Leadership & Staff James Barry Senior Scientist & Benthic Ecologist [javascript protected email address] Curriculum Vitae My research group studies the biology and ecology of marine benthic communities, with a major goal of understanding interactions among environmental factors and biological adaptations that influence the survival, growth, and reproduction of organisms, ultimately determining their distribution and abundance. Our recent work emphasizes the influence of climate change, including global warming and rising atmospheric carbon dioxide levels, on ocean animals and ecosystems. Environmental conditions throughout the world ocean are changing in response to fossil fuel emissions and greenhouse warming in the atmosphere. Climate change and high carbon dioxide levels in the atmosphere are, in turn, causing a domino-like series of changes in ocean conditions, including ocean warming, decreased oxygen content of deep ocean waters due to reduced mixing of oxygenated surface waters to depth, and ocean acidification. Our lab examines the physiological responses of organisms to changing ocean conditions using experiments performed in the laboratory and in deep-sea environments using remotely operated vehicles (ROVs). Invited Presentations 2014Ocean acidification, climate change, and the new ocean: what does it mean for organisms, ecosystems, and society? NOAA Ocean Acidification Teacher Workshop, San Francisco (download)Ocean acidification research in its teens: what next to help shape our future? Global Change Gordon Conference, June, New Hampshire2013Ocean acidification and deep-sea research, California Academy of Sciences, San Francisco, Jan., 2013Oceans, Society, and Sustainability, SpectorDance, San Jose State University, San Jose, March, 2013Effects of climate change and ocean acidification on deep-sea organisms and ecosystems, CSUMB, Marina, CA, March, 2013Ecosystem and societal consequences of ocean versus atmospheric carbon storage. CSUMB, Marina, CA, April, 2013.Ocean acidification, climate change, and the new ocean: what does it mean for organisms, ecosystems, and society? Monterey Peninsula College, Monterey, CA, April, 2013Future climate change and ocean acidification affect deep-sea organisms and ecosystems. Monterey Bay Aquarium, teachers workshop, Monterey, June, 2013Shallow water FOCE installation at Hopkins Marine Station, Monterey Bay, CA. FOCE Meeting, VilleFranche, France, November, 2013Effect of ocean acidification on the feeding behavior of a bathyal echinoid, Strongylocentrotus fragilis: a dpFOCE experiment. FOCE meeting, Villefranche, France, November, 2013Effects of climate change and ocean acidification on deep-sea organisms and ecosystems, Laboratoire d’Océanographie, Villefranche, France, November, 2013.2012The effects of ocean acidification on marine benthic organisms and processes. ASLO, Salt Lake City, February 2012Effects of oxygen and pH on the performance of the urchin Strongylocentrotus fragilis across a depth gradient spanning the oxygen minimum zone, ASLO, Salt Lake City, February, 2012Ross Sea Benthic Ecosystems. Ross Sea Conservation Workshop, La Jolla, March, 2012Ocean acidification: challenges for marine organisms and society, Keynote address, XiangShang Meeting, Beijing, China, April, 2012Effects of oxygen and pH on the performance of the deep sea fragile urchin. U.K. Ocean Acidification Meeting, Exeter, April, 2012Quest TV episode on deep-sea corals. May, 2012Is climate change and ocean acidification increasing the cost of living in ocean ecosystems? UC. Santa Cruz, Whole Earth Seminar Series, May, 2012Life in the new ocean – effects of climate change and ocean acidification on marine ecosystems. Monterey Bay Aquarium, August, 2012Are deep-sea ecosystems isolated from the effects of climate change and ocean acidification?, Chesapeake Biology Laboratory, October, 2012Climate change and ocean acidification in the deep sea. Geo-Mar, Kiel, Germany, November, 2012.The U.S. National Ocean Acidification Program, BIOACID 2 Meeting, Kiel, Germany, 20122011Ocean acidification: How does changing ocean chemistry affect ocean ecosystems? Stanford University, January, 2011 (download)Ocean acidification – the other CO2 problem, Morro Bay Museum of Natural History, Morro Bay, January, 2011 (download)How ocean change affects ecosystem services: options for ocean health and societal adaptation. AAAS Meeting, Washington, D.C., February 2011 (download)Ocean warming, acidification, and hypoxia – the dominoes of climate change. Naval Postgraduate School, Monterey, March 2011 (download)As dominoes fall… The consequences of rising atmospheric CO2 for ocean conditions, ecosystems, and society. Lockheed Martin ATC Colloquium, Palo Alto, April, 2011 (download)The effects of ocean acidification on organisms: an ecophysiological perspective, U.C. Santa Cruz, May, 2011 (download)How does changing ocean chemistry affect ocean ecosystems. 2nd International Marine Conservation Congress, Victoria, BC, May 2011 (download)Ocean acidification, organisms, ecosystems, and society: an ecophysiological perspective, Stazione Zoologica di Napoli, June, 2011The oceans in transition – is ocean health sustainable? Monterey Bay Aquarium, teachers workshop, July, 2011 (download)Ocean acidification and California Coastal Ecosystems. NOAA Ocean Acidification Education Workshop, Marin Headlands, August, 2011 (download)Climate change and the oceans: Effects on coastal upwelling systems, Climate – Policy Course, Hopkins Marine Station, August, 2011 (download)Ocean Acidification 101: What is ocean acidification and how can it affect organisms, ecosystems, and society? California State Legislature Briefing, Sacramento, CA, August, 2011 (download)Physiological Responses of Benthic Invertebrates to Ocean Acidification and Hypoxia, American Fisheries Society, Seattle, September, 2011The United States Ocean Acidification program, BIOACID, German Ocean Acidification Research Program, Bremen, Germany, September, 2011Dead Seas: The Impact of Carbon Pollution on Ocean Chemistry and Policy Responses, Environmental Law Conference at Yosemite, Fish Camp, CA October, 2011 (download)Climate, oceans, humans, and sustainability, “Out of the fog talks’, Monterey, November, 2011Oceans, Climate Change, and Society, Spector Dance, November, 20112010Climate Change and the Oceans, International School of Monterey, Monterey, CA, Jan.Effects of Ocean Acidification on Brachiopods, Ocean Sciences Meeting, Portland, OR, Feb.Ocean Acidification and Ocean Ecosystems: COMPASS CA State Legislator visit, MBARI, Feb (download)MBARI Benthic Habitat Characterization, NOAA Benthic Habitat Characterization Workshop, Sidney, BC, MarchAtmospheric carbon dioxide targets for ocean acidification studies, Best Practices training workshop, Kiel, Germany, March, 2010In situ perturbation experiments in ocean acidification, Best practices training workshop, Kiel, Germany, March, 2010Ocean Acidification & the NRC OA Report, US Senate Committee Testimony, Washington, D.C., AprilClimate Change and Ocean Acidification, MBA Teachers workshop, Monterey, CA, AprilOcean Acidification and Climate Change effects on Ocean Ecosystems, Stanford, CA, MayClimate Change and Ocean Acidification: A Changing Ocean. Monterey Bay Aquarium Workshop, Monterey, CA, June (download)Ocean Acidification and Society, MBARI, JuneBiology in a high CO2 ocean, SCWRP Ocean Acidification Shellfish workshop, keynote address, Long Beach, CA, JulyAspen Institute Environmental Forum, “Ocean Acidification Panel”, Aspen, CO, July 2010Aspen Institute Environmental Forum, “Marine Spatial Planning Panel”, Aspen, CO, July 2010Climate Change and Ocean Acidification: A Changing Ocean. Monterey Bay Aquarium Workshop, Monterey, CA, JulyComparing the acid-base response of shallow-water and deep-sea decapod