, A.S. Burns, J.P. Ryan, R. Marin III, R.P. Kiene, J.P. Zehr, C.A. Scholin, and M.A. Moran (2015). Single-Taxon Field Measurements of Bacterial Gene Regulation Controlling DMSP Fate. The ISME J. 9: 1677–1686; doi:10.1038/ismej.2015.94.Seegers, B.N., J.M. Birch, R. Marin III, C.A. Scholin, D.A. Caron, E.L. Seubert, M.D.A. Howard, G.L. Roberston, and B.H. Jones (2015). Subsurface seeding of surface harmful algal blooms observed through the integration of autonomous gliders, moored Environmental Sample Processors, and satellite remote sensing in Southern California. Limnol. Oceanog. 60:754 -764.Caron, D.A., A. Gellene, G.J. Smith, E.L. Seubert, V. Campbell, G.S. Sukhatme, B. Seegers, B.H. Jones, A.A.Y. Lie, R. Terrado, M.D.A. Howard, R.M. Kudela, K. Hayashi, J. Ryan, J. Birch, E. Demir-Hilton, K. Yamahara, C.A. Scholin, M. Mengel, and G. Robertson (2015). Response of phytoplankton and bacterial biomass during a wastewater effluent diversion into nearshore coastal waters. Estuarine, Coastal and Shelf Science, doi:10.1016/j.ecss.2015.09.013Ottesen, E.A., C.R. Young, S.M. Gifford, J.M. Eppley, R. Marin III, S.C. Schuster, C.A. Scholin, and E.F. DeLong (2014). Multispecies diel transcriptional oscillations in open ocean heterotrophic bacterial assemblages. Science, 345: 207-212, 10.1126/science.1252476.Robidart, J., M.J. Church, J.P. Ryan, F. Ascani, S.T. Wilson, D. Bombar, R. Marin III, K.J. Richards, D.M. Karl, C.A. Scholin, and J.P Zehr (2014). Ecogenomic sensor reveals controls on N2-fixing microorganisms in the North Pacific Ocean. The ISME Journal, 8: 1175-1185, 10.1038/ismej.2013.244.Ussler III, W., C.M. Preston, P. Tavormina, D. Pargett, S. Jensen, B. Roman, R. Marin III, S.R. Shah, P.R. Girguis, J.M. Birch, V.J. Orphan, and C. Scholin (2013). Autonomous in situ quantitative PCR amplification of aerobic methanotroph genes in the deep sea. Environmental Science and Technology, 47: 9339–9346, doi: 10.1021/es4023199.Ottesen, E.A., C.R. Young, J.M. Eppley, J.P. Ryan, F.P. Chavez, C.A. Scholin, and E.F. DeLong (2013). Rhythm and synchrony of gene expression among sympatric marine microbial populations. Proceedings of the National Academy of Sciences, 110: E488-E497, doi: 10.1073/pnas.1222099110.Scholin C.A. (2013). Ecogenomic Sensors. In: Levin S.A. (ed.) Encyclopedia of Biodiversity, second edition, Volume 2, pp. 690-700. Waltham, MA: Academic Press.Harvey, J.B.J., J.P. Ryan, R. Marin III, C. Preston, N. Alvarado, C.A. Scholin, and R.C. Vrijenhoek (2011). Robotic sampling, in situ monitoring, and molecular detection of marine zooplankton. Journal of Experimental Marine Biology and Ecology, 413: 60-70, doi: 10.1016/j.jembe.2011.11.022.Robidart, J.C., C.M. Preston, R.W. Paerl, K.A. Turk, A.C. Mosier, C.A. Francis, C.A. Scholin, and J.P. Zehr (2012). Seasonal dynamics of Synechococcus and Thaumarchaeal microbial populations in Monterey Bay resolved in real time with remote in situ instrumentation. The ISME Journal, 6: 513-523, doi: 10.1038/ismej.2011.127.Saito, M.A., V.V. Bulygin, D.M. Moran, C. Taylor, and C. Scholin (2011). Examination of microbial proteome preservation techniques applicable to autonomous environmental sample collection. Frontiers in Aquatic Microbiology, 2: doi: 10.3389/fmicb.2011.00215.Preston, C.M., A. Harris, J.P. Ryan, B. Roman, R. Marin III, S. Jensen, C. Everlove, J. Birch, J.M. Dzenitis, D. Pargett, M. Adachi, K. Turk, J.P. Zehr, and C.A. Scholin (2011). Underwater application of quantitative PCR on an ocean mooring. PLoS ONE, 6:e22522, doi: 10.1371/journal.pone.0022522.Ottesen, E.A., R. Marin III, C.M. Preston, C.R. Young, J.P. Ryan, C.A. Scholin, and E.F. DeLong (2011). Metatranscriptomic analysis of autonomously collected and preserved marine bacterioplankton. The ISME Journal, 5: 1881-1895, doi: 10.1038/ismej.2011.70.Zehr, J.P., J. Robidart, and C. Scholin (2011). Marine microorganisms, biogeochemical cycles, and global climate change. Microbe Magazine, 6: 169-175.Ryan, J., D. Greenfield, R. Marin III, C. Preston, B. Roman, S. Jensen, D. Pargett, J. Birch, C. Mikulski, G. Doucette, and C. Scholin (2011). Harmful phytoplankton ecology studies using an autonomous molecular analytical and ocean observing network. Limnology and Oceanography, 56: 1255-1272, doi: 10.4319/lo.2011.56.4.1255.Marin III, R., and C. Scholin (2010). Sandwich Hybridization. In: Microscopic and molecular methods for quantitative phytoplankton analysis (Chapter 12), edited by B. Karlson, C. Cusack, and E. Bresnan, E.. IOC Manuals and Guides, no. 55. (IOC/2010/MG/55) Paris, UNESCO. 110 pp.Scholin, C.. (2010). What are “ecogenomic sensors?” A review and thoughts for the future. Ocean Science 6: 51-60.Doucette, G.J., C.M. Mikulski, K.L. Jones, K.L. King, D.I. Greenfield, R. Marin III, S. Jensen, B. Roman, C.T. Elliott, C.A. Scholin (2009). Remote, subsurface detection of the algal toxin domoic acid onboard the Environmental Sample Processor: assay development and initial field trials. Harmful Algae 8:880-888.Scholin, C., G. Doucette, S. Jensen, B. Roman, D. Pargett, R. Marin III, C. Preston, W. Jones, J. Feldman, C. Everlove, A. Harris, N. Alvarado, E. Massion, J. Birch, D. Greenfield, R. Vrijenhoek, C. Mikulski, K. Jones (2009). Remote detection of marine microbes, small invertebrates, harmful algae and biotoxins using the Environmental Sample Processor (ESP). Oceanography 22:158-167Preston, C., R. Marin III, S. Jenson, J. Feldman, E. Massion, E. DeLong, M. Suzuki, K. Wheeler, D. Cline, N. Alvarado, and C. Scholin (2009). Near real-time, autonomous detection of marine bacterioplankton on a coastal mooring in Monterey Bay, California, using rRNA-targeted DNA probes. Environmental Microbiology 11:1168-1180. doi:10.1111/j.1462-2920.2009.01848.xHaywood, A.J., C.A. Scholin, R. Marin III, K. Petrik, R. Pigg, M. Garrett, K. A. Steidinger, and C. Heil (2009). Detection of Karenia brevis in Florida coastal waters using sandwich hybridization assays in two formats. p 95-100. In: Proceedings of the 6th International Conference on Molluscan Shellfish Safety. Royal Society of New Zealand Miscellaneous Series 71. Blenheim, Marlborough, New Zealand. 355 pp.Greenfield, D., R. Marin III, G.J. Doucette, C. Mikulski, S. Jensen, B. Roman, N. Alvarado, and C.A. Scholin (2008). Field applications of the second-generation Environmental Sample Processor (ESP) for remote detection of harmful algae: 2006-2007. Limnology and Oceanography: Methods 6: 667-679.Scholin, C.A., G.J. Doucette, and A.D. Cembella (2008). Prospects for developing automated systems for in situ detection of harmful algae and their toxins. In: M. Babin, C.S. Roesler and J.J. Cullen (eds.) Real-Time Coastal Observing Systems for Ecosystem Dynamics and Harmful Algal Blooms, pp 413-462, UNESCO Publishing, Paris, France.Mikulski, C.M., Y.T. Park, K.L. Jones, C.K. Lee, W.A. Lim, C.A. Scholin, G.J. Doucette (2008). Development and filed application of rRNA-targeted probes for the detection of Cochlodinium ploykrikoides in Korean coastal waters using whole cell and sandwich hybridization formats. Harmful Algae 7: 347–359.Jones, W.J., C. Preston, R. Marin III, C. Scholin, R. Vrijenhoek (2007). A Robotic Molecular Method for in situ Detection of Marine Invertebrate Larvae. Molecular Ecology Resources 8: 540-550Haywood, A.J., C. A. Scholin, R. Marin III, K. A. Steidinger, C. A. Heil and J. Ray (2007). Molecular detection of the brevetoxin-producing dinoflagellate Karenia brevis (Dinophyceae) and closely related species using ribosomal RNA probes and a semi-automated sandwich hybridization assay. Journal of Phycology 43:1271–1286John Paul, Chris Scholin, Ger van den Engh, Mary Jane Perry (2007). In situ Instrumentation. Oceanography 20: 58-66.Roman, B., C. Scholin, S. Jensen, E. Massion, R, Marin III, C. Preston, D. Greenfield, W. Jones, and K. Wheeler (2007). Controlling a Robotic Marine Water Sampler with the Ruby Scripting Language. Journal of American Laboratory Automation 12: 56-61.Greenfield, D.I., R. Marin III, S. Jensen, E. Massion, B. Roman, J. Feldman, C. Scholin (2006). Application of the Environmental Sample Processor (ESP) methodology for quantifying Pseudo-nitzschia australis using ribosomal RNA-targeted probes in sandwich and fluorescent in situ hybridization. Limnology and Oceanography: Methods 4: 426-435.Metfies, K., K. Töbe, C. Scholin, and L.K. Medlin (2006). Laboratory and field applications of ribosomal RNA probes to aid the detection and monitoring of harmful algae. In: Ecology of Harmful Algae (Granéli, E., and Turner, J.T. eds), pp. 311-325. Springer Verlag, Berlin, Heidelberg, New York.Lundholm, N., Ø. Moestrup, Y. Kotaki, C. Scholin, P. Miller (2006). Inter- and intraspecific variation of the Pseudo-nitzschia delicatissima-complex (Bacillariophyceae) illustrated by rRNA probes, morphological data and phylogenetic analyses identification of P. decipiensand P. dolorosa spp. Nov. Journal of Phycology 42: 464-481.O’Halloran, C., M.W. Silver, T.R. Holman and C.A. Scholin (2006). Heterosigma akashiwo in Central California Waters. Harmful Algae 5: 124-132.Goffredi, S.K., W. Jones, C. Scholin, R. Marin, S. Hallam, R.C. Vrijenhoek ( 2006). Molecular detection of marine larvae. Marine Biotechnology 8: 149-160.Ayers K, Rhodes L, Tyrrell J, Gladstone M, Scholin C. (2005). International accreditation of sandwich hybridisation assay format DNA probes for micro-algae. New Zealand J. Marine and Freshwater Res. 39: 1225–1231.Anderson, D.M., D.M. Kulis, B.A. Keafer, K.E. Gribble, R.Marin and C.A. Scholin (2005). Identification and enumeration of Alexandrium spp. from the Gulf of Maine using molecular probes. Deep-Sea Research II 52: 2467-2490.LaGier, M.J., C.A. Scholin, J.W. Fell, J.Wang and K.D. Goodwin (2005). An electrochemical RNA hybridization assay for detection of the fecal indicator bacterium Escherichia coli. Marine Pollution Bulletin 50: 1251-1261.Babin, M., J.J. Cullen, C.S. Roesler, P.L. Donaghay, G.J. Doucette, M. Kahru, M.R. Lewis, C.A. Scholin, M.E. Sieracki, and H.M. Sosik (2005). New approaches and technologies for observing harmful algal blooms. Oceanography 18: 210-227.Ryan, J.P., H.M. Dierssen, R.M. Kudela, C.A. Scholin, K. S. Johnson, J.M. Sullivan, A.M. Fisher, E.V., Rienecker, P.R. McEnany, and F.P. Chavez (2005). Coastal Ocean Physics and red tides: an example from Monterey Bay, California. Oceanography 18: 246-255.Matweyou, J.A., D.A. Stockwell, C.A. Scholin, S. Hall, V.L. Trainer, J.D. Ray, T.E. Whitledge, A.R. Childers, F.G. Plumley (2004). Use of Alexandrium rRNA targeted probes to predict PSP events on Kodiak Island, Alaska. In: K. A. Steidinger, J. H. Landsberg, C. R. Tomas and G. A. Vargo (eds.) Harmful Algae 2002, pp. 267-269. Florida Fish and Wildlife Conservation Commission, Florida Institute of Oceanography, and Intergovernmental Oceanographic Commission of UNESCO. St. Petersburg, Florida, USA.Miller, P.E., R. Marin III, C. Scholin, J.C. Goldman, G. Doucette, C. Powell (2004). Variation in reactivity of rRNA-targeted probes towards Pseudo-nitzschia multiseries grown in nitrate- and silicate-limited continuous cultures. In K. A. Steidinger, J. H. Landsberg, C. R. Tomas and G. A. Vargo (eds.) Harmful Algae 2002, pp. 270-272. Florida Fish and Wildlife Conservation Commission, Florida Institute of Oceanography, and Intergovernmental Oceanographic Commission of UNESCO. St. Petersburg, Florida, USA.Rhodes, L., A. Haywood, J. Adamson, K. Ponikla, C. Scholin (2004). DNA probes for the rapid detection of Karenia species in New Zealand’s coastal waters. In K. A. Steidinger, J. H. Landsberg, C. R. Tomas and G. A. Vargo (eds.) Harmful Algae 2002, pp. 273-275. Florida Fish and Wildlife Conservation Commission, Florida Institute of Oceanography, and Intergovernmental Oceanographic Commission of UNESCO. St. Petersburg, Florida, USA.Scholin, C.A., E. Vrieling, L. Peperzak, L. Rhodes and P. Rublee (2003). Detection of HAB species using lectin, antibody and DNA probes. In: G.M. Hallegraeff, D.M. Anderson A.D. Cembella (eds), Manual on Harmful Marine Microalgae, pp. 131-64. Paris, Intergovernmental Oceanographic Commission, UNESCO. (Vol. 11. Second Edition).Tyrrell, J.V., L.B. Connell and C.A. Scholin (2002). Monitoring for Heterosigma akashiwo using a sandwich hybridization assay. Harmful Algae 1:205-214.Peperzak, L., B. Sandee, C. Scholin, P. Miller and L. Van Nieuwerburgh (20010. Application and flow cytometric detection of antibody and rRNA probes to Gymnodinium mikimotoi (Dinophyceae) and Pseudo-nitzschia multiseries (Bacillariophyceae). In: G. M. Hallegraeff, S. I. Blackburn, C. J. Bolch and R. J. Lewis [Eds.]. Harmful Algal Blooms 2000, pp 206-209. Intergovernmental Oceanographic Commission of UNESCO.Rhodes, L., C.A. Scholin, J.V. Tyrrell, J. Adamson and K. Todd, K. (2001). The integration of DNA probes into New Zealand’s routine phytoplankton monitoring programs. In: G. M. Hallegraeff, S. I. Blackburn, C. J. Bolch and R. J. Lewis (eds). Harmful Algal Blooms 2000, pp. 429-432. Intergovernmental Oceanographic Commission of UNESCO.Tyrrell, J.V., C.A. Scholin, P.R. Berguist and P.L. Berguist (2001). Detection and enumeration of Heterosigma akashiwo and Fibrocapsa japonica (Raphidophyceae) using rRNA-targeted oligonucleotide probes. Phycologia 40: 457-467.Rhodes, L.L., J. Adamson, and C. Scholin (2000). Pseudo-nitzschia multistriata (Bacillariophyceae) in New Zealand. New Zealand Journal of Marine and Freshwater Research 34:463-467.Miller, P.E. and C.A. Scholin (2000). On detection of Pseudo-nitzschia species using rRNA-targeted probes: sample fixation and stability. Journal of Phycology 36: 238-250.Scholin, C.A., F. Gulland, G. Doucette and others ( 2000). Mortality of sea lions along the central California coast linked to a toxic diatom bloom. Nature 403: 80-84.Scholin, C., R, Marin, P. Miller, G. Doucette, C. Powell, J. Howard., P. Haydock