crabs to ocean acidification, American Physiological Society, August, Denver, COChanging Oceans: Climate Change and Ocean Acidification, Chevron Corporation, San Ramon, CA, AugustClimate change / ocean acidification panel presentation, Blue Ocean Film Festival, Monterey, AugustOverview of species responses to ocean acidification: any emerging patterns? NOAA Fisheries Ocean Acidification Workshop, Seattle, WA, AugustOcean Acidification and Climate Change panel discussion, AAAS Meeting, San Francisco, SeptemberClimate change and ocean acidification effects on society, Office of Management and Budget briefing, Washington, D.C., OctoberCongressional briefing on ocean acidification, OctoberGlobal Warming, Ocean Acidification, and Society, seminar, Cal. State. Univ. San Luis Obispo, Nov.2009The what, how, where, where, and why of ocean acidification: Understanding the effects of changing ocean chemistry from individuals to ecosystems, Monterey Bay Aquarium, Monterey, CA, NovemberThe National Research Council Ocean Acidification Report, BIOACID Investigator Meeting, Kiel, Germany, October, 2009Ocean Acidification – good, bad, or ugly for marine ecosystems? Moss Landing Marine Laboratories, September 2009Ross Sea Ecosystems: CCLAMR Ross Sea Workshop, La Jolla, August, 2009Climate Change: distraction or destruction for marine ecosystems: Ocean Studies Board, June, 2009Ecosystem effects of high ocean carbon levels: potential impacts of subseabed carbon storage, Bergen, Norway, Keynote address, May, 2009Amplified ocean acidification in the deep sea, Lawrence Livermore Laboratories, February, 2009From extreme CO2 venting to ocean acidification – experimental approaches to assess the fate of deep sea ecosystems, Goldschmidt Conference, Keynote address, June, 2009Antarctic benthic community patterns and processes, IMCC Ross Sea Conference, Washington, D.C., May 20092008Effects of ocean acidification on marine ecosystems (California State University, Stanislaus)Changing the world, one breath at a time: Humans, Climate Change, and the Oceans (Ricketts Memorial Lecture, MBNMS Sanctuary Symposium) (download)Climate change and the oceans (Monterey Institute of International Studies)Effects of the high CO2 ocean on deep-sea ecosystems (AAAS Symposium, Boston)Effects of global climate change on the oceans (Headwaters to Oceans Conference, Long Beach)Climate Change and the Oceans, (Climate Clock Colloquium, San Jose)MBARI Ocean Acidification Studies (Friday Harbor Labs, Washington)Ocean acidification and deep sea ecosystems (MIIS)Ocean acidification Studies: Issues, approaches, methods (Western Soc. Nat. Workshop)In situ perturbation experiments on ocean acidification (Best practices in OA research, Kiel, Germany)Climate change and the oceans, MBARI seminarOcean acidification and marine ecosystems, Deep-Sea Coral Symposium, Wellington, NZ2007How will climate warming and the carbon dioxide invasion from the atmosphere affect future ocean ecosystems? (Moss Landing Marine Laboratories)Barry, JP, Kochevar, RK, Whaling, PJ. Growth, production, and mortality of the vesicomyid bivalve Calyptogena kilmeri. Pacific Science Congress, Okinawa, JapanThe hard life in Monterey Canyon: effects of sediment gravity flows on benthic biological patterns and material transport across the continental margin (Oregon State University)Population dynamics of chemosynthetic clams in cold seeps off Central California (Moss Landing Marine Laboratories)Conducting Experiments in the Deep-Sea to understand the Low pH Ocean (AAAS Symposium, SF)Deep-sea Carbon Sequestration and Ocean Acidification (Carbon Management Symposium, Utretch University, The Netherlands)Ocean Carbon Sequestration (U.S. Congressional Briefing – COMPASS)MBARI Ocean Acidification Studies (Kristineberg Marine Research Station, Sweden)Ocean Acidification effects on Deep-Sea ecosystems (MBARI CO2 symposium)2006Biological Impacts of Deep-Sea Carbon Sequestration (International Seminar on Carbon Sequestration and Climate Change, Rio de Janeiro, Brazil)Can ocean carbon sequestration have significant societal value without the collapse of deep-sea ecosystems? (Stanford University)The Effects of Climate Warming and Ocean Acidification on Ocean Ecosystems (California Coastal Commission)Ocean exploration by MBARI (MBA)2005Climate change, societal values, and carbon sequestration: the biology of ocean versus atmospheric carbon dioxide storage (U.C. Davis, Bodega Marine Laboratory)The biology of the future high-CO2 ocean (Hopkins Marine Station)Climate Change and carbon sequestration: the biology of ocean versus atmospheric carbon storage (Louisiana State University)2004Biological Responses of Deep-sea organisms to direct CO2 injection. (SCOR/IOC Symposium on “The Ocean in a High CO2 World”, Paris, France)Benthic Ecology of McMurdo Sound and the SW Ross Sea, Antarctica. (NSF-sponsored McMurdo Sound LTER workshop, San Jose, CA)2003The effects of direct ocean CO2 injection on deep-sea meiofauna (RITE International Conference on the Biology of Deep-Sea CO2 sequestration, Kyoto, Japan)Ecological impacts of ocean carbon sequestration (Hopkins Marine St.)Carbon sequestration biology. (2nd Ann. Conf. on Carbon Sequestration, Washington, D.C.)Biology of Monterey Methane Seeps (JAMSTEC)Ecological impacts of ocean carbon sequestration (JAMSTEC)The effects of direct ocean CO2 injection on Deep-sea meiofauna (RITE International Workshop)Use of Vesicomyid clams as proxies for ageing submarine landslide events (AGU Fall Meeting)2002Ecological impacts of direct ocean CO2 sequestration (AGU, spring, SIO, MLML, Romberg Center)Cold seep biology and ecology (Hopkins Mar. St., Romberg Center, MLML, USF)Antarctic pelagic-benthic coupling (CSUS)<2001Cold seep biology and ecology (Hopkins Marine Station, 2001)Biological Studies of Ocean Carbon Sequestration, (AGU fall meeting, DOE Center for Carbon Sequestration Research Workshop, Oakland, CA, MBARI / DOE Ocean Injection Experts Workshop, 2001)Pelagic-benthic coupling on the Antarctic Continental Shelf (MLML, AGU, CSUS, 2001)Biological impacts of ocean carbon sequestration, (DOE Ocean Carbon Sequestration, Baltimore, 2000)Pelagic Benthic Coupling in the Ross Sea, Antarctica, (Cal. State Univ. Stanislaus, 2000)Biology and Ecology of Cold Seeps; (Friends of Moss Landing Marine Laboratories, 1999)A tale of two clams: Differing chemosynthetic life styles at cold seep communities in Monterey Bay. (UCSB, SIO, Symbiosis conference, 1997)Ecology of Chemosynthetic Communities in Monterey Bay (Hopkins Marine Station, MLML, 1996)Coupling between Fluid Chemistry and Community Structure at Cold Seeps in Monterey Bay (AAAS, San Jose State University, 1996)Methods of Underwater Positioning and Size Estimation (Groundfish Meeting, Newport, Oregon, 1996)Climate-Related Changes in Intertidal Invertebrate Communities (Nat. Mus. of Natural History, 1995)Geology and Ecology of Cold Seeps (California State University, Stanislaus, MLML, 1995)Coupling between Fluid Chemistry and Community Structure at Cold Seeps (AAAS, 1994)Sampling Benthic Populations Using ROVs: How Can Accuracy and Statistical Power Be Maximized? (Groundfish Meeting, Seattle, Washington, 1994)Biology and Ecology of Cold Seeps in Monterey Bay (JAMSTEC, UCSC, 1994)Science at MBARI, Scripps Inst. Oc., Field Studies Course, G. Kooyman, 1994Alternate Stable States in Natural Communities: Why are They Rare? (Hopkins Marine Station, 1993)
Girard, F., S.Y. Litvin, A. Sherman, P. McGill, C. Lovera, A. DeVogelaere, E. Burton, and J.P. Barry. 2023. Epibenthic faunal community dynamics and seasonal species turnover in a deep-sea coral ecosystem. Deep Sea Research Part I: Oceanographic Research Papers, 196(104048): 1–10. https://doi.org/10.1016/j.dsr.2023.104048