and J. Ray (1999). Application of DNA probes and a receptor binding assay for detection of Pseudo-nitzschia (Bacillariophyceae) species and domoic acid activity in cultured and natural samples. Journal of Phycology 35: 1356-1367.Parsons, M.L., C. Scholin, G. Doucette, G.A. Fryxell, Q. Dortch and T.M. Soniat (1999). Pseudo-nitzschia species (Bacillariophyceae) in Louisiana coastal waters: molecular probe field trials, genetic variability and domoic acid analyses. Journal of Phycology 35: 1368-1378.Bates, S.S., Scholin, C.A., Ferguson, M. & Leger, C. (1999). Application of ribosomal RNA-targeted probes to detect Pseudo-nitzschia multiseries and P. pungens in Atlantic Canadian waters. Canadian Technical Reports of Fisheries and Aquatic Sciences 2261:63-67.Rhodes, L., C. Scholin and I Garthwaite (1998). Pseudo-nitzschia in New Zealand and the role of DNA probes and immunoassays in refining marine biotoxin monitoring programmes. Natural Toxins 6: 105-111.Scholin, C., G. Massion, E. Mellinger, M. Brown, D. Wright and D. Cline (1998). The development and application of molecular probes and novel instrumentation for detection of harmful algae. Ocean Community Conference ’98 Proceedings, Marine Technology Society, Vol. 1 pp. 367-370.Scholin, C.A. and D.M. Anderson (1998). Detection and quantification of HAB species using antibody and DNA probes: progress to date and future research objectives. In: Regura, B., Blanko, J., Fernandez, M.L. and Wyatt, T [Eds.], Harmful Algae. Xunta de Galicia and Intergovernmental Oceanographic Commission of UNESCO pp. 253-257.Rhodes, L., C. Scholin, I. Garthwaite, A. Haywood and A. Thomas (1998). Domoic acid-producing Pseudo-nitzschia species educed by whole cell DNA probe-based and immunochemical assays. In: Regura, B., Blanko, J., Fernandez, M.L. and Wyatt, T [Eds.], Harmful Algae. Xunta de Galicia and Intergovernmental Oceanographic Commission of UNESCO pp. 274-277.Miller, P.E. and C.A. Scholin (1998). Identification and enumeration of cultured and wild Pseudo-nitzschia (Bacillariophyceae) using species-specific LSU rRNA-targeted fluorescent probes and filter-based whole cell hybridization. Journal of Phycology 34: 371-382.Scholin, C.A. (1998). Development of nucleic acid probe-based diagnostics for identifying and enumerating harmful algal bloom species. In: Anderson, D.M., Hallegraeff, G.M. and Cembella A.D. [Eds.], The Physiological Ecology of Harmful Algal Blooms. NATO Advanced Study Institute Series. Springer-Verlag, Heidelberg pp. 337-349.Scholin, C.A. (1998). Morphological, genetic and biogeographic relationships of Alexandrium tamarense, A. catenella and A. fundyense. In: Anderson, D.M., Hallegraeff, G.M. and Cembella A.D. [Eds.], The Physiological Ecology of Harmful Algal Blooms. NATO Advanced Study Institute Series. Springer-Verlag, Heidelberg. pp 13-27.Cangelosi, G.A., A.M. Hamlin, R. Marin III, C.A. Scholin. Detection of stable pre-rRNA in toxigenic Pseudo-nitzschia species (1997). Applied and Environmental Microbiology 63: 4859-4865.Scholin, C.A., P. Miller, K. Buck, F. Chavez, P. Harris, P. Haydock, J. Howard and G. Cangelosi (1997). Detection and quantification of Pseudo-nitzschia australis in cultured and natural populations using LSU rRNA-targeted probes. Limnology and Oceanography 42: 1265-1272.Scholin, C.A. and D.M. Anderson (1996). LSU rDNA-based RFLP assays for discriminating species and strains of Alexandrium (Dinophyceae). Journal of Phycology 32: 1022-1035.Miller, P.E. and C.A. Scholin (1996). Identification of cultured Pseudo-nitzschia (Bacillariophyceae) using species-specific LSU rRNA-targeted fluorescent probes. Journal of Phycology 32: 646-655.Scholin, C. and D.M. Anderson (1996). Identification of Alexandrium species and strains using RFLP analysis of PCR-amplified LSU rDNA. In: Oshima, Y and Fukuyo, Y [Eds.] Harmful and Toxic Algal Blooms,Intergovernmental Oceanographic Commission of UNESCO, Paris. pp 451-454.Scholin, C., P. Miller, K. Buck, F. Chavez, G. Cangelosi, P. Haydock, J. Howard and P. Harris (1996). DNA Probe-based detection of harmful algal species using Pseudo-nitzschia species as models. In: Oshima, Y and Fukuyo, Y [Eds.] Harmful and Toxic Algal Blooms,Intergovernmental Oceanographic Commission of UNESCO, Paris. pp 439-442.Vrieling, E., R. Koeman, C. Scholin, P. Scheerman, L. Peperzak, M. Veenhuis and W. Gieskes (1996). Detection of a domoic acid-producing Pseudo-nitzschia species in the Dutch Wadden Sea by electron microscopy and molecular probes. European Journal of Phycology31: 333-340.Scholin, C.A., K.R. Buck, T. Britschgi, J. Cangelosi and F.P. Chavez (1996). Identification of Pseudo-nitzschia australis (Bacillariophyceae) using rRNA-targeted probes in whole cell and sandwich hybridization formats. Phycologia 35: 190-197.Scholin, C.A., G.M. Hallegraeff and D.M. Anderson (1995). Molecular evolution of the Alexandrium tamarense “species complex” (Dinophyceae): dispersal in the North American and West Pacific regions. Phycologia 34: 472-485.Scholin, C.A. and D.M. Anderson (1994). Identification of species and strain-specific genetic markers for globally distributed Alexandrium (Dinophyceae). I. RFLP analysis of SSU rRNA genes. Journal of Phycology 30: 744-754.Scholin, C.A., M. Herzog, M.L. Sogin and D.M Anderson (1994). Identification of group and strain-specific genetic markers for globally distributed Alexandrium (Dinophyceae). II. Sequence analysis of a fragment of the LSU rRNA gene. Journal of Phycology 30: 999-1011.Scholin, C.A., M.C. Villac, K.R. Buck, J.M. Krupp, D.A. Powers, G.A. Fryxell and F.P. Chavez (1994). Ribosomal DNA sequences discriminate among toxic and non-toxic Pseudonitzschia species. Natural Toxins 2: 152-165.Judge, B.S., C.A. Scholin and D. M. Anderson (1993). RFLP analysis of the large-subunit ribosomal RNA gene of globally distributed populations of the toxic dinoflagellate Alexandrium. Biological Bulletin 185: 329-330.Scholin, C.A. and D.M. Anderson (1993). Population analysis of toxic and non-toxic Alexandrium species using ribosomal RNA signature sequences. In: Smayda, T.J., and Shimizu, Y. [Eds.], Toxic Phytoplankton Blooms in the Sea. Elsevier, New York, pp. 95-102.Scholin, C.A., D.M. Anderson and M. Sogin (1993). The existence of two distinct small-subunit rRNA genes in the toxic dinoflagellate Alexandrium fundyense. Journal of Phycology 29: 209-216.Lenaers, G., C. A. Scholin, Y. Bhaud, D. Saint-Hilaire and M. Herzog. 