Barry, J.P., S.Y. Litvin, A. DeVogelaere, D.W. Caress, C.F. Lovera, A.S. Kahn, E.J. Burton, C. King, J.B. Paduan, C.G. Wheat, F. Girard, S. Sudek, A.M. Hartwell, A.D. Sherman, P.R. McGill, A. Schnittger, J.R. Voight, and E.J. Martin. 2023. Abyssal hydrothermal springs—Cryptic incubators for brooding octopus. Science Advances, 9(34): 1–13. science.org/doi/10.1126/sciadv.adg3247
McDermott, S., A. DeVogelaere, J. Barry, and A.S. Kahn. 2023. Effects of a Lost Shipping Contain in the Deep Sea. National Marine Sanctuaries Conservation Series: ONMS-023-05. https://doi.org/10.25923/57a1-q985
LaScala-Grunewald, D., N.H.N. Low, J.P. Barry, J.A. Brown, C. King, F.P. Chavez, and H.A. Ruhl. 2022. Building on a human-centred, iterative, and agile co-design strategy to facilitate the availability of deep ocean data. ICES Journal of Marine Science, 2022 (fsac145): 1–5. https://doi.org/10.1093/icesjms/fsac145
Girard, F., S.Y. Litvin, A. Sherman, P. McGill, A. Gannon, C. Lovera, A. DeVogelaere, E. Burton, D. Graves, A. Schnittger, and J. Barry. 2022. Phenology in the deep sea: Seasonal and tidal feeding rhythms in a keystone octocoral. Proceedings of the Royal Society B: Biological Sciences, 289(1985): 1–10. https://doi.org/10.1098/rspb.2022.1033
Montseny, M., C. Linares, M. Carreiro-Silva, L.A. Henry, D. Billett, E.E. Cordes, C.J. Smith, N. Papadopoulou, M. Bilan, F. Girard, H.L. Burdett, A. Larsson, S. Strömberg, N. Viladrich, J.P. Barry, P. Baena, A. Godinho, J. Grinyó, A. Santín, T. Morato, A.K. Sweetman, J.M. Gili, and A. Gori. 2021. Active ecological restoration of cold-water corals: techniques, challenges, costs, and future directions. Frontiers in Marine Science, 8: 1–21. https://doi.org/10.3389/fmars.2021.621151
Gallo, N.D., M. Beckwith, C.L. Wei, L.A. Levin, L. Kuhnz, and J.P. Barry. 2020. Dissolved oxygen and temperature best predict deep-sea fish community structure in the Gulf of California with climate change implications. Marine Ecology Progress Series, 637: 159–180. https://doi.org/10.3354/meps13240
López-Garrido, P.H., J.P. Barry, J.I. González-Gordillo, and E. Escobar-Briones. 2020. ROV’s video recordings as a tool to estimate variation in megabenthic epifauna diversity and community composition in the Guaymas Basin. Frontiers in Marine Science, 7: 1–16. https://doi.org/10.3389/fmars.2020.00154
Fagundes, M., S.Y. Litvin, F. Micheli, G. De Leo, C.A. Boch, J.P Barry., S. Omidvar, and C.B. Woodson. 2020. Downscaling global ocean climate models improves estimates of exposure regimes in coastal environments. Scientific Reports, 10: 1–11. https://doi.org/10.1038/s41598-020-71169-6
Aalto, E.A., J.P. Barry, C.A. Boch, S.Y. Litvin, F. Micheli, C.B. Woodson, and G.A. De Leo. 2020. Abalone populations are most sensitive to environmental stress effects on adult individuals. Marine Ecology Progress Series, 643: 75–85. https://doi.org/10.3354/meps13320
Boch, C.A., A. DeVogelaere, E.J. Burton, C. King, C. Lovera, K. Buck, J. Lord, L. Kuhnz, M. Kaiser, C. Reid-Rose, and J.P. Barry. 2020. Guide to translocating coral fragments for deep-sea restoration. National Marine Sanctuary Conservation Science Series: ONMS-20-10. https://repository.library.noaa.gov/view/noaa/25571
Maier, K.L., K.J. Rosenberger, C.K. Paull, R. Gwiazda, J. Gales, T. Lorenson, J.P. Barry, P.J. Talling, M. McGann, J. Xu, E. Lundsten, K. Anderson, S.Y. Litvin, D.R. Parsons, M.A. Clare, S.M. Simmons, E.J. Sumner, and M.J.B. Cartigny. 2019. Sediment and organic carbon transport and deposition driven by internal tides along Monterey Canyon, offshore California. Deep Sea Research Part I: Oceanographic Research Papers, 153(103108). https://doi.org/10.1016/j.dsr.2019.103108
Stark, J. S., E.T. Peltzer, D.I. Kline, A.M. Queiros, E.T. Cox, K. Headley, J. Barry, F. Gazeau, J.W. Runcie, S. Widdicombe, M. Milnes, N.P. Roden, J. Black, S. Whiteside, G. Johnstone, J. Ingels, E. Shaw, L. Bodrossy, J.D. Gaitan-Espitia, W. Kirkwood, and J.P. Gattuso. 2019. Free Ocean CO2 Enrichment (FOCE) experiments: Scientific and technical recommendations for future in situ ocean acidification projects. Progress in Oceanography, 172: 89–107. https://doi.org/10.1016/j.pocean.2019.01.006
Litvin, S.Y., J. Barry, C. Lovera, C.A. Boch, E.J. Burton, A.P. DeVogelaere, D. Graves, T.P. Guilderson, A.S. Kahn, C. Kecy, C. King, L.A. Kuhnz, P. McGill, and A.D. Sherman. 2019. The Deep-Sea Coral Observatory (DiSCO) Project. 7th International Symposium on Deep-Sea Corals, Cartagena, July 29 to August 2, 2019.
Omand, M., J. Sugar, K. Buesseler, C. Durkin, M. Estapa, I. Cetinic, E. D'Asaro, C. Lee, H.T. Rossby, A. Wang, A. Adams, K. Katija, and J.P. Barry. (2019). Upcoming EXPORTS technology: Trap cameras, Snocam, and Minions. NASA EXPORTS Science Meeting, Williamsburg, May 6–10, 2019. EXport Processes in the Ocean from Remote Sensing.
Kahn, A. S., J.P. Lord, K. Katija, and J.P. Barry. 2019. Respiration and water processing by glass sponges in Sur Ridge, a dense, deep-water coral and sponge habitat. Society of Integrative and Comparative Biology Annual Meeting, Tampa, January 3–7, 2019.
Lord, J.P., E.M. Harper, and J.P. Barry. 2019. Ocean acidification may alter predator-prey relationships and weaken nonlethal interactions between gastropods and crabs. Marine Ecology Progress Series, 616: 83–94. https://doi.org/10.3354/meps12921
Maier, K. L., J.A. Gales, C.K. Paull, K.J. Rosenberger, P.J. Talling, S.M. Simmons, R. Gwiazda, M. McGann, M.J.B. Cartigny, E. Lundsten, K. Anderson, M.A. Clare, J. Xu, D. Parsons, J.P. Barry, M. Wolfson-Schwehr, N.M. Nieminski, and E.J. Sumner. 2019. Linking Direct Measurements of Turbidity Currents to Submarine Canyon-Floor Deposits. Frontiers in Earth Science, 7: 1–18. https://doi.org/10.3389/feart.2019.00144
Boch, C.A., A. DeVogelaere, E. Burton, C.E. King, J.P. Lord, C. Lovera, S.Y. Litvin, L. Kuhnz, and J.P. Barry. 2019. Coral translocation as a method to restore impacted deep-sea coral communities. Frontiers in Marine Science, 6: 1–10. https://doi.org/10.3389/fmars.2019.00540
Gallo, N.D., L.A. Levin, M. Beckwith, and J.P. Barry. 2018. Home sweet suboxic home: Remarkable hypoxia tolerance in two demersal fish species in the Gulf of California. Ecology, 100(3): e02539. https://doi.org/10.1002/ecy.2539
McClain, C. R., C. Nunnally, A.S.A. Chapman, and J.P. Barry. 2018. Energetic increases lead to niche packing in deep-sea wood falls. Biology Letters, 14(9): 1–5. https://doi.org/10.1098/rsbl.2018.0294
Paull, C.K., P.J. Talling, K.L. Maier, D. Parsons, J. Xu, D.W. Caress, R. Gwiazda, E.M. Lundsten, K. Anderson, J.P. Barry, M. Chaffey, T. O'Reilly, K.J. Rosenberger, J.A. Gales, B. Kieft, M. McGann, S.M. Simmons, M. McCann, E.J. Sumner, M.A. Clare, and J. Cartigny. 2018. Powerful turbidity currents driven by dense basal layers. Nature Communications, 9: 1–9. https://doi.org/10.1038/s41467-018-06254-6
Thistle, David, L. Sedlacek, K.R. Carman, and J.P. Barry. 2017. Influence of habitat heterogeneity on the community structure of deep-sea harpacticoid communities from a canyon and an escarpment site on the continental rise off California. Deep Sea Research Part I: Oceanographic Research Papers, 123: 56–61. http://dx.doi.org/10.1016/j.dsr.2017.03.005
Webb, Thomas J., J.P. Barry, and C.R. McClain. 2017. Abundance-occupancy relationships in deep sea wood fall communities. Ecography, 40(11): 1339–1347. http://dx.doi.org/10.1111/ecog.02618
Barry, J.P., D. Graves, C. Kecy, C. Lovera, C. Okuda, C.A. Boch, and J.P. Lord. 2017. Chasing the future: How will ocean change affect marine life? Oceanography, 30: 60–71. https://doi.org/10.5670/oceanog.2017.424
Burton, E.J., L.A. Kuhnz, A.P. DeVogelaere, and J.P. Barry. 2017. Sur Ridge Field Guide: Monterey Bay National Marine Sanctuary. Marine Sanctuaries Conservation Series ONMS-17-10. U.S. Department of Commerce. National Oceanic and Atmospheric Administration, Office of National Marine Sanctuaries, Silver Spring, MD: 122.