1991. A molecular phylogeny of dinoflagellate protists (Pyrrhophyta) inferred from the sequence of the 24S rRNA divergent domains D1 and D8. Journal of Molecular Evolution 32: 53-63.Yoch, D.C., J. Li, C-Z. Hu and C.A. Scholin (1988). Ammonia switch-off of nitrogenase from Rhodobacter sphaeroides and Methylosinus trichosporium: no evidence for Fe protein modification. Archives of Microbiology 150: 1-5. Selected ContributionsPargett, D.M., S.D. Jensen, B.A. Roman, C.M. Preston, W. Ussler III, P.R. Girguis, R. Marin III, J.M. Birch, and C.A. Scholin (2013). Deep water instrument for microbial identification, quantification, and archiving. Proceedings of Marine Technology Society Institute of Electrical and Electronics Engineers Oceans 2013, San Diego, California, 6 pp.Roman, B., C. Scholin, S. Jensen, R. Marin III, E. Massion, and J. Feldman (2004). The 2nd generation environmental sample processor: Evolution of a robotic underwater biochemical laboratory. Proceedings, OCEANS 2005 MTS/IEEE Conference. Washington, D.C.. Marine Technology Society, Columbia, MD. ISBN CD-ROM 0-933957-33-5.Scholin, C. S. Jensen, B. Roman, E. Massion, R. Marin, C. Preston, D. Greenfield, W. Jones, K. Wheeler (2006). The Environmental Sample Processor (ESP) – An Autonomous Robotic Device for Detecting Microorganisms Remotely using Molecular Probe Technology. Proceedings, OCEANS 2006 MTS/IEEE Conference. Boston, MA. Marine Technology Society, Columbia, MD. Selected ReportsScholin, C.A. 2003. Molecular Biological Technologies Applicable to Autonomous and Lagrangian Platforms (invited white paper presented at the Autonomous and Lagrangian Platforms and Sensors (ALPS) workshop, Scripps Institute of Oceanography, March ’03).Littaker, W., C. Scholin, G.R. Vasta. 2000. Molecular approaches for identification and environmental detection of Pfiesteria piscicida and Pfiesteria-like dinoflagellates. Workshop held at the Center of Marine Biotechnology September 1999, Baltimore, MD.Scholin, C.A., N. Wainwright and G.M. Hallegraeff. 1994. Feasibility of developing a rapid diagnostic test for toxic dinoflagellates in ships’ ballast water. Report for the Australian Quarantine and Inspection Service. PatentsAnderson, D.M., and Scholin, C.A. 1996. Genetic markers and methods of identifying Alexandrium (Dinophyceae) species. US Pat. No. 5582983.Scholin, C.A., Haydock, P., and Cangelosi, G. 1999. Detection of toxigenic marine pennate diatoms of the genus Pseudo-nitzschia US Pat. No. 5958689.Scholin, C.A., Massion, E.I., Wright, D.K., Cline, D.E., Mellinger, E., Brown, M. 2001. Aquatic autosampler device. US Pat. No. 6187530.Tyrrell, J.V., Scholin, C.A., Bergquist, P., and Bergquist, P. 2004. Compostion and methods for detecting Raphidophytes. US Pat. No. 6787648
Kelly, R.P., D.M. Lodge, K.N. Lee, S. Theroux, A.J. Sepulveda, C.A. Scholin, J.M. Craine, E.A. Allan, K.M. Nichols, K.M. Parsons, K.D. Goodwin, Z. Gold, F.P. Chavez, R.T. Noble, C.L. Abbott, M.R. Baerwald, A.M. Naaum, P.M. Thielen, A.L. Simons, C.L. Jerde, J.J. Duda, M.E. Hunter, J.A. Hagan, R.S. Meyer, J.A. Steele, M.Y. Stoeckle, H.M. Bik, C.P. Meyer, E. Stein, K.E. James, A.C. Thomas, E. Demir-Hilton, M.A. Timmers, J.F. Griffith, M.J. Weise, and S.B. Weisberg. 2024. Toward a national eDNA strategy for the United States. Environmental DNA, 6(1): e432. https://doi.org/10.1002/edn3.432
Preston, C., K. Yamahara, D. Pargett, C. Weinstock, J. Birch, B. Roman, S. Jensen, B. Connon, R. Jenkins,J. Ryan, and C. Scholin. 2024. Autonomous eDNA collection using an uncrewed surface vessel over a 4200-km transect of the eastern Pacific Ocean. Environmental DNA, 6(1). https://doi.org/10.1002/edn3.468
Zhang, Y., B. Kieft, B. W. Hobson, Y. Raanan, W. Ussler, C. M. Preston, R. M. Errera, P. A. Den Uyl, A. V. Woude, G. J. Doucette, S. A. Ruberg, K. D. Goodwin, J. M. Birch, and C.A. Scholin. 2024. Using a long-range autonomous underwater vehicle to find and sample harmful algal blooms in Lake Erie. Limnology and Oceanography: Methods, 22(7): 473-483. https://doi.org/10.1002/lom3.10621
Zhang, Y., B. Kieft, B. W. Hobson, Q. Shemet, C. M. Preston, C. Wahl, K. J. Pitz, K. J. Benoit-Bird, J. M. Birch, F. P. Chavez, and C. A. Scholin. 2024. Coordinated and Collaborative Sampling by Two Long-Range Autonomous Underwater Vehicles. IEEE Journal of Oceanic Engineering, 49(4):1371-1382. https://doi.org/10.1109/JOE.2024.3408889
Den Uyl, P. A., L.R. Thompson, R.M. Errera, J.M. Birch, C.M. Preston, W.I. Ussler, C.E. Yancey, S.R. Chaganti, S.A. Ruberg, G.J. Doucette, G. J. Dick, C.A. Scholin, and K.D. Goodwin. 2022. Lake Erie field trials to advance autonomous monitoring of cyanobacterial harmful algal blooms. Frontiers in Marine Science, 9: 1–18. https://doi.org/10.3389/fmars.2022.1021952
Searcy, R.T., A.B. Boehm, C. Weinstock, C.M. Preston, S. Jensen, B. Roman, J.M. Birch, C.A. Scholin, K.S. Van Houtan, J.D. Kiernan, and K.M. Yamahara. 2022. High‐frequency and long‐term observations of eDNA from imperiled salmonids in a coastal stream: Temporal dynamics, relationships with environmental factors, and comparisons with conventional observations. Environmental DNA, 4(4): 776–789. https://doi.org/10.1002/edn3.293
Zhang, Y., B. Kieft, B.W. Hobson, B.Y. Raanan, S. Urmy, K.J. Pitz, C.M. Preston, B. Roman, K.J. Benoit-Bird, J.M. Birch, F.P. Chavez, and C.A. Scholin. 2021. Persistent sampling of vertically migrating biological layers by an autonomous underwater vehicle within the beam of a seabed-mounted echosounder. IEEE Journal of Oceanic Engineering, 46: 497–508. https://doi.org/10.1109/JOE.2020.2982811
Chavez, F.P., M. Min, K. Pitz, N. Truelove, J. Baker, D. LaScala-Grunewald, M. Blum, K. Walz, C. Nye, A. Djurhuus, R.J. Miller, K.D. Goodwin, F.E. Muller-Karger, H.A. Ruhl, and C.A. Scholin. 2021. Observing life in the sea using environmental DNA. Oceanography, 34: 102–119. https://doi.org/10.5670/oceanog.2021.218
Zhang, Y., J.P. Ryan, B.W. Hobson, B. Kieft, A. Romano, B. Barone, C.M. Preston, B. Roman, B.Y. Raanan, D. Pargett, M. Dugenne, A.E. White, F. Henderikx Freitas, S. Poulos, S.T. Wilson, E.F. DeLong, D.M. Karl, J.M. Birch, J.G. Bellingham, and C.A. Scholin. 2021. A system of coordinated autonomous robots for Lagrangian studies of microbes in the oceanic deep chlorophyll maximum. Science Robotics, 6: 1–11. https://doi.org/10.1126/scirobotics.abb9138
Nowinski, B., C.B. Smith, C.M. Thomas, K. Esson, R. Marin III, C.M. Preston, J.M. Birch, C.A. Scholin, M. Huntemann, A. Clum, B. Foster, B. Foster, S. Roux, K. Palaniappan, N. Varghese, S. Mukherjee, T.K.B. Reddy, C. Daum, A. Copeland, I.M.A. Chen, N.N. Ivanova, N.C. Kyrpides, T. Glavina del Rio, W.B. Whitman, R.P. Kiene, E.A. Eloe-Fadrosh, and M.A. Moran. 2019. Microbial metagenomes and metatranscriptomes during a coastal phytoplankton bloom. Scientific Data, 6: 1–7. https://doi.org/10.1038/s41597-019-0132-4
Nowinski, B., J. Motard-Cote, M. Landa, C.M. Preston, C.A. Scholin, J.M. Birch, R.P. Kiene, and M.A. Moran. 2019. Microdiversity and temporal dynamics of marine bacterial dimethylsulfoniopropionate genes. Environmental Microbiology, 21: 1687–1701. https://doi.org/10.1111/1462-2920.14560
Kiene, R.P., B. Nowinski, K. Esson, C. Preston, R. Marin III, J. Birch, C. Scholin, J. Ryan, and M.A. Moran. 2019. Unprecedented DMSP Concentrations in a Massive Dinoflagellate Bloom in Monterey Bay, CA. Geophysical Research Letters, 46: 12279–12288. https://doi.org/10.1029/2019GL085496