Hamilton, S.L., C.A. Logan, H.W. Fennie, S.M. Sogard, J.P. Barry, A.D. Makukhov, L.R. Tobosa, K. Boyer, C.F. Lovera, and G. Bernardi. 2017. Species-specific responses of juvenile rockfish to elevated pCO2: From behavior to genomics. PLoS One, 12: e0169670. http://dx.doi.org/10.1371/journal.pone.0169670
Lord, J.P., and J.P. Barry. 2017. Juvenile mussel and abalone predation by the lined shore crab Pachygrapsus crassipes. Journal of Shellfish Research, 36: 209–213. http://dx.doi.org/10.2983/035.036.0122
Lord, J.P., J.P. Barry, and D. Graves. 2017. Impact of climate change on direct and indirect species interactions. Marine Ecology Progress Series, 571: 1–11. http://dx.doi.org/10.3354/meps12148
McClain, C.R., J.P. Barry, and T.J. Webb. 2017. Increased Energy Differentially Increases Richness and Abundance of Optimal Body Sizes in Deep-Sea Wood-Falls. Ecology, 99(1): 184–195. https://www.jstor.org/stable/26624024
Judge, J., and J.P. Barry. 2016. Macroinvertebrate community assembly on deep-sea wood falls in Monterey Bay is strongly influenced by wood type. Ecology, 97: 3031–3043. http://dx.doi.org/10.1002/ecy.1546
McClain, C.R., J.P. Barry, D. Eernisse, T. Horton, J. Judge, K. Kakui, C. Mah, and A. Waren 2016. Multiple processes generate productivity–diversity relationships in experimental wood-fall communities. Ecology, 97: 885–898. http://dx.doi.org/10.1890/15-1669.1
Martin, E.J., D.W. Caress, H. Thomas, B. Hobson, R. Henthorn, M. Risi, C.K. Paull, J.P. Barry, and G. Troni. 2016. Enabling new techniques in environmental assessment through multi-sensor hydrography. Marine Technology Society / Institute of Electrical and Electronics Engineers Oceans Conference, 2016: 1–7. http://dx.doi.org/10.1109/OCEANS.2016.7761487
Kim, T.W., and J.P. Barry. 2016. Boldness in a deep sea hermit crab to simulated tactile predator attacks is unaffected by ocean acidification. Ocean Science Journal, 51: 381–386. http://dx.doi.org/10.1007/s12601-016-0034-8
Gaylord, B., K.J. Kroeker, J.M. Sunday, K.M. Anderson, J.P. Barry, N.E. Brown, S.D. Connell, S. Dupont, K.E. Fabricius, J.M. Hall-Spencer, T. Klinger, M. Milazzo, P.L. Munday, B.D. Russell, E. Sanford, S.J. Schreiber, V. Thiyagarajan, M.L.H. Vaughan, S. Widdicombe, and C.D.G. Harley. 2016. The reality of ocean acidification: Ocean acidification through the lens of ecological theory. Washington Journal of Environmental Law & Policy, Environmental Law Symposium on Ocean Acidification, 6: 252–284. https://digitalcommons.law.uw.edu/wjelp/vol6/iss2/4/
Barry, J.P., J.R. Taylor, L.A. Kuhnz, and A.P. De Vogelaere. 2016. Symbiosis between the holothurian Scotoplanes sp. A and the lithodid crab Neolithodes diomedeae on a featureless bathyal sediment plain. Marine Ecology, 38: e12396. http://dx.doi.org/10.1111/maec.12396
Sunday, J.M., K.E. Fabricius, K.J. Kroeker, K.M. Anderson, N.E. Brown, J.P. Barry, S.D. Connell, S. Dupont, B. Gaylord, J.M. Hall-Spencer, T. Klinger, M. Milazzo, P.L. Munday, B.D. Russell, E. Sanford, V. Thiyagarajan, M.L.H. Vaughan, S. Widdicombe, and C.D.G. Harley. 2016. Ocean acidification can mediate biodiversity shifts by changing biogenic habitat. Nature Climate Change, 7: 81–85. http://dx.doi.org/10.1038/nclimate3161
Gaylord, B., K.J. Kroeker, J.M. Sunday, K.M. Anderson, J.P. Barry, N.E. Brown, S.D. Connell, S. Dupont, K.E. Fabricius, J.M. Hall-Spencer, T. Klinger, M. Milazzo, P.L. Munday, B.D. Russell, E. Sanford, S.J. Schreiber, V. Thiyagarajan, M.L.H. Vaughan, S. Widdicombe, and C.D.G. Harley. 2015. Ocean acidification through the lens of ecological theory. Ecology, 96: 3–15. http://dx.doi.org/10.1890/14-0802.1
Gehlen, M., R. Séférian, D.O.B. Jones, T. Roy, R. Roth, J. Barry, L. Bopp, S.C. Doney, J.P. Dunne, C. Heinze, F. Joos, J.C. Orr, L. Resplandy, J. Segschneider, and J. Tjiputra. 2015. Projected pH reductions by 2100 might put deep North Atlantic biodiversity at risk. Biogeosciences, 11: 6955–6967. http://dx.doi.org/10.5194/bg-11-6955-2014
Kim, T.W., J. Taylor, C. Lovera, and J.P. Barry. 2015. CO2-driven decrease in pH disrupts olfactory behaviour and increases individual variation in deep-sea hermit crabs. ICES Journal of Marine Science, 73(3): 613–619. http://dx.doi.org/10.1093/icesjms/fsv019
Kirkwood, W.J., P.M. Walz, E.T. Peltzer, J.P. Barry, R.A. Herlien, K.L. Headley, C. Kecy, G.I. Matsumoto, T. Maughan, T.C. O’Reilly, K.A. Salamy, F. Shane, and P.G. Brewer. 2015. Design, construction, and operation of an actively controlled deep-sea CO2 enrichment experiment using a cabled observatory system. Deep Sea Research Part I: Oceanographic Research Papers, 97: 1–9. http://dx.doi.org/10.1016/j.dsr.2014.11.005
Kuhnz, L.A., K. Buck, C. Lovera, P.J. Whaling, and J.P. Barry. Potential impacts of the Monterey Accelerated Research System (MARS) Cable on the seabed and benthic faunal assemblages. Moss Landing: Monterey Bay Aquarium Research Institute, 2015. https://tethys.pnnl.gov/publications/potential-impacts-monterey-accelerated-research-system-mars-cable-seabed-benthic
Barry, J.P., C. Lovera, K.R. Buck, E.T. Peltzer, J.R. Taylor, P. Walz, P.J. Whaling, and P.G. Brewer. 2014. Use of a Free Ocean CO2 Enrichment (FOCE) system to evaluate the effects of ocean acidification on the foraging behavior of deep-sea urchin. Environmental Science & Technology, 48: 9890–9897. http://dx.doi.org/10.1021/es501603r
Gattuso, J.P., W. Kirkwood, J.P. Barry, E. Cox, F. Gazeau, L. Hansson, I. Hendricks, D.I. Kline, P. Mahacek, S. Martin, P. McElhany, E.T. Peltzer, J. Reeve, D. Roberts, V. Saderne, K. Tait, S. Widdicombe, and P.G. Brewer. 2014. Free-ocean CO2 enrichment (FOCE) systems: Present status and future developments. Biogeosciences, 11: 4057–4075. http://dx.doi.org/10.5194/bg-11-4057-2014
McClain, C.R., and J. Barry. 2014. Beta-diversity on deep-sea wood falls reflects gradients in energy availability. Biology Letters, 10: 1–4. http://dx.doi.org/10.1098/rsbl.2014.0129
Taylor, J.R., A.P. DeVogelaere, E.J. Burton, O. Frey, L. Lundsten, L.A. Kuhnz, P.J. Whaling, C. Lovera, K.R. Buck, and J.P. Barry. 2014. Deep-sea faunal communities associated with a lost intermodal shipping container in the Monterey Bay National Marine Sanctuary, CA. Marine Pollution Bulletin, 83: 92–106. http://dx.doi.org/10.1016/j.marpolbul.2014.04.014
Taylor, J.R., C. Lovera, P.J. Whaling, K.R. Buck, E.F. Pane, and J.P. Barry. 2014. Physiological effects of environmental acidification in the deep-sea urchin Strongylocentrotus fragilis. Biogeosciences, 11: 1413–1423. https://doi.org/10.5194/bg-11-1413-2014
Walz, K.R., D.A. Clague, J.P. Barry, and R.C. Vrijenhoek. 2014. First records and range extensions for two Acesta clam species (Bivalvia: Limidae) in the Gulf of California, Mexico. Marine Biodiversity Records, 7: e60. http://dx.doi.org/10.1017/S1755267214000165
Secretariat of the Convention on Biological Diversity (J.P. Barry was a lead author). 2014. An Updated Synthesis of the Impacts of Ocean Acidification on Marine Biodiversity. CBD Technical Series No. 75: 1–99. https://news-oceanacidification-icc.org/2014/10/08/an-updated-synthesis-of-the-impacts-of-ocean-acidification-on-marine-biodiversity-secretariat-of-the-convention-on-biological-diversity/
Buck, K.R., J.P. Barry, and S.J. Hallam. 2013. Thioploca spp. sheaths as niches for bacterial and protistan assemblages. Marine Ecology, 35: 395–400. http://dx.doi.org/10.1111/maec.12076
Kecy, C.D., E.T. Peltzer, P.M. Walz, K. Headley, R.A. Herlien, T. Maughan, G.I. Matsumoto, T.C. O'Reilly, K.A. Salamy, F. Shane, C. Lovera, J. Scholfield, W. Kirkwood, J.P. Barry, and P.G. Brewer. 2013. Open source instrumentation nodes for the greater oceanographic community. Proceedings of Marine Technology Society/Institute for Electrical and Electronics Engineers Oceans 2013, San Diego, 23–26 September 2013.