Krolicka, A., C. Boccadoro, M.M. Nilsen, E. Demir-Hilton, J. Birch, C. Preston, C. Scholin, and T. Baussant. 2019. Identification of microbial key-indicators of oil contamination at sea through tracking of oil biotransformation: An Arctic field and laboratory study. Science of the Total Environment, 696: 1–13. https://doi.org/10.1016/j.scitotenv.2019.133715
Yamahara, K.M., C.M. Preston, J. Birch, K.R. Walz, R. Marin III, S. Jensen, D. Pargett, B. Roman, W. Ussler III, Y. Zhang, J. Ryan, B. Hobson, B. Kieft, B.Y. Raanan, K.D. Goodwin, F.P. Chavez, and C.A. Scholin. 2019. In situ Autonomous Acquisition and Preservation of Marine Environmental DNA Using an Autonomous Underwater Vehicle. Frontiers in Marine Science, 6: 1–14. https://doi.org/10.3389/fmars.2019.00373
Kolody, B.C., J.P. McCrow, L. Zeigler Allen, F.O. Aylward, K.M. Fontanez, A. Moustafa, M. Moniruzzaman, F.P. Chavez, C.A. Scholin, E.E. Allen, A.Z. Worden, E.F. DeLong, and A.E. Allen. 2019. Diel transcriptional response of a California Current plankton microbiome to light, low iron, and enduring viral infection. The ISME Journal, 13: 2817–2833. https://doi.org/10.1038/s41396-019-0472-2
Zhang, Y., J.P. Ryan, B. Kieft, B.W. Hobson, R.S. McEwen, M.A. Godin, J.B. Harvey, B. Barone, J.G. Bellingham, J.M. Birch, C.A. Scholin, and F.P. Chavez. 2019. Targeted sampling by autonomous underwater vehicles. Frontiers in Marine Science, 6: 1–12. https://doi.org/10.3389/fmars.2019.00415
Bowers, H.A., J.P. Ryan, K. Hayashi, A.L. Woods, R. Marin III, G.J. Smith, K.A. Hubbard, G. Doucette, C. Mikulski, A.G. Gellene, Y. Zhang, R. Kudela, D. Caron, J. Birch, and C. Scholin. 2018. Diversity and toxicity of Pseudo-nitzschia species in Monterey Bay: Perspectives from targeted and adaptive sampling. Harmful Algae, 78: 129–141. https://doi.org/10.1016/j.hal.2018.08.006
Birch, J.M., B. Barone, E. DeLong, G. Foreman, K. Gomes, B. Hobson, S. Jensen, D.M. Karl, B. Kieft, T. O'Reilly, D. Pargett, C. Preston, B. Roman, A. Romano, J. Ryan, C.A. Scholin, W. Ussler, K. Yamahara, and Y. Zhang. 2018. Autonomous targeted sampling of the deep chlorophyll maximum layer in a subtropical north Pacific eddy. OCEANS 2018 MTS/IEEE Charleston, pp. 1-5. doi: 10.1109/OCEANS.2018.8604898.
Caron, D.A., A.G. Gellene, J. Smith, E.L. Seubert, V. Campbell, G.S. Sukhatme, B. Seegers, B.H. Jones, A.A.Y. Lie, R. Terrado, M.D.A. Howard, R.M. Kudela, K. Hayashi, J. Ryan, J. Birch, E. Demir-Hilton, K. Yamahara, C. Scholin, M. Mengel, and G. Robertson. 2017. Response of phytoplankton and bacterial biomass during a wastewater effluent diversion into nearshore coastal waters. Estuarine, Coastal and Shelf Science, 186: 223–236. http://dx.doi.org/10.1016/j.ecss.2015.09.013
Chavez, F.P., P.G. Brewer, and C.A. Scholin. Special issue on celebrating 30 years of ocean science and technology at the Monterey Bay Aquarium Research Institute. Oceanography, 30. https://tos.org/oceanography/issue/volume-30-issue-04
Scholin, C.A., J. Birch, S. Jensen, R. Marin III, E. Massion, D. Pargett, C. Preston, B. Roman, and W. Ussler III. 2017. The quest to develop ecogenomic sensors: A 25-Year history of the Environmental Sample Processor (ESP) as a case study. Oceanography, 30: 100–113. https://doi.org/10.5670/oceanog.2017.427
Olins, H.C., D.R. Rogers, C. Preston, W. Ussler III, D. Pargett, S. Jensen, B. Roman, J.M. Birch, C.A. Scholin, M.F. Haroon, and P.R. Girguis. 2017. Co-registered Geochemistry and Metatranscriptomics Reveal Unexpected Distributions of Microbial Activity within a Hydrothermal Vent Field. Frontiers in Microbiology, 8: 1–18. https://doi.org/10.3389/fmicb.2017.01042
Ryan, J.P., R.M. Kudela, J.M. Birch, M. Blum, H.A. Bowers, F.P. Chavez, G.J. Doucette, K. Hayashi, R. Marin III, C.M. Mikulski, T. Pennington, C.A. Scholin, G.J. Smith, A. Woods, and Y. Zhang. 2017. Causality of an extreme harmful algal bloom in Monterey Bay, California, during the 2014–2016 northeast Pacific warm anomaly. Geophysical Research Letters, 44: 5571–5579. https://doi.org/10.1002/2017GL072637
Chavez, F.P., P.G. Brewer, and C.A. Scholin. 2017. Celebrating 30 years of ocean science technology at the Monterey Bay Aquarium Research Institute. Oceanography, 30: 18–25. https://doi.org/10.5670/oceanog.2017.420
Bowers, H.A., J. Ryan, R. Marin III, J.M. Birch, and C.A. Scholin. 2017. Sandwich hybridization probes for the detection of Pseudo-nitzschia (Bacillariophyceae) species: An update to existing probes and a description of new probes Harmful Algae, 70: 37–51. https://doi.org/10.1016/j.hal.2017.10.005
Bowers, H.A., R. Marin III, J.M. Birch, C.A. Scholin, and G.J. Doucette. 2016. Recovery and identification of Pseudo-nitzschia (Bacillariophyceae) frustules from natural samples acquired using the environmental sample processor. Journal of Phycology, 52: 135–140. http://dx.doi.org/10.1111/jpy.12369
Herfort, L., C. Seaton, M. Wilkin, B. Roman, C.M. Preston, R. Marin, K. Seitz, M.W. Smith, V. Haynes, C.A. Scholin, A.M. Baptista, and H.M. Simon. 2016. Use of continuous, real-time observations and model simulations to achieve autonomous, adaptive sampling of microbial processes with a robotic sampler. Limnology and Oceanography: Methods, 14: 50–67. http://dx.doi.org/10.1002/lom3.10069
Yamahara, K.M., E. Demir-Hilton, C.M. Preston, R. Marin III, D. Pargett, B. Roman, S. Jensen, J.M. Birch, A.B. Boehm, and C.A. Scholin. 2015. Simultaneous monitoring of faecal indicators and harmful algae using an in-situ autonomous sensor. Letters in Applied Microbiology, 61: 130–138. http://dx.doi.org/10.1111/lam.12432
Aylward, F.O., J.M. Eppley, J.M. Smith, F.P. Chavez, C.A. Scholin, and E.F. DeLong. 2015. Microbial community transcriptional networks are conserved in three domains at ocean basin scales. Proceedings of the National Academy of Sciences, 112: 5443–5448. http://dx.doi.org/10.1073/pnas.1502883112
Varaljay, V.A., J. Robidart, C.M. Preston, S.M. Gifford, B.P. Durham, A.S. Burns, J.P. Ryan, R. Marin, III, R.P. Kiene, J.P. Zehr, C.A. Scholin, and M. Ann Moran. 2015. Single-taxon field measurements of bacterial gene regulation controlling DMSP fate. ISME Journal, 9: 1692. http://dx.doi.org/10.1038/ismej.2015.94
Seegers, B.N., J.M. Birch, R. Marin, C.A. Scholin, D.A. Caron, E.L. Seubert, M.D.A. Howard, G.L. Robertson, and B.H. Jones. 2015. Subsurface seeding of surface harmful algal blooms observed through the integration of autonomous gliders, moored environmental sample processors, and satellite remote sensing in southern California. Limnology and Oceanography, 60: 754–764. http://dx.doi.org/10.1002/lno.10082
Pargett, D.M., J.M. Birch, C.M. Preston, J.P. Ryan, Y. Zhang, and C.A. Scholin. 2015. Development of a mobile ecogenomic sensor. Proceedings of the Marine Technology Society / Institute of Electrical and Electronics Engineers Oceans Conference, 2015: 1–6.