Sedlacek, L., D. Thistle, G. Fernandez-Leborans, K.R. Carman, and J.P. Barry. 2013. First report of ciliate (Protozoa) epibionts on deep-sea harpacticoid copepods. Deep Sea Research II, 92: 165–171. http://dx.doi.org/10.1016/j.dsr2.2013.01.033
Shane, F.F., K. Headley, P. Walz, C. Kecy, G.I. Matsumoto, R.A. Herlien, E.T. Peltzer, J. Scholfield, K.A. Salamy, T. Maughan, T.C. O'Reilly, C. Lovera, W.J. Kirkwood, J. Barry, and P.G. Brewer. 2013. xFOCE: An open source, multi-disciplinary resource for in-situ ocean acidification research. Proceedings of Marine Technology Society/Institute of Electrical and Electronics Engineers Oceans 2013, San Diego, 23–27 September 2013.
Tang, Q., C.T.A. Chen, K. Yu, M. Dai, M. Zhao, C. Ke, G.T.F. Wong, F. Chai, G. Wei, L. Zhou, L. Chen, J. Song, J.P. Barry, Y. Wu, and K. Gao. 2013. The effects of ocean acidification on marine organisms and ecosystem. Chinese Science Bulletin, 58: 1307–1314.
Barry, J.P., K.R. Buck, C. Lovera, P.G. Brewer, B.A. Seibel, J.C. Drazen, M.N. Tamburri, P.J. Whaling, L. Kuhnz, and E.F. Pane. 2013. The response of abyssal organisms to low pH conditions during a series of CO2-release experiments simulating deep-sea carbon sequestration. Deep Sea Research II, 92: 249–260. http://dx.doi.org/10.1016/j.dsr2.2013.03.037
Kim, T.W., J.P. Barry, and F. Micheli. 2013. The effects of intermittent exposure to low pH and oxygen conditions on survival and growth of juvenile red abalone. Biogeosciences Discussions, 10: 3559–3576. http://dx.doi.org/10.5194/bgd-10-3559-2013
Taylor, J.R., C. Lovera, P.J. Whaling, K.R. Buck, E.F. Pane, and J.P. Barry. 2013. Physiological compensation for environmental acidification is limited in the deep-sea urchin Strongylocentrotus fragilis. Biogeosciences Discussions, 10: 8313–8341. http://dx.doi.org/10.5194/bgd-10-8313-2013
Xu, J.P., J.P. Barry, and C.K. Paull. 2012. Small-scale turbidity currents in a big submarine canyon. Geology, 41: 143–146. http://dx.doi.org/10.1130/G33727.1
Buck, K.R., N.N. Rabalais, J.M. Bernhard, and J.P. Barry. 2012. Living assemblages from the ‘dead zone’ and naturally occurring hypoxic zones. Anoxia: Evidence for Eukaryote Survival and Paleontological Strategies, COLE 21: 343–352. http://dx.doi.org/10.1007/978-94-007-1896-8_18
Doney, S.C., M. Ruckelshaus, J.E. Duffy, J.P. Barry, F. Chan, C.A. English, H.M. Galindo, J.M. Grebmeier, A.B. Hollowed, N. Knowlton, J. Polovina, N.N. Rabalais, W.J. Sydeman, and L.D. Talley. 2012. Climate change impacts on marine ecosystems. Annual Review of Marine Science, 4: 11–37. http://dx.doi.org/10.1146/annurev-marine-041911-111611
Levin, L.A., M.C. Gambi, J.P. Barry, A. Genin, and S. Thrush. 2011. The Dayton legacy: baselines, benchmarks, climate, disturbance, and proof. Marine Ecology, 32: 261–265. http://dx.doi.org/10.1111/j.1439-0485.2011.00473.x
Johnson, K.S., J.P. Barry, L.J. Coletti, S.E. Fitzwater, H.W. Jannasch, and C.F. Love. 2011. Nitrate and oxygen flux across the sediment-water interface observed by eddy correlation measurements on the open continental shelf. Limnology and Oceanography Methods, 9: 543–553. http://dx.doi.org/10.4319/lom.2011.9.543
Barry, J.P., S. Widdicombe, and J.M. Hall-Spencer. Effects of ocean acidification on marine biodiversity and ecosystem function. In Ocean Acidification, edited by J.P. Gattuso, L. Hansson, 192–209. Oxford, UK, Oxford University Press: 2011.
Kuhnz, L.A., J.P. Barry, K. Buck, C. Lovera, and P.J. Whaling. Potential impacts of the Monterey Accelerated Research System (MARS) on the seabed and benthic faunal assemblages. Moss Landing, California: Monterey Bay Aquarium Research Institute, 2011.
McClain, C.R., J.C. Nekola, L. Kuhnz, and J.P. Barry. 2011. Local-scale faunal turnover on the deep Pacific seafloor. Marine Ecology Progress Series, 422: 193–200. http://dx.doi.org/10.3354/meps08924
Paull, C.K., W. Ussler III, D.W. Caress, E. Lundsten, J. Barry, J.A. Covault, K.L. Maier, J. Xu, and S. Augenstein. 2010. Origins of large crescent-shaped bedforms within the axial channel of Monterey Canyon, offshore California. Geosphere, 6: 755–774. http://dx.doi.org/10.1130/GES00527.1
Fleeger, J.W., D.S. Johnson, K.R. Carman, P.B. Weisenhorn, A. Gabriele, D. Thistle, and J.P. Barry. 2010. The response of nematodes to deep-sea CO2 sequestration: A quantile regression approach. Deep-Sea Research Part I, 57: 696–707. http://dx.doi.org/10.1016/j.dsr.2010.03.003
Paull, C.K., B. Schlining, W. Ussler III, E. Lundsten, J.P. Barry, D. Caress, J. Johnson, and M. McGann. 2010. Submarine mass transport within Monterey Canyon: Benthic disturbance controls on the distribution of chemosynthetic biological communities. Submarine mass movements and their consequences, Advances in natural and technological hazards research, 28: 229–246.
Barry, J., et al. 2010. "Frequently asked questions about ocean acidification." U.S. Ocean Carbon and Biogeochemistry, European Project on Ocean Acidification, 19 March 2010.
Barry, J., L. Kuhnz, K. Buck, C. Lovera, and P.J. Whaling. 2010. Potential impacts of the MARS cable on the seabed and benthic faunal assemblages. Report to: Monterey Bay National Marine Sanctuary.
Barry, J.P. 2010. Marine organisms and ecosystems in a high CO2 ocean, and an overview of recommendations from the NRC committee report on development of an integrated science strategy for ocean acidification monitoring, research, and impacts assessment. Daily Digest: U.S. Senate Hearing on the Environmental and Economic impacts of Ocean Acidification, April 22, 2010: D423.
Barry, J.P., J.M. Hall-Spencer, and T. Tyrrell. In situ perturbation experiments: Natural venting sites, spatial/temporal gradients in ocean pH, manipulative in situ pCO2 perturbations. Best Practices for Ocean Acidification Research, edited by U. Riebesell, 123–136. Luxembourg: Publications Office of the European Union, 2010.
Barry, J.P., T. Tyrrell, L. Hansson, G.K. Plattner, and J.P. Gattuso. Atmospheric CO2 targets for ocean acidification perturbation experiments. Best Practices for Ocean Acidification, edited by U. Riebesell, 53–63. Luxembourg: Publications Office of the European Union, 2010.
Hofmann, G.E., J.P. Barry, P.J. Edmunds, R.D. Gates, D.A. Hutchins, T. Klinger, and M.A. Sewell. 2010. The effects of ocean acidification on calcifying organisms in marine ecosystems: An organism to ecosystem perspective. Annual Review of Ecology, Evolution and Systematics, 41: 127–147. http://dx.doi.org/10.1146/annurev.ecolsys.110308.120227
McClain, C.R., and J.P. Barry. 2010. Habitat heterogeneity, disturbance, and productivity work in concert to regulate biodiversity in deep submarine canyons. Ecology, 91: 964–976.
McClain, C.R., L. Lundsten, J.P. Barry, and A. DeVogelaere. 2010. Assemblage structure, but not diversity or density, change with depth on a northeast Pacific seamount. Marine Ecology, 31 (Suppl.1): 1–12. http://dx.doi.org/10.1111/j.1439-0485.2010.00367.x
National Research Council (J.P. Barry was a member of the committee and co-author of the report). Ocean Acidification: A national strategy to meet the challenges of a changing ocean. Washington, D.C., National Academies Press: 2010. https://doi.org/10.17226/12904
Sedlacek, L., D. Thistle, K.R. Carman, J.W. Fleeger, and J.P. Barry. 2009. Effects of carbon dioxide on deep-sea harpacticoids revisited. Deep-Sea Research Part I, 56: 1018–1025. http://dx.doi.org/10.1016/j.dsr.2009.01.004
Lundsten, L., C.R. McClain, J.P. Barry, G.M. Cailliet, D. Clague, and A. DeVogelaere. 2009. Ichthyofauna on three seamounts off southern and central California, USA. Marine Ecology Progress Series, 389: 223–232. http://dx.doi.org/10.3354/meps08181
Lundsten, L., J.P. Barry, G.M. Caillet, D.A. Clague, A. DeVogelaere, and J.B. Geller. 2009. Benthic invertebrate communities on three seamounts off southern and central California, USA. Marine Ecology Progress Series, 374: 23–32. http://dx.doi.org/10.3354/meps07745
Bernard, J.M., J.P. Barry, K.R. Buck, and V.R. Starczak. 2009. Impact of intentionally injected carbon dioxide hydrate on deep-sea benthic foraminiferal survival. Global Change Biology, 15: 2078–2088. http://dx.doi.org/10.1111/j.1365-2486.2008.01822.x
Kirkwood, W., E.T. Peltzer, J. Barry, and P. Brewer. 2009. Recent advances in FOCE technology: Building a better sea floor CO2 enrichment experiment. Proceedings of the Eleventh Pacific Science Inter-Congress of the Pacific Science Association.
McClain, C.R., L. Lundsten, M. Ream, J.P. Barry, and A. DeVogelaere. 2009. Endemicity, Biogeograhy, Composition, and Community Structure On a Northeast Pacific Seamount. PLoS ONE, 4: e4141. http://dx.doi.org/10.1371/journal.pone.0004141
Barry, J.P., C. Lovera, C. Okuda, E. Nelson, and E. Pane. 2008. A gas-controlled aquarium system for ocean acidification studies. Proceedings of the Marine Technology Society / Institute of Electrical and Electronics Engineers Kobe Techno Ocean Meeting.
Brewer, P.G., and J.P. Barry. 2008. The other CO2 problem. Scientific American: Special Edition Earth 3.0: 22–23.
Pane, E.F., M. Grosell, and J.P. Barry. 2008. Hypercapnic tolerance of deep- and shallow-living crabs. Aquatic Biology, 4: 23–32.
Barry, J.P., P.J. Whaling, and R.K. Kochevar. 2007. Growth, production, and mortality of the chemosynthetic vesicomyid bivalve, Calyptogena kilmeri, from cold seeps off central California. Marine Ecology, 28: 169–182. http://dx.doi.org/10.1111/j.1439-0485.2007.00119.x
Caldeira, K, D. Archer, J.P. Barry, R. Bellerby, P.G. Brewer, L. Cao, A.G. Dickson, S.C. Doney, H. Elderfield, V. Fabry, R.A. Freely, J.P. Gattuso, O. Hoegh-Guldberg, P.M. Haugan, J.A. Kleypas, C. Langdon, J.C. Orr, A. Ridgwell, C.L. Sabine, B.A. Seibel, C. Turley, A. Watson, and R. Zeebe. 2007. Comment on "Modern-age buildup of CO2 and its effects on seawater acidity and salinity". Geophysical Research Letters, 34: 1–3. http://dx.doi.org/10.1029/2006GL027288
Levin, L.A., J.P. Barry, H. Felbeck, C.R. Smith, and C.R. Young. 2007. Advances in vent, seep, whale-, and wood-fall biology. Marine Ecology, 28: 1–2. http://dx.doi.org/10.1111/j.1439-0485.2007.00153.x
Thistle, D., L. Sedlacek, K.R. Carman, J.W. Fleeger, and J.P. Barry. 2007. Emergence in the deep-sea: Evidence from harpacticoid copepods. Deep-Sea Research Part I, 54: 1008–1014. http://dx.doi.org/10.1016/j.dsr.2007.03.002
Barry, J.P., and J.C. Drazen. 2007. Response of deep-sea scavengers to mild hypercapnia and the odor from a dead grenadier. Marine Ecology Progress Series, 350: 193–207.
Fujikura, K., K. Amaki, J.P. Barry, Y. Fujiwara, Y. Furushima, R. Iwase, H. Yamamoto, and T. Maruyama. 2007. Direct observations of spawning behavior and synchrony in Calyptogena clams using an observatory and an estimate of fecundity. Marine Ecology Progress Series, 333: 185–193.
Grebmeier, J.M., and J.P. Barry. 2007. Benthic processes in polar polynyas. Polynyas: Windows into polar oceans, Elsevier Oceanography Series: 262–290.
Pane, E.F., and J.P. Barry. 2007. Inefficient acid-base regulation in the deep-sea decapod crab (Chionoecetes tanneri) during short-term hypercapnia. Marine Ecology Progress Series, 334: 1–9.
Thistle, D., L. Sedlacek, K.R. Carman, J.W. Fleeger, P.G. Brewer, and J.P. Barry. 2007. Exposure to carbon dioxide-rich seawater is stressful for deep-sea species: An in-situ, behavioral study. Marine Ecology Progress Series, 340: 9–16. http://dx.doi.org/10.3354/meps340009
Fleeger, J.W., K.R. Carman, P.B. Weisenhorn, H. Sofranko, T. Marshall, D. Thistle, and J. Barry. 2006. Simulated sequestration of anthropogenic carbon dioxide at a deep-sea site: Effects on nematode abundance and biovolume. Deep-Sea Research Part I, 53: 1135–1147. http://dx.doi.org/10.1016/j.dsr.2006.05.007
Kogan, I., C.K. Paull, L. Kuhnz, E.J. Burton, S. Von Thun, H.G. Greene, and J. Barry. 2006. ATOC/Pioneer Seamount cable after 8 years on the seafloor: Observations and environmental impact. Continental Shelf Research, 26: 771–787. http://dx.doi.org/10.1016/j.csr.2006.01.010
Stein, D.L., J.C. Drazen, K.L. Schlining, J. Barry, and L. Kuhnz. 2006. Snailfishes of Monterey Canyon: Video, photographic, and morphological observations. Journal of Fish Biology, 69: 970–986.
Thistle, D., L. Sedlacek, K.R. Carman, J.W. Fleeger, P.G. Brewer, and J. Barry. 2006. Simulated sequestration of anthropogenic carbon dioxide at a deep-sea site: Effects on harpacticoid-copepod species. Journal of Experimental Marine Biology and Ecology, 330: 141–158.
Drazen, J.C., L.E. Bird, and J.P. Barry. 2005. Development of a hyperbaric trap-respirometer for the capture and maintenance of live deep-sea organisms. Limnology and Oceanography: Methods, 3: 488–498.