Zhang, Y., B. Kieft, R. McEwen, M.J. Stanway, J. Bellingham, J. Ryan, B. Hobson, D. Pargett, J. Birch, and C. Scholin. 2015. Tracking and sampling of a phytoplankton patch by an autonomous underwater vehicle in drifting mode. Proceedings of the Marine Technology Society / Institute of Electrical and Electronics Engineers Oceans Conference, Genova, 18–21 May 2015.
Ottesen, E.A., C.R. Young, S.M. Gifford, J.M. Eppley, R. Marin III, S.C. Schuster, C.A. Scholin, and E.F. DeLong. 2014. Multispecies diel transcriptional oscillations in open ocean heterotrophic bacterial assemblages. Science, 345: 207–212. http://dx.doi.org/10.1126/science.1252476
Robidart, J.C., M.J. Church, J.P. Ryan, F. Ascani, S.T. Wilson, D. Bombar, R. Marin III, K.J. Richards, D.M. Karl, C.A. Scholin, and J.P. Zehr. 2014. Ecogenomic sensor reveals controls on N2-fixing microorganisms in the North Pacific Ocean. The ISME Journal, 8: 1175–1185. http://dx.doi.org/10.1038/ismej.2013.244
Ussler III, W., C.M. Preston, P. Tavormina, D. Pargett, S. Jensen, B. Roman, R. Marin III, S.R. Shah, P.R. Girguis, J.M. Birch, V.J. Orphan, and C. Scholin. 2013. Autonomous application of quantitative PCR in the deep sea: In situ surveys of aerobic methanotrophs using the deep-sea Environmental Sample Processor. Environmental Science and Technology, 47: 9339–9346. http://dx.doi.org/10.1021/es4023199
Ottesen, E.A., C.R. Young, J.M. Eppley, J.P. Ryan, F.P. Chavez, C.A. Scholin, and E.F. DeLong. 2013. Pattern and synchrony of gene expression among sympatric marine microbial populations. Proceedings of the National Academy of Sciences, 110: E488–E497. http://dx.doi.org/10.1073/pnas.1222099110
Pargett, D.M., S.D. Jensen, B.A. Roman, C.M. Preston, W. Ussler III, P.R. Girguis, R. Marin III, J.M. Birch, and C.A. Scholin. 2013. Deep water instrument for microbial identification, quantification, and archiving. Proceedings of Marine Technology Society/Institute of Electrical and Electronics Engineers Oceans '13, San Diego, 23–26 September 2013.
Harvey, J.B.J., J.P. Ryan, R. Marin III, C.M. Preston, N. Alvarado, C.A. Scholin, and R.C. Vrijenhoek. 2012. Robotic sampling, in situ monitoring and molecular detection of marine zooplankton. Journal of Experimental Marine Biology and Ecology, 413: 60–70. http://dx.doi.org/10.1016/j.jembe.2011.11.022
Robidart, J.C., C.M. Preston, R.W. Paerl, K.A. Turk, A.C. Mosier, C.A. Francis, C.A. Scholin, and J.P. Zehr. 2012. Seasonal Synechococcus and Thaumarchaeal population dynamics examined with high resolution with remote in situ instrumentation. The ISME Journal, 6: 513–523. http://dx.doi.org/10.1038/ismej.2011.127
Saito, M.A., V.V. Bulygin, D.M. Moran, C. Taylor, and C. Scholin. 2011. Examination of microbial proteome preservation techniques applicable to autonomous environmental sample collection. Frontiers in Aquatic Microbiology, 2: 1–10. http://dx.doi.org/10.3389/fmicb.2011.00215
Preston, C.M., A. Harris, J.P. Ryan, B. Roman, R. Marin III, S. Jensen, C. Everlove, J. Birch, J.M. Dzenitis, D. Pargett, M. Adachi, K. Turk, J.P. Zehr, and C.A. Scholin. 2011. Underwater application of quantitative PCR on an ocean mooring. PLoS ONE, 6: E22522. http://dx.doi.org/10.1371/journal.pone.0022522
Ottesen, E.A., R. Marin III, C.M. Preston, C.R. Young, J.P. Ryan, C.A. Scholin, and E.F. DeLong. 2011. Metatranscriptomic analysis of autonomously collected and preserved marine bacterioplankton. The ISME Journal, 5: 1881–1895. http://dx.doi.org/10.1038/ismej.2011.70
Ryan, J., D. Greenfield, R. Marin III, C. Preston, B. Roman, S. Jensen, D. Pargett, J. Birch, C. Mikulski, G. Doucette, and C. Scholin. 2011. Harmful phytoplankton ecology studies using an autonomous molecular analytical and ocean observing network. Limnology and Oceanography, 56: 1255–1272. http://dx.doi.org/10.4319/lo.2011.56.4.1255
Zehr, J.P., J. Robidart, and C. Scholin. 2011. Global environmental change demands a deeper understanding of how marine microbes drive global ecosystems. Microbe Magazine, 6: 169–175.
Marin III, R., and C. Scholin. 2010. Sandwich Hybridization. IOC Manuals and Guides: Microscopic and molecular methods for quantitative phytoplankton analysis, 55: 110.
Scholin, C. 2010. What are “ecogenomic sensors?” A review and thoughts for the future. Ocean Science, 6: 51–60. http://dx.doi.org/10.5194/os-6-51-2010
Doucette, G.J., C. Mikulski, K.L. Jones, K.L. King, D. Greenfield, R. Marin III, S. Jensen, B. Roman, C.T. Elliott, and C. Scholin. 2009. Remote, subsurface detection of the algal toxin domoic acid onboard the Environmental Sample Processor: Assay development and initial field trials. Harmful Algae, 8: 880–888.
Scholin, C., G. Doucette, S. Jensen, B. Roman, D. Pargett, R. Marin III, C. Preston, W. Jones, J. Feldman, C. Everlove, A. Harris, N. Alvarado, E. Massion, J. Birch, D. Greenfield, R.C. Vrijenhoek, C. Mikulski, and K. Jones. 2009. Remote detection of marine microbes, small invertebrates, harmful algae and biotoxins using the Environmental Sample Processor (ESP). Oceanography, 22: 158–167.
Preston, C.M., R. Marin III, S.D. Jensen, J. Feldman, J.M. Birch, E.I. Massion, E.F. DeLong, M. Suzuki, K. Wheeler, and C.A. Scholin. 2009. Near real-time, autonomous detection of marine bacterioplankton on a coastal mooring in Monterey Bay, California, using rRNA-targeted DNA probes. Environmental Microbiology, 11: 1168–1180.
Haywood, A.J., C. Scholin, R. Marin III, K. Petrik, R. Pigg, M. Garrett, K.A. Steidinger, and C. Heil. 2009. Detection of Karenia brevis in Florida coastal waters using sandwich hybridization assays in two formats. Proceedings of the Sixth International Conference on Molluscan Shellfish Safety.
Greenfield, D., R. Marin III, G.J. Doucette, C. Mikulski, S. Jensen, B. Roman, N. Alvarado, and C.A. Scholin. 2008. Field applications of the second-generation Environmental Sample Processor (ESP) for remote detection of harmful algae: 2006–2007. Limnology and Oceanography: Methods, 6: 667–679.
Jones, W.J., C.M. Preston, R. Marin III, C.A. Scholin, and R.C. Vrijenhoek. 2008. A robotic molecular method for in situ detection of marine invertebrate larvae. Molecular Ecology Resources, 8: 540–550. http://dx.doi.org/10.1111/j.1471-8286.2007.02021.x
Mikulski, C.M., Y.T. Park, K.L. Jones, C.K. Lee, W.A. Lim, C.A. Scholin, and G.J. Doucette. 2008. Development and field application of rRNA-targeted probes for the detection of Cochlodinium ploykrikoides in Korean coastal waters using whole cell and sandwich hybridization formats. Harmful Algae, 7: 347–359.
Scholin, C.A., G.J. Doucette, and A.D. Cembella. 2008. Prospects for developing automated systems for in situ detection of harmful algae and their toxins. Real-Time Coastal Observing Systems for Ecosystem Dynamics and Harmful Algal Blooms: 413–462.
Roman, B., C.A. Scholin, S. Jensen, E. Massion, R. Marin III, C. Preston, D. Greenfield, W. Jones, and K. Wheeler. 2007. Controlling a robotic marine water sampler with the Ruby scripting language. Journal of American Laboratory Automation, 12: 56–61.
Haywood, A.J., C.A. Scholin, R. Marin III, K.A. Steidinger, C. Heil, and J. Ray. 2007. Molecular detection of the brevetoxin-producing dinoflagellate Karenia brevis and closely related species using rRNA-targeted probes and a semiautomated sandwich hybridization assay. Journal of Phycology, 43: 1271–1286. http://dx.doi.org/10.1111/j.1529-8817.2007.00407.x
Paul, J., C.A. Scholin, G. Van den Engh, and M.J. Perry. 2007. In-situ instrumentation. Oceanography, 20: 58–66.
Greenfield, D.I., R. Marin III, S. Jensen, E. Massion, B. Roman, J. Feldman, and C.A. Scholin. 2006. Application of the environmental sample processor (ESP) methodology for quantifying Pseudo-nitzschia australis using ribosomal RNA-targeted probes in sandwich and fluorescent in situ hybridization formats. Limnology and Oceanography: Methods, 4: 426–435.
Metfies, K., K. Töbe, C.A. Scholin, and L.K. Medlin. 2006. Laboratory and field applications of ribosomal RNA probes to aid the detection and monitoring of harmful algae. Ecology of Harmful Algae: 311–325.
Goffredi, S.K., W.J. Jones, C.A. Scholin, R. Marin III, and R.C. Vrijenhoek. 2006. Molecular detection of marine invertebrate larvae. Marine Biotechnology, 8: 149–160. http://dx.doi.org/10.1007/s10126-005-5016-2
Lundholm, N., Ø. Moestrup, Y. Kotaki, C.A. Scholin, and P. Miller. 2006. Inter- and intraspecific variation of the Pseudo-nitzschia delicatissima-complex (Bacillariophyceae) illustrated by rRNA probes, morphological data and phylogenetic analyses identification of P. decipiens and P. dolorosa. Journal of Phycology, 42: 464–481.
O'Halloran, C., M.W. Silver, T.R. Holman, and C.A. Scholin. 2006. Heterosigma akashiwo in Central California waters. Harmful Algae, 5: 124–132. http://dx.doi.org/10.1016/j.hal.2005.06.009
Scholin, C.A., S. Jensen, B. Roman, E. Massion, R. Marin III, C. Preston, D. Greenfield, W. Jones, and K. Wheeler. 2006. The Environmental Sample Processor (ESP)― An autonomous robotic device for detecting microorganisms remotely using molecular probe technology. Proceedings of the Marine Technology Society / Institute of Electrical and Electronics Engineers Oceans Conference.
Ryan, J.P., H.M. Dierssen, R.M. Kudela, C.A. Scholin, K.S. Johnson, J.M. Sullivan, A.M. Fischer, E.V. Rienecker, P.R. McEnaney, and F.P. Chavez. 2005. Coastal ocean physics and red tides: An example from Monterey Bay, California. Oceanography, 18: 246–255.
Anderson, D.M., D.M. Kulis, B.A. Keafer, K.E. Gribble, R. Marin III, and C.A. Scholin. 2005. Identification and enumeration of Alexandrium spp. from the Gulf of Maine using molecular probes. Deep-Sea Research Part II, 52: 2467–2490. http://dx.doi.org/10.1016/j.dsr2.2005.06.015
Ayers, K., L. Rhodes, J. Tyrrell, M. Gladstone, and C.A. Scholin. 2005. International accreditation of sandwich hybridisation assay format DNA probes for micro-algae. New Zealand Journal of Marine and Freshwater Research, 39: 1225–1231.
Babin, M., J.J. Cullen, C.S. Roesler, P.L. Donaghay, G.J. Doucette, M. Kahru, M.R. Lewis, C.A. Scholin, M.E. Sieracki, and H.M. Sosik. 2005. New approaches and technologies for observing harmful algal blooms. Oceanography, 18: 210–227.
Goffredi, S.K., W.J. Jones, C.A. Scholin, R. Marin III, and R.C. Vrijenhoek. 2005. Molecular detection of marine larvae. Marine Molecular Biotechnology, 8: 1–12.
LaGier, M.J., C.A. Scholin, J.W. Fell, J. Wang, and K.D. Goodwin. 2005. An electrochemical RNA hybridization assay for detection of the fecal indicator bacterium Escherichia coli. Marine Pollution Bulletin, 50: 1251–1261. http://dx.doi.org/10.1016/j.marpolbul.2005.04.034
Roman, B., C.A. Scholin, S. Jensen, R. Marin III, E. Massion, and J. Feldman. 2005. The second generation environmental sample processor: Evolution of a robotic underwater biochemical laboratory. Proceedings of the Marine Technology Society / Institute of Electrical and Electronics Engineers Oceans Conference.
Matweyou, J.A., D.A. Stockwell, C. Scholin, S. Hall, V.L. Trainer, J.D. Ray, T.E. Whitledge, A.R. Childers, and F.G. Plumley. 2004. Use of Alexandrium rRNA targeted probes to predict PSP events on Kodiak Island, Alaska. Harmful Algae 2002: 267–269.
Miller, P.E., R. Marin III, C. Scholin, J.C. Goldman, G. Doucette, and C. Powell. 2004. Variation in reactivity of rRNA-targeted probes towards Pseudo-nitzschia multiseries grown in nitrate- and silicate-limited continuous cultures. Harmful Algae 2002: 270–272.
Rhodes, L., A. Haywood, J. Adamson, K. Ponikla, and C. Scholin. 2004. DNA probes for the rapid detection of Karenia species in New Zealand's coastal waters. Harmful Algae 2002: 273–275.
Matweyou, J.A., D.A. Stockwell, C.A. Scholin, S. Hall, V.L. Trainer, J.D. Ray, T.E. Whitledge, A.R. Childers, and F.G. Plumley. 2003. Use of Alexandrium rRNA targeted probes to predict PSP events on Kodiak Island, Alaska. Proceedings of the Xth International Conference on Harmful Algae.
Scholin, C.A. 2003. Molecular biological technologies applicable to autonomous and lagrangian platforms. Autonomous and Lagrangian Platforms and Sensors Workshop.
Scholin, C.A., E. Vrieling, L. Peperzak, L. Rhodes, and P. Rublee. 2003. Detection of HAB species using lectin, antibody and DNA probes. In Manual on Harmful Marine Microalgae, edited by G.M. Hallegraeff, D.M. Anderson, and A.D. Cembella, 131–164. Paris: UNESCO, 2003.
Peperzak, L., B. Sandee, C. Scholin, P. Miller, and L. Van Nieuwerburgh. 2002. Application and flow cytometric detection of antibody and rRNA probes to Gymnodinium mikimotoi (Dinophyceae) and Pseudo-nitzschia multiseries (Bacillariophyceae). Harmful Algal Blooms 2000: 206–209.
Rhodes, L., C. Scholin, J. Tyrrell, J. Adamson , and K. Todd. 2002. The integration of DNA probes into New Zealand's routine phytoplankton monitoring programmes. Harmful Algal Blooms 2000: 429–432.
Scholin, C.A., E. Vrieling, L. Peperzak, L. Rhodes, and P. Rublee. 2002. Detection of HAB species using lectin, antibody, and DNA probes. Manual on Harmful Marine Microalgae.