Paull, C.K., W. Ussler III, H.G. Greene, J. Barry, and R. Keaten. 2005. Bioerosion by chemosynthetic biological communities on holocene submarine slide scars. Geo-Marine Letters, 25: 11–19. http://dx.doi.org/10.1007/s00367-004-0184-z
Paull, C.K., W. Ussler, III, J. Barry, H.G. Greene, and R. Keaten. 2005. Bioerosion by chemosynthetic biological communities on Holocene slide scars. Geo-Marine Letters, 25: 11–19. http://dx.doi.org/10.1007/s00367-004-0184-z
Barry, J.P., K.R. Buck, C. Lovera, L. Kuhnz, and P.J. Whaling. 2005. Utility of deep-sea CO2 release experiments in understanding the biology of a high CO2 ocean: Effects of hypercapnia on deep-sea meiofauna. Journal of Geophysical Research, Oceans, 110: C09S12. http://dx.doi.org/10.1029/2004JC002629
Kirkwood, W., D. Graves, M. Conway, D. Pargett, J. Scholfield, P. Walz, R.M. Dunk, E.T. Peltzer, J. Barry, and P.G. Brewer. 2005. Engineering development of the free ocean CO2 enrichment (FOCE) experiment. Proceedings of the Marine Technology Society / Institute of Electrical and Electronics Engineers Oceans Conference.
Ricketts, E.R., J.P. Kennett, T.M. Hill, and J.P. Barry. 2005. Effects of CO2 hydrate on deep-sea foraminiferal assemblages. Proceedings of the Marine Technology Society / Institute of Electrical and Electronics Engineers Oceans Conference.
Thistle, D., K.R. Carman, L. Sedlacek, P.G. Brewer, J.W. Fleeger, and J.P. Barry. 2005. Deep-ocean experimental tests of the sensitivity of sediment-dwelling animals to imposed CO2 gradients. Marine Ecology Progress Series, 289: 1–4.
Barry, J.P., K.R. Buck, C.F. Lovera, L. Kuhnz, P.J. Whaling, E.T. Peltzer, P. Walz, and P.G. Brewer. 2004. Effects of direct ocean CO2 injection on deep-sea meiofauna. Journal of Oceanography, 60: 759–766. http://dx.doi.org/10.1007/s10872-004-5768-8
Carman, K.R., D. Thistle, J. Fleeger, and J.P. Barry. 2004. The influence of introduced CO2 on deep-sea metazoan meiofaunal. Journal of Oceanography, 60: 767–772.
Goffredi, S.K., J.P. Barry, and K.R. Buck. 2004. Vesicomyid symbioses from Monterey Bay (Central California) cold seeps. Symbiosis, 36: 1–27.
Kogan, I., C.K. Paull, L. Kuhnz, E. Burton, S. von Thun, H.G. Greene, and J.P. Barry. 2003. Environmental impact of the ATOC/Pioneer Seamount Submarine Cable: 80.
Paull, C.K., W. Ussler, III, H.G. Greene, R. Keaten, P. Mitts, and J.P. Barry. 2003. Caught in the act: The December 20th, 2001 gravity flow event in Monterey Canyon. Geo-Marine Letters, 22: 227–232.
Barry, J.P., J. Grebmeier, J. Smith, and R.B. Dunbar. 2003. Bathymetric versus oceanographic control of benthic megafaunal patterns in the Ross Sea, Antarctica. Antarctic Research Series, 78: 327–354.
Barry, J.P., B.A. Seibel, J.C. Drazen, M.N. Tamburri, K.R. Buck, C. Lovera, L. Kuhnz, E.T. Peltzer, K. Osborn, P.J. Whaling, P. Walz, and P.G. Brewer. 2003. Deep-sea field experiments on the biological impacts of direct deep-sea CO2 injection. Proceedings of the Second Annual Conference on Carbon Sequestration: 1–7.
Grebmeier, J.G., G.R. DiTullio, J.P. Barry, and L.W. Cooper. 2003. Benthic carbon cycling in the Ros Sea polynya, Antarctica: Benthic community metabolism and sediment tracers. Antarctic Research Series, 78: 301–326.
Yoklavich, M., G. Cailliet, D. Oxman, J.P. Barry, and D.C. Lindquist. 2003. Ecosystem changes in a California estuary: a characterization of Elkhorn Slough. Fishes: 163–185.
Eastman, J.T., and J.P. Barry. 2002. Underwater video observation of the Antarctic toothfish, Dissostichus mawsoni (Perciformes: Nototheniidae) in the Ross Sea, Antarctica. Polar Biology, 25: 391–395.
Orange, D.L., J. Yun, N. Maher, J.P. Barry, and H.G. Greene. 2002. Tracking California seafloor seeps with bathymetry, backscatter and ROVs. Continental Shelf Research, 22: 2273–2290. http://dx.doi.org/10.1016/S0278-4343(02)00054-7
Barry, J.P., K.R. Buck, R.K. Kochevar, D.C. Nelson, Y. Fujiwara, S.K. Goffredi, and J. Hashimoto. 2002. Methane-based symbiosis in a mussel, Bathymodiolus platifrons, from cold seeps in Sagami Bay, Japan. Invertebrate Biology, 121: 47–54.
Goffredi, S.K., and J.P. Barry. 2002. Energy acquisition in vesicomyid symbioses. Cahiers Biologie Marine, 43: 345–350.
Goffredi, S.K., and J.P. Barry. 2002. Species-specific variation in sulfide physiology between closely related vesicomyid clams. Marine Ecology Progress Series, 225: 227–238. http://dx.doi.org/10.3354/meps225227
Bernhard, J.M., K.R. Buck, and J.P. Barry. 2001. Monterey Bay cold-seep biota: Assemblages, abundance, and ultrastructure of living foraminifera. Deep Sea Research Part I: Oceanographic Research Papers, 48: 2233–2249. http://dx.doi.org/10.1016/S0967-0637(01)00017-6
Johnson, K.S., C.K. Paull, J.P. Barry, and F.P. Chavez. 2001. A decadal record of underflows from a coastal river into the deep sea. Geology, 29: 1019–1022. http://dx.doi.org/10.1130/0091-7613(2001)029<1019_Adrouf>2.0.Co;2
Torres, M.E., J.P. Barry, D.A. Hubbard, and E. Suess. 2001. Reconstructing the history of fluid flow at cold seep sites from Ba/Ca ratios in vesicomyid clam shells. Limnology and Oceanography, 46: 1701–1708.
Barry, J.P., and N. Maher. 2000. Observation of the prickly shark, Echinorhinus cookei, from the oxygen minimum zone in Santa Barbara Basin, California. California Fish and Game, 86: 213–215.
Buck, K.R., J.P. Barry, and A.G.B. Simpson. 2000. Monterey Bay cold seep biota: Euglenozoa with chemoautotrophic bacterial epibionts. European Journal of Phycology, 36: 117–126.
DiTullio, G.R., J. Grebmeier, K.R. Arrigo, M.P. Lizotte, D.H. Robinson, A. Leventer, J.P. Barry, M. VanWoert, and R.B. Dunbar. 2000. Rapid and early export of Phaeocystis antarctica blooms in the Ross Sea, Antarctica. Nature, 404: 595–598. http://dx.doi.org/10.1038/35007061
Peek, A.S., B.S. Gaut, R.A. Feldman, J.P. Barry, R.E. Kochevar, R.A. Lutz, and R.C. Vrijenhoek. 2000. Neutral and nonneutral mitochondrial genetic variation in deep sea clams from the family Vesicomyidae. Journal of Molecular Evolution, 50: 141–153.
Barry, J.P., K.R. Buck, S.K. Goffredi, and J. Hashimoto. 2000. Ultrastructure studies of two chemosynthetic invertebrate-bacterial symbioses (Lamellibrachia sp. and Acharax sp.) from the Hatsushima cold seeps in Sagami Bay, Japan. JAMSTEC Journal of Deep-Sea Research, 16: 91–99.
Dunbar, R.B., K. Arrigo, J.P. Barry, D. Bromwich, J. Ditullio, J. Grebmeier, L. Langone, A. Leventer, M. Lizotte, D. Robinson, and M.V. Woert. 2000. Interannual variability of production and C export in the Ross Sea Polyny. JGOFS symposium.
Dunbar, R.B., K. Arrigo, J.P. Barry, D. Bromwich, J. Ditullio, J. Grebmeier, A. Leventer, M. Lizotte, D. Robinson, and M.V. Woert. 2000. Interannual variability of the Ross Sea Polynya ecosystem: Climatic forcing of polar primary and export productio. EOS, Transactions of the American Geophysical Union.
Ahmad, A., J.P. Barry, and D.C. Nelson. 1999. Phylogenetic affinity of a wide, vacuolate, nitrate-accumulating Beggiatoa sp. from Monterey Canyon, California, with Thioploca spp. Applied and Environmental Microbiology, 65: 270–277.
Barry, J.P., and R.E. Kochevar. 1999. Calyptogena diagonalis, a new vesicomyid bivalve from subduction zone cold seeps in the eastern north Pacific. Veliger, 42: 117–123.
Orange, D.L., H.G. Greene, D.L. Reed, J.B. Martin, C.M. McHugh, W.B.F. Ryan, N. Maher, D.S. Stakes, and J.P. Barry. 1999. Widespread fluid expulsion on a translational continental margin: Mud volcanoes, fault zones, headless canyons, and organic-rich substrate in Monterey Bay, California. Geological Society of America Bulletin, 111: 992–1009. http://dx.doi.org/10.1130/0016-7606(1999)111<0992_Wfeoat>2.3.Co;2
Pennington, J.T., M.N. Tamburri, and J.P. Barry. 1999. Development, temperature tolerance, and settlement preference of embryos and larvae of the articulate brachiopod Laqueus californianus. Biological Bulletin, 196: 245–256. http://dx.doi.org/10.2307/1542949
Sagarin, R.D., J.P. Barry, S.E. Gilman, and C.H. Baxter. 1999. Climate-related change in an intertidal community over short and long time scales. Ecological monographs, 69: 465–490. http://dx.doi.org/10.1890/0012-9615(1999)069[0465:Crciai]2.0.Co;2
Tamburri, M.N., and J.P. Barry. 1999. Corrigendum to "Adaptations for scavenging by three diverse bathyla species Eptatretus stouti, Neptunea amianta and Orchomene obtusus" [Deep-Sea Research 46 (1999) 2079-2093]. Deep Sea Research Part I: Oceanographic Research Papers, 47: 755.
Tamburri, M.N., and J.P. Barry. 1999. Adaptations for scavenging by three diverse bathyla species, Eptatretus stouti, Neptunea amianta and Orchomene obtusus. Deep-Sea Research I, 46: 2079–2093. http://dx.doi.org/10.1016/S0967-0637(99)00044-8
Barry, J.P., and R.E. Kochevar. 1998. A tale of two clams: Differing chemosynthetic life styles among vesicomyids in Monterey Bay cold seeps. Cahiers de Biologie Marine, 39: 329–331.
Buck, K.R., and J.P. Barry. 1998. Monterey Bay cold seep infauna: quantitative comparison of bacterial mat meiofauna with non-seep control sites. Cahiers de Biologie Marine, 39: 333–335.
Dawe, T.C., D.S. Stakes, P.R. McGill, J.P. Barry, and S. Etchemendy. 1998. Subsea instrument deployments: methodology and techniques using a work class Remotely Operated Vehicle (ROV). Oceans '98, 3: 1589–1593.
Barry, J.P., R.E. Kochevar, and C.H. Baxter. 1997. The influence of pore-water chemistry and physiology on the distribution of vesicomyid clams at cold seeps in Monterey Bay: Implications for patterns of chemosynthetic community organization. Limnology and Oceanography, 42: 318–328.
Barry, J.P., R.E. Kochevar, C.H. Baxter, and C. Harrold. 1997. Calyptogena packardana, a new species of vesicomyid bivalve from cold seeps in Monterey Bay, California. Veliger, 40: 341–349.
Lisin, S.E., E.E. Hannan, R.E. Kochevar, C. Harrold, and J.P. Barry. 1997. Temporal variation in gametogenic cycles of vesicomyid clams. Invertebrate Reproduction and Development, 31: 307–318. http://dx.doi.org/10.1080/07924259.1997.9672590
Greene, H.G., J.P. Barry, J. Hashimoto, Y. Fujiwara, R.E. Kochevar, and B.H. Robison. 1997. A submersible-based comparison of cold-seep regions in Sagami and Monterey Bays. JAMSTEC Journal of Deep Sea Research: 395–415.
Barry, J.P., R.E. Kochevar, J. Hashimoto, Y. Fujiwara, K. Fujikura, and H.G. Greene. 1997. Studies of the physiology of chemosynthetic fauna at cold seeps in Sagami Bay, Japan. JAMSTEC Journal of Deep-Sea Research, 13: 417–423.
Barry, J.P., H.G. Greene, D.L. Orange, C.H. Baxter, B.H. Robison, R.E. Kochevar, J.W. Nybakken, D.L. Reed, and C.M. McHugh. 1996. Biologic and geologic characteristics of cold seeps in Monterey Bay, California. Deep Sea Research Part I: Oceanographic Research Papers, 43: 1739–1762. https://doi.org/10.1016/S0967-0637(96)00075-1
McHatton, S.C., J.P. Barry, H.W. Jannasch, and D.C. Nelson. 1996. High nitrate concentrations in vacuolate, autotrophic marine Beggiatoa spp.. Applied and Environmental Microbiology, 62: 954–958.
Orange, D.L., J. Barry, N. Maher, H.G. Greene, J.B. Martin, B. McAdoo, J. Yun, and Anonymous. 1996. ROV studies of fluid expulsion along a transpressional continental margin (Monterey Bay, California) [Monograph]. 1996 ocean sciences meeting.
Orange, D.L., J. Barry, N. Maher, D. Stakes, J. Paduan, H.G. Greene, J.B. Martin, B. McAdoo, J. Yun, and Anonymous. 1996. ROV observations of fluid expulsion in Monterey Bay, California [Monograph]. American Association of Petroleum Geologists 1996 annual convention.
Barry, J.P., M.M. Yoklavich, G.M. Cailliet, D.A. Ambrose, and B.S. Antrim. 1996. Trophic ecology of the dominant fishes in Elkhorn Slough, California, 1974-1980. Estuaries, 19: 115–138.
Barry, J.P., C.H. Baxter, R.D. Sagarin, and S.E. Gilman. 1995. Climate-related long-term faunal changes in a California rocky intertidal community. Science, 267: 672–675. http://dx.doi.org/10.1126/science.267.5198.672
Stoker, C.R., D.R. Barch, B.P. Hine III, and J. Barry. 1995. Antarctic undersea exploration using a robotic submarine with a telepresence user interface. IEEE, Expert Intelligent Systems & Their Applications, 10: 14–23.
Greene, H.G., M.M. Yoklavich, J.P. Barry, D.L. Orange, D.E. Sullivan, G.M. Cailliet, and Anonymous. 1994. Geology and related benthic habitats of Monterey Canyon, Central California [Monograph]. 1994 ocean sciences meeting.
Stoker, C.R., J. Barry, D.R. Barch, and B.P. Hine III. 1994. Use of telepresence and virtual reality in undersea exploration: 1993 Antarctic telepresence experiment. Technologies in Environmental Applications: 37–44.
McFeters, G.A., J.P. Barry, and J.P. Howington. 1993. Distribution of enteric bacteria in Antarctic seawater surrounding a sewage outfall. Water Research, 27: 645–650.
Greene, H.G., D.S. Stakes, D.L. Orange, J.P. Barry, and B.H. Robison. 1993. Application of a remotely operated vehicle in geologic mapping of Monterey Bay, California, USA. Proceedings of the American Academy of Underwater Sciences: 67–81.
Barry, J.P., and M.J. Ehret. 1993. Diet, food preference, and algal availability for fishes and crabs on intertidal reef communities in southern California. Environmental Biology of Fishes, 37: 75–95.
Howington, J.P., G.A. McFeters, J.P. Barry, and J.J. Smith. 1992. Distribution of the McMurdo Station sewage plume. Marine Pollution Bulletin, 25: 9–12.
Barry, J.P., and C.H. Baxter. 1992. Survey design considerations for deep-sea benthic communities using ROVs. Marine Technology Society Journal, 26: 20–26.
Grebmeier, J.M., and J.P. Barry. 1991. The influence of oceanographic processes on pelagic-benthic coupling in polar regions: A benthic perspective. Journal of Marine Systems, 2: 495–518.
Yoklavich, M.M., G.M. Cailliet, J.P. Barry, D.A. Ambrose, and B.S. Antrim. 1991. Temporal and spatial patterns in abundance and diversity of fish assemblages in Elkhorn Slough, California. Estuaries, 14: 465–480.