Tyrrell, J.V., L.B. Connell, and C.A. Scholin. 2002. Monitoring for Heterosigma akashiwo using a sandwich hybridization assay. Harmful Algae, 1: 205–214.
Tyrrell, J.V., P.R. Bergquist, P.L. Bergquist, and C.A. Scholin. 2001. Detection and enumeration of Heterosigma akashiwo and Fibrocapsa japonica (Raphidophyceae) using rRNA-targeted oligonucleotide probes. Phycologia, 40: 457–467. http://dx.doi.org/10.2216/i0031-8884-40-5-457.1
Scholin, C.A., F. Gulland, G.J. Doucette, S. Benson, M. Busman, F.P. Chavez, J. Cordaro, R. DeLong, A. De Vogelaere, J. Harvey, M. Haulena, K. Lefebvre, T. Lipscomb, S. Loscutoff, L.J. Lowenstine, R. Marin III, P.E. Miller, W.A. McLellan, P.D.R. Moeller, C.L. Powell, T. Rowles, P. Silvagni, M.W. Silver, T. Spraker, V. Trainer, and F.M. Van Dolah. 2000. Mortality of sea lions along the central California coast linked to a toxic diatom bloom. Nature, 403: 80–84. http://dx.doi.org/10.1038/47481
Miller, P.E., and C.A. Scholin. 2000. On detection of Pseudo-nitzschia (Bacillariophyceae) species using whole cell hybridization: Sample fixation and stability. Journal of Phycology, 36: 251–265.
Miller, P.E., and C.A. Scholin. 2000. On detection of Pseudo-nitzschia species using rRNA-targeted probes: Sample fixation and stability. Journal of Phycology, 36: 238–250.
Rhodes, L.L., J. Adamson, and C.A. Scholin. 2000. Pseudo-nitzschia multistriata (Bacillariophyceae) in New Zealand. New Zealand Journal of Marine and Freshwater Research, 34: 463–467.
Scholin, C.A. 2000. Application of DNA probes for detection of harmful algae. Journal of Shellfish Research, 19: 637.
Bates, S.S., C. Scholin, M. Ferguson, and C. Leger. 1999. Application of ribosomal RNA targeted probes to detect Pseudo-nitzschia multiseries and P. pungens in Atlantic Canadian waters. Canadian Technical reports on fisheries and aquatic sciences, 2261: 63–67.
Parsons, M.L., C. Scholin, G.J. Doucette, G.A. Fryxell, Q. Dortch, and T.M. Soniat. 1999. Pseudo-nitzschia species (Bacillariophyceae) in Louisiana coastal waters: Molecular probe field trials, genetic variability and domoic acid analyses. Journal of Phycology, 35: 1368–1378. http://dx.doi.org/10.1046/j.1529-8817.1999.3561368.x
Scholin, C., R. Marin III, P.E. Miller, G.J. Doucette, C.L. Powell, J. Howard, P. Haydock, and J. Ray. 1999. Application of DNA probes and a receptor binding assay for detection of Pseudo-nitzschia (Bacillariophyceae) species and domoic acid activity in cultured and natural samples. Journal of Phycology, 35: 1356–1367.
Scholin, C.A., R. Marin III, P.E. Miller, G.J. Doucette, C.L. Powell, P. Haydock, J. Howard, and J. Ray. 1999. DNA probes and a receptor-binding assay for detection of Pseudo-nitzschia (Bacillariophyceae) species and domoic acid activity in cultured and natural samples. Journal of Phycology, 35: 1356–1367. http://dx.doi.org/10.1046/j.1529-8817.1999.3561356.x
Miller, P.E., and C.A. Scholin. 1998. Identification and enumeration of cultured and wild Pseudo-Nitzschia (Bacillariophyceae) using species-specific LSU rRNA-targeted fluorescent probes and filter-based whole cell hybridization. Journal of Phycology, 34: 371–382. http://dx.doi.org/10.1046/j.1529-8817.1998.340371.x
Rhodes, L.L., C. Scholin, I. Garthwaite, A. Haywood, and A. Thomas. 1998. Domoic acid-producing Pseudo-nitzschia species educed by whole cell DNA probebased and immunochemical assays. Harmful algae, 274–277.
Scholin, C., G. Massion, E. Mellinger, M. Brown, D.K. Wright, and D. Cline. 1998. The development and application of molecular probes and novel instrumentation for detection of harmful algae. Ocean community conference '98, MTS, 1: 367–370.
Scholin, C.A. 1998. Development of nucleic acid probe-based diagnostics for identifying and enumerating harmful algal bloom species. The Physiological Ecology of Harmful Algal Blooms.
Scholin, C.A. 1998. Morphological, genetic, and biogeographic relationships of the toxic dinoflagellates Alexandrium tamarense, A. catenella, and A. fundyense.
Scholin, C., P. Miller, K. Buck, F. Chavez, P. Harris, P. Haydock, J. Howard, and G. Cangelosi. 1997. Detection and quantification of Pseudo-nitzschia australis in cultured and natural populations using LSU rRNA-targeted probes. Limnology and Oceanography, 42: 1265–1272.
Cangelosi, G.A., A.M. Hamlin, R. Marin III, and C.A. Scholin. 1997. Detection of stable pre-rRNA in toxigenic Pseudo-nitzschia species. Applied and Environmental Microbiology, 63: 4859–4865.
Scholin, C.A., K.R. Buck, T. Britschgi, G. Cangelosi, and F.P. Chavez. 1996. Identification of Pseudo-nitzschia australis (Bacillariophyceae) using rRNA-targeted probes in whole cell and sandwich hybridization formats. Phycologia, 35: 190–197.
Scholin, C.A., P. Miller, K.R. Buck, F.P. Chavez, G. Cangelosi, P. Haydock, J. Howard, and P. Harris. 1996. DNA probe-based detection of harmful algal species using Pseudo-nitzschia species as models. Harmful and toxic algal blooms: 439–442.
Miller, P.E., and C.A. Scholin. 1996. Identification of cultured Pseudo-nitzschia (Bacillariophyceae) using species-specific LSU rRNA-targeted fluorescent probes. Journal of Phycology, 32: 646–655.
Scholin, C.A., and D.M. Anderson. 1996. Identification of Alexandrium species and strains using RFLP analysis of PCR-amplified LSU rDNA. Harmful and toxic algal blooms: 451–454.
Scholin, C.A., and D.M. Anderson. 1996. LSU rDNA-based RFLP assays for discriminating species and strains of Alexandrium (Dinophyceae). Journal of Phycology, 32: 1022–1035.
Vrieling, E.G., R.P.T. Koeman, C.A. Scholin, P. Scheerman, L. Peperzak, M. Veenhuis, and W.W.C. Gieskes. 1996. Identification of a domoic acid-producing Pseudo-nitzschia species (Bacillariophyceae) in the Dutch Wadden Sea with electron microscopy and molecular probes. European Journal of Phycology, 31: 333–340.
Scholin, C.A., G.M. Hallegraeff, and D.M. Anderson. 1995. Molecular evolution of the Alexandrium tamarense 'species complex' (Dinophyceae): dispersal in the North American and west Pacific regions. Phycologia, 34: 472–485.
Scholin, C.A., and D.M. Anderson. 1994. Identification of group- and strain-specific genetic markers for globally distributed Alexandrium (Dinophyceae). I. RFLP analysis of SSU rRNA genes. Journal of Phycology, 30: 744–754.
Scholin, C.A., M.C. Villac, K.R. Buck, J.M. Krupp, D.A. Powers, G.A. Fryxell, and F.P. Chavez. 1994. Ribosomal DNA sequences discriminate among toxic and non-toxic Pseudonitzschia species. Natural Toxins, 2: 152–165.
Judge, B.S., C.A. Scholin, and D.M. Anderson. 1993. RFLP analysis of a fragment of the large-subunit ribosomal RNA gene of globally distributed populations of the toxic dinoflagellate Alexandrium. Biological Bulletin, 185: 329–330. http://dx.doi.org/10.1086/BBLv185n2p329
Scholin, C.A., D.M. Anderson, and M.L. Sogin. 1993. Two distinct small-subunit ribosomal RNA genes in the North American toxic dinoflagellate Alexandrium fundyense (Dinophyceae). Journal of Phycology, 29: 209–216.